Wall clock time and date at job start Fri Apr 10 2020 18:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46642 * 2 1 4 4 C 1.52999 * 109.46984 * 240.00139 * 2 1 3 5 5 C 1.53006 * 109.46623 * 174.99905 * 4 2 1 6 6 C 1.52999 * 109.46626 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.47000 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.47373 * 180.02562 * 7 6 5 9 9 C 1.36929 * 119.99988 * 179.97438 * 8 7 6 10 10 H 1.08003 * 120.00181 * 0.02562 * 9 8 7 11 11 C 1.38815 * 119.99998 * 179.97438 * 9 8 7 12 12 N 1.31614 * 119.99694 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00119 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46918 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46994 * 120.00351 * 13 11 9 16 16 H 1.48494 * 109.47272 * 240.00463 * 13 11 9 17 17 N 1.46492 * 109.46798 * 119.99799 * 2 1 3 18 18 C 1.34775 * 120.00286 * 275.00127 * 17 2 1 19 19 O 1.21279 * 119.99821 * 0.02562 * 18 17 2 20 20 C 1.50703 * 120.00184 * 180.02562 * 18 17 2 21 21 H 1.08997 * 108.56389 * 62.06210 * 20 18 17 22 22 C 1.51779 * 108.61434 * 304.26218 * 20 18 17 23 23 C 1.52941 * 110.88562 * 171.89448 * 22 20 18 24 24 N 1.47185 * 108.69302 * 86.44808 * 23 22 20 25 25 C 1.33376 * 120.43297 * 288.04389 * 24 23 22 26 26 O 1.21276 * 119.89476 * 180.25261 * 25 24 23 27 27 C 1.51427 * 120.21251 * 0.28919 * 25 24 23 28 28 C 1.51794 * 108.61543 * 180.02562 * 20 18 17 29 29 H 1.08998 * 109.46901 * 300.00234 * 1 2 3 30 30 H 1.08999 * 109.47112 * 60.00253 * 1 2 3 31 31 H 1.09001 * 109.46642 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47486 * 55.00077 * 4 2 1 33 33 H 1.09001 * 109.47362 * 294.99354 * 4 2 1 34 34 H 1.08993 * 109.46955 * 300.00075 * 5 4 2 35 35 H 1.09000 * 109.47050 * 59.99904 * 5 4 2 36 36 H 1.08993 * 109.47839 * 299.99931 * 6 5 4 37 37 H 1.09000 * 109.47160 * 60.00369 * 6 5 4 38 38 H 1.09004 * 109.47107 * 300.00294 * 7 6 5 39 39 H 1.09000 * 109.46866 * 60.00185 * 7 6 5 40 40 H 0.97003 * 119.99532 * 0.02562 * 8 7 6 41 41 H 0.97010 * 119.99657 * 179.97438 * 12 11 9 42 42 H 0.97002 * 119.99805 * 95.00465 * 17 2 1 43 43 H 1.08999 * 109.19605 * 292.24301 * 22 20 18 44 44 H 1.09000 * 109.19669 * 51.52117 * 22 20 18 45 45 H 1.09001 * 109.59028 * 326.68175 * 23 22 20 46 46 H 1.09006 * 109.72565 * 206.29235 * 23 22 20 47 47 H 0.97002 * 119.78818 * 108.02861 * 24 23 22 48 48 H 1.09008 * 109.62773 * 311.50601 * 27 25 24 49 49 H 1.08997 * 109.63298 * 190.91645 * 27 25 24 50 50 H 1.09000 * 109.22135 * 308.25774 * 28 20 18 51 51 H 1.08999 * 109.22075 * 67.64652 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3136 6 6 4.0750 -1.3349 -2.5626 7 6 5.5999 -1.2275 -2.6267 8 7 6.0883 -1.9181 -3.8229 9 6 7.4303 -1.9544 -4.0925 10 1 8.1288 -1.4743 -3.4231 11 6 7.8931 -2.6091 -5.2256 12 7 7.0419 -3.1946 -6.0410 13 14 9.7238 -2.6581 -5.5939 14 1 10.4621 -1.9301 -4.5307 15 1 10.1825 -4.0698 -5.6367 16 1 9.9821 -2.0136 -6.9065 17 7 2.0183 -0.6905 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.8581 1.1584 2.4117 20 6 2.6498 -0.7285 3.5875 21 1 3.6627 -1.0818 3.3946 22 6 1.7618 -1.9312 3.8495 23 6 2.3398 -2.8030 4.9653 24 7 1.8703 -2.2846 6.2603 25 6 2.3497 -1.1372 6.7427 26 8 1.9593 -0.7214 7.8129 27 6 3.3794 -0.3518 5.9579 28 6 2.6923 0.2631 4.7360 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -0.2617 -2.1370 33 1 1.7518 -1.7715 -1.2056 34 1 3.8532 0.4370 -1.3572 35 1 3.9995 -1.0727 -0.4259 36 1 3.7867 -2.3851 -2.5186 37 1 3.6404 -0.8758 -3.4505 38 1 5.8886 -0.1773 -2.6705 39 1 6.0341 -1.6870 -1.7387 40 1 5.4609 -2.3489 -4.4242 41 1 7.3653 -3.6519 -6.8331 42 1 2.2490 -1.6317 1.1526 43 1 0.7695 -1.5872 4.1414 44 1 1.6813 -2.5227 2.9376 45 1 3.4287 -2.7673 4.9300 46 1 2.0035 -3.8322 4.8396 47 1 1.2076 -2.7804 6.7662 48 1 4.1783 -1.0182 5.6325 49 1 3.7911 0.4399 6.5838 50 1 3.2430 1.1504 4.4238 51 1 1.6744 0.5477 5.0023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171922900.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:29 Heat of formation + Delta-G solvation = -124.409037 kcal Electronic energy + Delta-G solvation = -27594.734793 eV Core-core repulsion = 23719.634035 eV Total energy + Delta-G solvation = -3875.100758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.64587 -40.56974 -38.20245 -37.44448 -36.78982 -34.81020 -34.75138 -33.13016 -32.22891 -31.23237 -28.79991 -28.04948 -25.93911 -25.12031 -23.86822 -22.98218 -22.00118 -21.67733 -21.02267 -20.55285 -19.11247 -18.62226 -18.15779 -17.44298 -17.25736 -16.67261 -16.31681 -16.16145 -15.73986 -15.41534 -15.28916 -15.20997 -14.98689 -14.62198 -14.49127 -14.44264 -14.10924 -13.86872 -13.59055 -13.24433 -13.21654 -13.04506 -12.88747 -12.84821 -12.75801 -12.45360 -12.42730 -12.23814 -12.09759 -11.91041 -11.85579 -11.76987 -11.67064 -11.45312 -11.35997 -10.93552 -10.86225 -10.76186 -10.10908 -9.98759 -8.99908 -7.95842 -5.24655 1.47905 1.48755 1.58964 1.61345 1.70616 2.25354 2.40930 2.56139 3.37851 3.50520 3.56884 3.64573 3.73791 3.82523 4.07171 4.09261 4.16400 4.20114 4.32719 4.38447 4.41997 4.45168 4.50912 4.54455 4.63556 4.67268 4.68034 4.78532 4.81928 4.90788 4.96414 5.00538 5.02132 5.04257 5.05991 5.17593 5.20735 5.25852 5.29919 5.34638 5.48131 5.49090 5.56575 5.65493 5.90860 6.27502 6.28059 6.64761 7.24710 7.33170 7.34668 8.10540 8.33197 9.27947 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.014421 B = 0.002025 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.187667 B =13825.508511 C =14985.085231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.144 3.856 3 H 0.063 0.937 4 C -0.116 4.116 5 C -0.104 4.104 6 C -0.113 4.113 7 C 0.148 3.852 8 N -0.750 5.750 9 C -0.247 4.247 10 H 0.074 0.926 11 C -0.078 4.078 12 N -0.969 5.969 13 Si 0.975 3.025 14 H -0.266 1.266 15 H -0.290 1.290 16 H -0.293 1.293 17 N -0.710 5.710 18 C 0.512 3.488 19 O -0.588 6.588 20 C -0.103 4.103 21 H 0.131 0.869 22 C -0.131 4.131 23 C 0.107 3.893 24 N -0.716 5.716 25 C 0.511 3.489 26 O -0.611 6.611 27 C -0.131 4.131 28 C -0.089 4.089 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.010 0.990 39 H 0.022 0.978 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.415 0.585 43 H 0.060 0.940 44 H 0.109 0.891 45 H 0.100 0.900 46 H 0.124 0.876 47 H 0.404 0.596 48 H 0.124 0.876 49 H 0.094 0.906 50 H 0.076 0.924 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.219 -1.043 21.893 26.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.039 3.961 3 H 0.081 0.919 4 C -0.154 4.154 5 C -0.142 4.142 6 C -0.151 4.151 7 C 0.021 3.979 8 N -0.392 5.392 9 C -0.378 4.378 10 H 0.092 0.908 11 C -0.270 4.270 12 N -0.620 5.620 13 Si 0.803 3.197 14 H -0.191 1.191 15 H -0.217 1.217 16 H -0.221 1.221 17 N -0.362 5.362 18 C 0.299 3.701 19 O -0.468 6.468 20 C -0.124 4.124 21 H 0.149 0.851 22 C -0.170 4.170 23 C -0.016 4.016 24 N -0.366 5.366 25 C 0.299 3.701 26 O -0.494 6.494 27 C -0.171 4.171 28 C -0.127 4.127 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.028 0.972 39 H 0.040 0.960 40 H 0.206 0.794 41 H 0.061 0.939 42 H 0.253 0.747 43 H 0.079 0.921 44 H 0.128 0.872 45 H 0.118 0.882 46 H 0.142 0.858 47 H 0.240 0.760 48 H 0.142 0.858 49 H 0.112 0.888 50 H 0.094 0.906 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.294 0.143 22.370 26.547 hybrid contribution 0.442 -0.401 -0.602 0.848 sum -13.852 -0.258 21.767 25.802 Atomic orbital electron populations 1.22107 0.94725 1.02843 1.01829 1.20899 0.94165 0.96653 0.84392 0.91892 1.21833 0.94776 1.02051 0.96724 1.21419 0.95711 1.00001 0.97062 1.21604 0.93686 1.01039 0.98727 1.20875 0.94291 0.94166 0.88530 1.42652 1.04498 1.65388 1.26688 1.19688 0.85364 1.27446 1.05342 0.90791 1.25607 1.02190 1.01340 0.97911 1.69821 1.34580 1.42030 1.15602 0.85055 0.79963 0.77092 0.77545 1.19074 1.21744 1.22070 1.46051 1.66524 1.14719 1.08927 1.21155 0.76586 0.86776 0.85538 1.90703 1.51926 1.18400 1.85793 1.21106 1.03509 0.96310 0.91444 0.85102 1.21864 0.98614 0.95061 1.01428 1.22068 1.01304 0.98798 0.79459 1.46047 1.44124 1.22950 1.23456 1.21058 0.82604 0.81539 0.84901 1.90733 1.62870 1.70372 1.25406 1.21985 0.97411 1.00788 0.96919 1.20920 1.00806 0.98303 0.92690 0.94200 0.91055 0.90872 0.90121 0.89458 0.92979 0.90926 0.91633 0.92830 0.97151 0.96006 0.79440 0.93947 0.74724 0.92139 0.87237 0.88186 0.85831 0.76020 0.85759 0.88770 0.90572 0.93615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.48 71.99 0.68 -1.57 16 2 C 0.14 2.23 2.57 45.00 0.12 2.35 16 3 H 0.06 1.34 7.58 -2.39 -0.02 1.32 16 4 C -0.12 -1.70 4.75 30.60 0.15 -1.56 16 5 C -0.10 -2.08 5.10 30.60 0.16 -1.93 16 6 C -0.11 -3.17 5.33 30.60 0.16 -3.01 16 7 C 0.15 5.68 6.26 86.38 0.54 6.22 16 8 N -0.75 -37.98 5.60 -343.44 -1.92 -39.91 16 9 C -0.25 -13.79 9.99 84.04 0.84 -12.95 16 10 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 11 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 12 N -0.97 -58.94 13.06 21.65 0.28 -58.66 16 13 Si 0.97 45.68 29.55 68.60 2.03 47.71 16 14 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 15 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 16 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 17 N -0.71 -8.63 4.33 -442.54 -1.91 -10.54 16 18 C 0.51 8.41 7.10 87.66 0.62 9.03 16 19 O -0.59 -15.71 15.41 -3.03 -0.05 -15.75 16 20 C -0.10 -0.93 2.05 -12.34 -0.03 -0.95 16 21 H 0.13 0.50 7.87 -2.39 -0.02 0.48 16 22 C -0.13 -0.55 4.94 30.17 0.15 -0.40 16 23 C 0.11 0.15 6.46 86.23 0.56 0.71 16 24 N -0.72 -6.41 5.27 -462.68 -2.44 -8.85 16 25 C 0.51 8.61 7.06 88.11 0.62 9.23 16 26 O -0.61 -16.98 17.92 -3.02 -0.05 -17.03 16 27 C -0.13 -1.53 5.58 30.10 0.17 -1.37 16 28 C -0.09 -1.25 4.31 30.22 0.13 -1.12 16 29 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.29 7.75 -2.39 -0.02 1.27 16 36 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 39 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.37 19.98 7.67 -92.71 -0.71 19.27 16 41 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 42 H 0.42 2.49 7.59 -92.71 -0.70 1.79 16 43 H 0.06 0.52 8.05 -2.39 -0.02 0.50 16 44 H 0.11 -0.04 6.96 -2.39 -0.02 -0.06 16 45 H 0.10 -0.12 6.71 -2.39 -0.02 -0.14 16 46 H 0.12 -0.44 8.14 -2.38 -0.02 -0.45 16 47 H 0.40 3.22 8.91 -92.71 -0.83 2.40 16 48 H 0.12 0.62 6.77 -2.38 -0.02 0.61 16 49 H 0.09 1.27 8.13 -2.39 -0.02 1.25 16 50 H 0.08 1.28 7.75 -2.39 -0.02 1.26 16 51 H 0.04 0.89 7.86 -2.39 -0.02 0.87 16 Total: -1.00 -82.55 404.26 -0.04 -82.60 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -1.31 Total: 21.77 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 5.33 Total: -1.33 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -6.00 Total: -117.96 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -0.10 Total: -32.79 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -82.55 -0.04 -82.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171922900.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.814 kcal (2) G-P(sol) polarization free energy of solvation -82.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds