Wall clock time and date at job start Fri Apr 10 2020 18:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47281 * 2 1 4 4 C 1.53001 * 109.47194 * 239.99145 * 2 1 3 5 5 C 1.53000 * 109.46886 * 175.00077 * 4 2 1 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 4 2 7 7 C 1.52992 * 109.47482 * 180.02562 * 6 5 4 8 8 N 1.46507 * 109.47485 * 179.97438 * 7 6 5 9 9 C 1.36939 * 119.99912 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99934 * 359.97438 * 9 8 7 11 11 C 1.38807 * 119.99541 * 180.02562 * 9 8 7 12 12 N 1.31625 * 119.99723 * 180.02562 * 11 9 8 13 13 Si 1.86795 * 120.00499 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.46949 * 90.00318 * 13 11 9 15 15 H 1.48497 * 109.47376 * 210.00444 * 13 11 9 16 16 H 1.48503 * 109.46992 * 330.00913 * 13 11 9 17 17 N 1.46502 * 109.46861 * 119.99657 * 2 1 3 18 18 C 1.34774 * 120.00144 * 275.00142 * 17 2 1 19 19 O 1.21282 * 119.99907 * 359.97438 * 18 17 2 20 20 C 1.50696 * 120.00466 * 179.97438 * 18 17 2 21 21 C 1.53000 * 109.60308 * 300.32457 * 20 18 17 22 22 C 1.53347 * 109.60669 * 179.97438 * 20 18 17 23 23 C 1.53072 * 108.42569 * 172.71221 * 22 20 18 24 24 C 1.50183 * 109.89035 * 48.90496 * 23 22 20 25 25 O 1.21278 * 118.24360 * 162.44016 * 24 23 22 26 26 N 1.33348 * 123.50699 * 342.41287 * 24 23 22 27 27 C 1.45759 * 124.10680 * 2.22705 * 26 24 23 28 28 H 1.09002 * 109.46818 * 60.00551 * 1 2 3 29 29 H 1.09004 * 109.47242 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47237 * 300.00371 * 1 2 3 31 31 H 1.09001 * 109.46652 * 55.00422 * 4 2 1 32 32 H 1.08992 * 109.47514 * 295.00511 * 4 2 1 33 33 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 34 34 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 35 35 H 1.09002 * 109.47153 * 300.00319 * 6 5 4 36 36 H 1.08998 * 109.47533 * 59.99948 * 6 5 4 37 37 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 38 38 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 39 39 H 0.96992 * 119.99570 * 0.02562 * 8 7 6 40 40 H 0.96993 * 119.99898 * 179.97438 * 12 11 9 41 41 H 0.97001 * 120.00062 * 94.99942 * 17 2 1 42 42 H 1.08997 * 109.46997 * 59.99563 * 21 20 18 43 43 H 1.08996 * 109.47442 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.46758 * 299.99703 * 21 20 18 45 45 H 1.09000 * 109.67610 * 292.44528 * 22 20 18 46 46 H 1.09002 * 109.67266 * 52.98617 * 22 20 18 47 47 H 1.08998 * 109.39873 * 169.03214 * 23 22 20 48 48 H 1.09003 * 109.40227 * 288.77960 * 23 22 20 49 49 H 0.97000 * 117.94757 * 182.22117 * 26 24 23 50 50 H 1.09007 * 109.30039 * 220.60924 * 27 26 24 51 51 H 1.09002 * 109.29896 * 101.23792 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5648 -0.6135 -1.3135 6 6 4.0748 -1.3343 -2.5629 7 6 5.5996 -1.2269 -2.6271 8 7 6.0881 -1.9178 -3.8232 9 6 7.4302 -1.9550 -4.0922 10 1 8.1287 -1.4748 -3.4229 11 6 7.8929 -2.6091 -5.2258 12 7 9.1830 -2.6454 -5.4842 13 14 6.6848 -3.4390 -6.3838 14 1 6.2504 -2.4710 -7.4228 15 1 7.3412 -4.6016 -7.0339 16 1 5.5022 -3.9040 -5.6153 17 7 2.0183 -0.6906 1.1962 18 6 2.1469 -0.0182 2.3572 19 8 1.8589 1.1587 2.4115 20 6 2.6486 -0.7286 3.5879 21 6 1.7105 -1.8879 3.9297 22 6 2.7021 0.2544 4.7636 23 6 3.0371 -0.5296 6.0349 24 6 4.2203 -1.4211 5.7885 25 8 4.8170 -1.8613 6.7482 26 7 4.6495 -1.7551 4.5709 27 6 4.0583 -1.2636 3.3326 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6054 -0.2619 -2.1369 32 1 1.7516 -1.7716 -1.2054 33 1 3.8532 0.4368 -1.3572 34 1 3.9995 -1.0729 -0.4258 35 1 3.7864 -2.3846 -2.5196 36 1 3.6403 -0.8746 -3.4506 37 1 5.8884 -0.1768 -2.6702 38 1 6.0339 -1.6871 -1.7395 39 1 5.4607 -2.3487 -4.4244 40 1 9.5063 -3.1027 -6.2760 41 1 2.2489 -1.6317 1.1528 42 1 1.6790 -2.5880 3.0948 43 1 2.0755 -2.4004 4.8197 44 1 0.7088 -1.5013 4.1177 45 1 3.4724 1.0036 4.5808 46 1 1.7343 0.7427 4.8780 47 1 3.2706 0.1678 6.8394 48 1 2.1792 -1.1376 6.3220 49 1 5.4024 -2.3631 4.5052 50 1 4.0092 -2.0774 2.6090 51 1 4.6796 -0.4640 2.9293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174875398.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:44 Heat of formation + Delta-G solvation = -89.403634 kcal Electronic energy + Delta-G solvation = -28177.991541 eV Core-core repulsion = 24304.408731 eV Total energy + Delta-G solvation = -3873.582810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.49823 -39.90179 -37.57643 -36.76086 -35.51650 -33.82768 -33.44862 -32.12217 -31.04359 -30.22364 -27.85109 -27.55177 -25.19498 -24.46789 -23.51132 -21.97680 -21.24877 -20.98678 -20.81442 -18.95124 -17.92099 -17.53054 -17.14715 -16.61960 -16.35403 -15.84750 -15.50399 -15.25174 -15.03127 -14.71383 -14.45291 -14.27026 -14.10314 -13.80616 -13.65430 -13.31529 -13.12850 -12.98553 -12.76394 -12.75024 -12.57370 -12.31577 -12.08727 -11.98598 -11.74558 -11.60298 -11.51778 -11.35382 -11.22984 -10.94988 -10.89432 -10.48902 -10.40192 -10.15239 -10.14055 -10.07847 -9.61482 -9.53283 -9.40688 -8.91591 -7.25135 -5.78857 -3.14449 2.18338 2.26473 2.68559 2.89829 3.34539 3.37287 3.42737 3.86165 4.00805 4.08886 4.17879 4.37149 4.52488 4.56869 4.65323 4.74828 4.80781 4.84027 4.87523 5.01815 5.09906 5.12345 5.16576 5.23079 5.25970 5.33878 5.41468 5.44363 5.47279 5.52416 5.55112 5.58875 5.67618 5.73284 5.78779 5.93949 6.00792 6.04956 6.11039 6.21583 6.28655 6.34379 6.71910 6.75989 6.87989 7.10682 7.81278 7.82573 7.97758 8.40453 9.19671 9.92078 10.12044 11.39690 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.013006 B = 0.002458 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.370981 B =11388.416367 C =12999.775196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.090 0.910 4 C -0.128 4.128 5 C -0.114 4.114 6 C -0.130 4.130 7 C 0.157 3.843 8 N -0.758 5.758 9 C -0.245 4.245 10 H 0.089 0.911 11 C 0.002 3.998 12 N -0.935 5.935 13 Si 0.887 3.113 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.278 1.278 17 N -0.719 5.719 18 C 0.530 3.470 19 O -0.531 6.531 20 C -0.096 4.096 21 C -0.144 4.144 22 C -0.099 4.099 23 C -0.137 4.137 24 C 0.519 3.481 25 O -0.557 6.557 26 N -0.715 5.715 27 C 0.121 3.879 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.025 0.975 38 H 0.023 0.977 39 H 0.360 0.640 40 H 0.259 0.741 41 H 0.400 0.600 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.105 0.895 48 H 0.103 0.897 49 H 0.405 0.595 50 H 0.086 0.914 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.562 3.345 19.871 29.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.108 0.892 4 C -0.166 4.166 5 C -0.152 4.152 6 C -0.168 4.168 7 C 0.030 3.970 8 N -0.404 5.404 9 C -0.375 4.375 10 H 0.107 0.893 11 C -0.193 4.193 12 N -0.583 5.583 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.204 1.204 17 N -0.371 5.371 18 C 0.315 3.685 19 O -0.407 6.407 20 C -0.100 4.100 21 C -0.202 4.202 22 C -0.137 4.137 23 C -0.177 4.177 24 C 0.307 3.693 25 O -0.435 6.435 26 N -0.368 5.368 27 C -0.004 4.004 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.043 0.957 38 H 0.041 0.959 39 H 0.193 0.807 40 H 0.070 0.930 41 H 0.235 0.765 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.107 0.893 47 H 0.123 0.877 48 H 0.121 0.879 49 H 0.241 0.759 50 H 0.104 0.896 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.407 4.178 20.431 29.885 hybrid contribution -0.328 -1.369 -1.221 1.864 sum -21.735 2.808 19.210 29.143 Atomic orbital electron populations 1.22172 0.95283 1.02096 1.02572 1.21075 0.93822 0.97786 0.83722 0.89156 1.21948 0.96836 1.00941 0.96841 1.21512 0.93953 1.01276 0.98458 1.21782 0.97323 1.00273 0.97425 1.20621 0.90713 0.95707 0.89997 1.42738 1.05273 1.66136 1.26229 1.19078 0.82298 1.29370 1.06746 0.89286 1.24696 0.95638 1.00713 0.98279 1.69707 1.11720 1.48274 1.28585 0.86514 0.80848 0.79449 0.81502 1.21071 1.21714 1.20380 1.46146 1.67137 1.14142 1.09643 1.20085 0.77575 0.86980 0.83896 1.90726 1.49660 1.15626 1.84652 1.21128 0.96081 0.97673 0.95113 1.21939 0.99067 0.96279 1.02897 1.21535 1.04536 0.96658 0.91008 1.21740 0.96903 0.99146 0.99875 1.20202 0.85638 0.81075 0.82421 1.90783 1.57310 1.55119 1.40321 1.45373 1.36179 1.49832 1.05395 1.21386 0.92329 1.00249 0.86433 0.91478 0.92483 0.92238 0.90153 0.91350 0.91722 0.92027 0.92185 0.92065 0.95716 0.95861 0.80737 0.93047 0.76508 0.91534 0.91110 0.91232 0.90200 0.89326 0.87669 0.87856 0.75922 0.89620 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.48 37.16 0.35 -0.76 16 2 C 0.14 1.04 2.58 -67.93 -0.17 0.86 16 3 H 0.09 0.85 7.58 -51.93 -0.39 0.45 16 4 C -0.13 -0.95 4.75 -26.73 -0.13 -1.08 16 5 C -0.11 -1.12 5.10 -26.73 -0.14 -1.26 16 6 C -0.13 -1.75 5.33 -26.74 -0.14 -1.89 16 7 C 0.16 2.91 6.26 -4.04 -0.03 2.88 16 8 N -0.76 -17.97 5.41 -59.91 -0.32 -18.29 16 9 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 10 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 11 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 12 N -0.93 -29.46 13.97 55.49 0.78 -28.68 16 13 Si 0.89 21.97 27.74 -169.99 -4.71 17.26 16 14 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 17 N -0.72 -4.58 4.34 -53.81 -0.23 -4.81 16 18 C 0.53 4.20 6.43 -10.99 -0.07 4.13 16 19 O -0.53 -6.23 15.56 5.56 0.09 -6.14 16 20 C -0.10 -0.56 0.62 -155.52 -0.10 -0.66 16 21 C -0.14 -0.63 7.76 37.16 0.29 -0.34 16 22 C -0.10 -0.63 4.34 -26.51 -0.12 -0.75 16 23 C -0.14 -0.86 5.39 -28.10 -0.15 -1.01 16 24 C 0.52 4.70 6.91 -11.87 -0.08 4.62 16 25 O -0.56 -7.49 17.78 5.56 0.10 -7.39 16 26 N -0.72 -4.98 5.32 -61.38 -0.33 -5.30 16 27 C 0.12 0.67 5.70 -4.48 -0.03 0.65 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.56 7.75 -51.93 -0.40 0.16 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.36 8.26 5.53 -40.82 -0.23 8.03 16 40 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 41 H 0.40 1.77 7.68 -40.82 -0.31 1.46 16 42 H 0.07 0.22 7.56 -51.93 -0.39 -0.17 16 43 H 0.07 0.33 5.80 -51.93 -0.30 0.03 16 44 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.08 0.59 8.13 -51.93 -0.42 0.17 16 46 H 0.09 0.58 7.90 -51.93 -0.41 0.17 16 47 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.10 0.51 6.96 -51.93 -0.36 0.15 16 49 H 0.40 2.67 8.80 -40.82 -0.36 2.31 16 50 H 0.09 0.33 7.86 -51.92 -0.41 -0.08 16 51 H 0.08 0.48 8.11 -51.93 -0.42 0.06 16 LS Contribution 401.21 15.07 6.05 6.05 Total: -1.00 -36.36 401.21 -8.43 -44.79 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -9.08 Total: 4.30 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -0.76 Total: -1.78 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -0.11 Total: -57.09 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.19 Total: -13.53 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.26 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.36 -8.43 -44.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174875398.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.612 kcal (2) G-P(sol) polarization free energy of solvation -36.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds