Wall clock time and date at job start Fri Apr 10 2020 18:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47281 * 2 1 4 4 C 1.53001 * 109.47194 * 239.99145 * 2 1 3 5 5 C 1.53000 * 109.46886 * 175.00077 * 4 2 1 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 4 2 7 7 C 1.52992 * 109.47482 * 180.02562 * 6 5 4 8 8 N 1.46507 * 109.47485 * 179.97438 * 7 6 5 9 9 C 1.36939 * 119.99912 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99934 * 359.97438 * 9 8 7 11 11 C 1.38807 * 119.99541 * 180.02562 * 9 8 7 12 12 N 1.31625 * 119.99723 * 180.02562 * 11 9 8 13 13 Si 1.86795 * 120.00499 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.46949 * 90.00318 * 13 11 9 15 15 H 1.48497 * 109.47376 * 210.00444 * 13 11 9 16 16 H 1.48503 * 109.46992 * 330.00913 * 13 11 9 17 17 N 1.46502 * 109.46861 * 119.99657 * 2 1 3 18 18 C 1.34774 * 120.00144 * 275.00142 * 17 2 1 19 19 O 1.21282 * 119.99907 * 359.97438 * 18 17 2 20 20 C 1.50696 * 120.00466 * 179.97438 * 18 17 2 21 21 C 1.53000 * 109.60308 * 300.32457 * 20 18 17 22 22 C 1.53347 * 109.60669 * 179.97438 * 20 18 17 23 23 C 1.53072 * 108.42569 * 172.71221 * 22 20 18 24 24 C 1.50183 * 109.89035 * 48.90496 * 23 22 20 25 25 O 1.21278 * 118.24360 * 162.44016 * 24 23 22 26 26 N 1.33348 * 123.50699 * 342.41287 * 24 23 22 27 27 C 1.45759 * 124.10680 * 2.22705 * 26 24 23 28 28 H 1.09002 * 109.46818 * 60.00551 * 1 2 3 29 29 H 1.09004 * 109.47242 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47237 * 300.00371 * 1 2 3 31 31 H 1.09001 * 109.46652 * 55.00422 * 4 2 1 32 32 H 1.08992 * 109.47514 * 295.00511 * 4 2 1 33 33 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 34 34 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 35 35 H 1.09002 * 109.47153 * 300.00319 * 6 5 4 36 36 H 1.08998 * 109.47533 * 59.99948 * 6 5 4 37 37 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 38 38 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 39 39 H 0.96992 * 119.99570 * 0.02562 * 8 7 6 40 40 H 0.96993 * 119.99898 * 179.97438 * 12 11 9 41 41 H 0.97001 * 120.00062 * 94.99942 * 17 2 1 42 42 H 1.08997 * 109.46997 * 59.99563 * 21 20 18 43 43 H 1.08996 * 109.47442 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.46758 * 299.99703 * 21 20 18 45 45 H 1.09000 * 109.67610 * 292.44528 * 22 20 18 46 46 H 1.09002 * 109.67266 * 52.98617 * 22 20 18 47 47 H 1.08998 * 109.39873 * 169.03214 * 23 22 20 48 48 H 1.09003 * 109.40227 * 288.77960 * 23 22 20 49 49 H 0.97000 * 117.94757 * 182.22117 * 26 24 23 50 50 H 1.09007 * 109.30039 * 220.60924 * 27 26 24 51 51 H 1.09002 * 109.29896 * 101.23792 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5648 -0.6135 -1.3135 6 6 4.0748 -1.3343 -2.5629 7 6 5.5996 -1.2269 -2.6271 8 7 6.0881 -1.9178 -3.8232 9 6 7.4302 -1.9550 -4.0922 10 1 8.1287 -1.4748 -3.4229 11 6 7.8929 -2.6091 -5.2258 12 7 9.1830 -2.6454 -5.4842 13 14 6.6848 -3.4390 -6.3838 14 1 6.2504 -2.4710 -7.4228 15 1 7.3412 -4.6016 -7.0339 16 1 5.5022 -3.9040 -5.6153 17 7 2.0183 -0.6906 1.1962 18 6 2.1469 -0.0182 2.3572 19 8 1.8589 1.1587 2.4115 20 6 2.6486 -0.7286 3.5879 21 6 1.7105 -1.8879 3.9297 22 6 2.7021 0.2544 4.7636 23 6 3.0371 -0.5296 6.0349 24 6 4.2203 -1.4211 5.7885 25 8 4.8170 -1.8613 6.7482 26 7 4.6495 -1.7551 4.5709 27 6 4.0583 -1.2636 3.3326 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6054 -0.2619 -2.1369 32 1 1.7516 -1.7716 -1.2054 33 1 3.8532 0.4368 -1.3572 34 1 3.9995 -1.0729 -0.4258 35 1 3.7864 -2.3846 -2.5196 36 1 3.6403 -0.8746 -3.4506 37 1 5.8884 -0.1768 -2.6702 38 1 6.0339 -1.6871 -1.7395 39 1 5.4607 -2.3487 -4.4244 40 1 9.5063 -3.1027 -6.2760 41 1 2.2489 -1.6317 1.1528 42 1 1.6790 -2.5880 3.0948 43 1 2.0755 -2.4004 4.8197 44 1 0.7088 -1.5013 4.1177 45 1 3.4724 1.0036 4.5808 46 1 1.7343 0.7427 4.8780 47 1 3.2706 0.1678 6.8394 48 1 2.1792 -1.1376 6.3220 49 1 5.4024 -2.3631 4.5052 50 1 4.0092 -2.0774 2.6090 51 1 4.6796 -0.4640 2.9293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174875398.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:43 Heat of formation + Delta-G solvation = -116.508281 kcal Electronic energy + Delta-G solvation = -28179.166887 eV Core-core repulsion = 24304.408731 eV Total energy + Delta-G solvation = -3874.758156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.10031 -40.59500 -38.32559 -37.61463 -36.88586 -34.78540 -34.41064 -33.33263 -32.36836 -30.92952 -29.02261 -27.99440 -25.84129 -25.68307 -24.35162 -23.33227 -22.20671 -21.94946 -21.47563 -19.65414 -19.47508 -18.50982 -17.77224 -17.26133 -17.00755 -16.62918 -16.50928 -16.18227 -16.08945 -15.80763 -15.57756 -15.10454 -14.86824 -14.81528 -14.59547 -14.43378 -14.11262 -14.09685 -13.58575 -13.41261 -13.19688 -13.08939 -12.95038 -12.91642 -12.87332 -12.57088 -12.45692 -12.23085 -12.11935 -12.04402 -11.87454 -11.85603 -11.72382 -11.46988 -11.39285 -10.96646 -10.86355 -10.75206 -10.17558 -10.03150 -9.30333 -8.03815 -5.37919 1.37718 1.42669 1.50260 1.54887 1.58874 2.11767 2.31906 2.48634 3.27551 3.37766 3.46519 3.53753 3.61170 3.64870 3.92462 4.02109 4.09053 4.12348 4.15495 4.33809 4.38504 4.43999 4.47131 4.58053 4.61727 4.67927 4.68646 4.79478 4.81119 4.88808 4.91213 4.95360 4.97898 5.01914 5.06529 5.10028 5.16588 5.25439 5.29469 5.37199 5.46606 5.54273 5.63275 5.74516 5.75216 6.20748 6.24892 6.57599 7.07728 7.14270 7.26094 7.84357 8.03950 9.17919 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.013006 B = 0.002458 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.370981 B =11388.416367 C =12999.775196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.143 3.857 3 H 0.067 0.933 4 C -0.117 4.117 5 C -0.108 4.108 6 C -0.117 4.117 7 C 0.149 3.851 8 N -0.761 5.761 9 C -0.240 4.240 10 H 0.052 0.948 11 C -0.069 4.069 12 N -0.986 5.986 13 Si 0.962 3.038 14 H -0.278 1.278 15 H -0.296 1.296 16 H -0.246 1.246 17 N -0.708 5.708 18 C 0.532 3.468 19 O -0.573 6.573 20 C -0.089 4.089 21 C -0.142 4.142 22 C -0.096 4.096 23 C -0.129 4.129 24 C 0.516 3.484 25 O -0.607 6.607 26 N -0.707 5.707 27 C 0.119 3.881 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.014 0.986 38 H 0.023 0.977 39 H 0.367 0.633 40 H 0.258 0.742 41 H 0.413 0.587 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.107 0.893 48 H 0.122 0.878 49 H 0.407 0.593 50 H 0.112 0.888 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.691 1.895 19.316 31.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.039 3.961 3 H 0.086 0.914 4 C -0.155 4.155 5 C -0.146 4.146 6 C -0.155 4.155 7 C 0.024 3.976 8 N -0.407 5.407 9 C -0.371 4.371 10 H 0.070 0.930 11 C -0.260 4.260 12 N -0.637 5.637 13 Si 0.788 3.212 14 H -0.204 1.204 15 H -0.222 1.222 16 H -0.170 1.170 17 N -0.360 5.360 18 C 0.317 3.683 19 O -0.451 6.451 20 C -0.093 4.093 21 C -0.199 4.199 22 C -0.134 4.134 23 C -0.169 4.169 24 C 0.305 3.695 25 O -0.490 6.490 26 N -0.357 5.357 27 C -0.005 4.005 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.032 0.968 38 H 0.041 0.959 39 H 0.200 0.800 40 H 0.067 0.933 41 H 0.250 0.750 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.107 0.893 47 H 0.125 0.875 48 H 0.140 0.860 49 H 0.243 0.757 50 H 0.130 0.870 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.583 2.722 19.869 31.725 hybrid contribution 0.721 -0.824 -1.016 1.494 sum -23.862 1.898 18.853 30.470 Atomic orbital electron populations 1.22112 0.94477 1.02870 1.02103 1.20967 0.94355 0.96771 0.84038 0.91437 1.21848 0.94617 1.02135 0.96865 1.21447 0.95833 1.00218 0.97096 1.21673 0.93032 1.01544 0.99238 1.20866 0.94529 0.94327 0.87921 1.42769 1.03423 1.66602 1.27924 1.19063 0.84132 1.28066 1.05858 0.93028 1.25625 0.97699 1.02142 1.00523 1.69905 1.14346 1.49926 1.29490 0.85310 0.79046 0.77893 0.78936 1.20397 1.22230 1.17001 1.46065 1.66301 1.14677 1.08947 1.20359 0.76864 0.86452 0.84594 1.90716 1.51612 1.17515 1.85302 1.21062 0.96523 0.97858 0.93842 1.21950 0.98646 0.95731 1.03578 1.21476 1.03995 0.96552 0.91389 1.21721 0.96375 0.98902 0.99865 1.20642 0.85843 0.80752 0.82257 1.90760 1.59065 1.57231 1.41920 1.45367 1.35885 1.49083 1.05396 1.21520 0.91911 1.00983 0.86091 0.90900 0.91008 0.93833 0.89664 0.89431 0.92778 0.91094 0.91026 0.91857 0.96763 0.95926 0.79952 0.93287 0.74952 0.89805 0.91175 0.90930 0.91641 0.89331 0.87464 0.86024 0.75706 0.87025 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.48 71.98 0.68 -1.07 16 2 C 0.14 1.78 2.58 44.99 0.12 1.89 16 3 H 0.07 1.19 7.58 -2.39 -0.02 1.18 16 4 C -0.12 -1.32 4.75 30.59 0.15 -1.17 16 5 C -0.11 -1.82 5.10 30.59 0.16 -1.66 16 6 C -0.12 -2.78 5.33 30.59 0.16 -2.62 16 7 C 0.15 5.34 6.26 86.38 0.54 5.88 16 8 N -0.76 -34.98 5.41 -343.45 -1.86 -36.84 16 9 C -0.24 -13.81 10.47 84.03 0.88 -12.93 16 10 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 11 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 12 N -0.99 -63.50 13.97 21.65 0.30 -63.20 16 13 Si 0.96 44.63 27.74 68.60 1.90 46.53 16 14 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 15 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 16 H -0.25 -10.01 6.52 99.48 0.65 -9.36 16 17 N -0.71 -7.15 4.34 -442.54 -1.92 -9.07 16 18 C 0.53 7.60 6.43 87.66 0.56 8.16 16 19 O -0.57 -13.20 15.56 -3.03 -0.05 -13.25 16 20 C -0.09 -0.88 0.62 -52.84 -0.03 -0.92 16 21 C -0.14 -0.86 7.76 71.98 0.56 -0.30 16 22 C -0.10 -1.16 4.34 30.73 0.13 -1.03 16 23 C -0.13 -1.52 5.39 29.71 0.16 -1.36 16 24 C 0.52 9.12 6.91 87.72 0.61 9.73 16 25 O -0.61 -16.56 17.78 -3.02 -0.05 -16.62 16 26 N -0.71 -9.10 5.32 -467.30 -2.49 -11.59 16 27 C 0.12 1.10 5.70 86.49 0.49 1.60 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.07 7.75 -2.39 -0.02 1.05 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 37 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.37 15.74 5.53 -92.71 -0.51 15.22 16 40 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 41 H 0.41 2.04 7.68 -92.71 -0.71 1.33 16 42 H 0.08 0.23 7.56 -2.39 -0.02 0.21 16 43 H 0.07 0.48 5.80 -2.39 -0.01 0.46 16 44 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 46 H 0.09 1.10 7.90 -2.39 -0.02 1.08 16 47 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.12 1.00 6.96 -2.39 -0.02 0.99 16 49 H 0.41 5.01 8.80 -92.71 -0.82 4.19 16 50 H 0.11 0.49 7.86 -2.38 -0.02 0.47 16 51 H 0.07 0.79 8.11 -2.39 -0.02 0.77 16 Total: -1.00 -81.37 401.21 0.31 -81.07 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -1.17 Total: 22.33 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 5.63 Total: 0.63 kcal Atomic # 7 Polarization: -114.73 SS G_CDS: -5.96 Total: -120.69 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.10 Total: -29.86 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.90 Total: 46.53 kcal Total: -81.37 0.31 -81.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174875398.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.441 kcal (2) G-P(sol) polarization free energy of solvation -81.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds