Wall clock time and date at job start Fri Apr 10 2020 18:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34777 * 119.99790 * 2 1 4 4 O 1.21281 * 120.00153 * 5.14021 * 3 2 1 5 5 C 1.50705 * 119.99907 * 184.86336 * 3 2 1 6 6 C 1.50694 * 112.84715 * 44.42354 * 5 3 2 7 7 O 1.21283 * 119.99640 * 245.29996 * 6 5 3 8 8 N 1.34774 * 120.00164 * 65.30865 * 6 5 3 9 9 C 1.46505 * 120.00017 * 174.88069 * 8 6 5 10 10 H 1.09001 * 109.46753 * 34.99915 * 9 8 6 11 11 C 1.52998 * 109.46879 * 275.00028 * 9 8 6 12 12 C 1.52998 * 109.47127 * 154.99577 * 9 8 6 13 13 C 1.52993 * 109.47295 * 295.00202 * 12 9 8 14 14 C 1.52998 * 109.47295 * 180.02562 * 13 12 9 15 15 C 1.52998 * 109.47553 * 179.97438 * 14 13 12 16 16 N 1.46497 * 109.47376 * 179.97438 * 15 14 13 17 17 C 1.36937 * 120.00120 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00164 * 0.02562 * 17 16 15 19 19 C 1.38812 * 120.00180 * 180.02562 * 17 16 15 20 20 N 1.31614 * 120.00373 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 120.00058 * 0.02562 * 19 17 16 22 22 H 1.48508 * 109.46874 * 89.99464 * 21 19 17 23 23 H 1.48495 * 109.47488 * 209.99844 * 21 19 17 24 24 H 1.48507 * 109.46937 * 330.00198 * 21 19 17 25 25 C 1.53779 * 113.61456 * 273.11525 * 5 3 2 26 26 C 1.53781 * 87.08233 * 220.02046 * 25 5 3 27 27 C 1.53784 * 113.61208 * 175.61604 * 5 3 2 28 28 H 1.09007 * 109.46491 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47441 * 300.00080 * 1 2 3 30 30 H 1.09004 * 109.46744 * 60.00518 * 1 2 3 31 31 H 0.97000 * 120.00431 * 179.97438 * 2 1 3 32 32 H 0.96996 * 120.00492 * 354.87813 * 8 6 5 33 33 H 1.09001 * 109.47335 * 299.99530 * 11 9 8 34 34 H 1.08999 * 109.47209 * 60.00163 * 11 9 8 35 35 H 1.09001 * 109.46712 * 179.97438 * 11 9 8 36 36 H 1.09003 * 109.46982 * 55.00674 * 12 9 8 37 37 H 1.09001 * 109.46999 * 175.00117 * 12 9 8 38 38 H 1.09005 * 109.47006 * 299.99971 * 13 12 9 39 39 H 1.09001 * 109.47166 * 60.00017 * 13 12 9 40 40 H 1.09005 * 109.47070 * 299.99931 * 14 13 12 41 41 H 1.09001 * 109.47312 * 59.99467 * 14 13 12 42 42 H 1.08995 * 109.47027 * 299.99974 * 15 14 13 43 43 H 1.09001 * 109.46854 * 60.00051 * 15 14 13 44 44 H 0.97001 * 119.99957 * 0.02562 * 16 15 14 45 45 H 0.97003 * 120.00400 * 180.02562 * 20 19 17 46 46 H 1.08999 * 113.61326 * 334.56595 * 25 5 3 47 47 H 1.08991 * 113.61753 * 105.47086 * 25 5 3 48 48 H 1.08996 * 113.61321 * 270.88766 * 26 25 5 49 49 H 1.08998 * 113.69506 * 139.99101 * 26 25 5 50 50 H 1.08991 * 113.61672 * 254.52954 * 27 5 3 51 51 H 1.09006 * 113.61361 * 25.35391 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5361 2.2154 0.0941 5 6 3.6418 1.1696 -0.1107 6 6 4.1525 0.2208 -1.1642 7 8 4.8193 -0.7400 -0.8430 8 7 3.8683 0.4401 -2.4633 9 6 4.4564 -0.4162 -3.4964 10 1 4.5407 -1.4353 -3.1189 11 6 5.8460 0.1083 -3.8633 12 6 3.5625 -0.4047 -4.7380 13 6 2.2140 -1.0442 -4.4016 14 6 1.3203 -1.0332 -5.6434 15 6 -0.0281 -1.6733 -5.3071 16 7 -0.8840 -1.6622 -6.4960 17 6 -2.1474 -2.1869 -6.4351 18 1 -2.5130 -2.6085 -5.5105 19 6 -2.9582 -2.1769 -7.5618 20 7 -4.1723 -2.6816 -7.5034 21 14 -2.3256 -1.4482 -9.1613 22 1 -1.6560 -2.5082 -9.9574 23 1 -3.4636 -0.8917 -9.9361 24 1 -1.3539 -0.3658 -8.8621 25 6 4.3594 1.0344 1.2427 26 6 5.3686 2.0715 0.7223 27 6 4.2504 2.5788 -0.2036 28 1 -0.3632 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.9501 -0.8400 0.0004 32 1 3.2745 1.1647 -2.7143 33 1 5.7617 1.1274 -4.2408 34 1 6.4828 0.1000 -2.9787 35 1 6.2837 -0.5290 -4.6316 36 1 3.4059 0.6238 -5.0634 37 1 4.0431 -0.9693 -5.5370 38 1 2.3707 -2.0727 -4.0762 39 1 1.7333 -0.4796 -3.6026 40 1 1.1636 -0.0048 -5.9691 41 1 1.8011 -1.5980 -6.4421 42 1 0.1290 -2.7016 -4.9817 43 1 -0.5091 -1.1088 -4.5083 44 1 -0.5555 -1.2838 -7.3266 45 1 -4.7387 -2.6749 -8.2908 46 1 3.7678 1.3868 2.0877 47 1 4.7934 0.0488 1.4103 48 1 6.2110 1.6315 0.1889 49 1 5.6765 2.7985 1.4739 50 1 4.5965 2.8399 -1.2036 51 1 3.6283 3.3536 0.2447 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176278096.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:56 Heat of formation + Delta-G solvation = -60.301904 kcal Electronic energy + Delta-G solvation = -28596.893967 eV Core-core repulsion = 24724.573103 eV Total energy + Delta-G solvation = -3872.320864 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.61258 -39.42370 -37.90360 -36.81017 -35.48059 -34.86616 -33.38001 -31.74865 -30.69167 -28.73161 -27.82425 -26.27163 -25.84451 -24.32917 -22.80163 -21.65311 -21.30780 -20.98627 -20.82518 -19.56529 -18.62716 -17.51946 -16.76632 -16.70276 -16.12783 -15.59014 -15.41806 -15.11397 -14.86061 -14.68364 -14.52421 -14.14553 -13.85625 -13.62903 -13.38927 -13.19184 -13.11384 -12.91699 -12.75528 -12.55826 -12.47295 -12.29566 -11.96797 -11.79956 -11.70519 -11.51103 -11.42048 -11.21675 -10.92726 -10.88007 -10.87200 -10.45938 -10.38927 -10.29582 -10.11842 -9.95428 -9.59711 -9.43687 -9.39020 -8.89636 -7.23100 -5.77163 -3.12481 2.08418 2.19187 2.71170 2.87761 3.36705 3.39398 3.44457 4.00977 4.02523 4.20927 4.32689 4.36611 4.45727 4.58803 4.75158 4.84869 4.90943 5.10966 5.12283 5.21217 5.24733 5.27637 5.33020 5.36667 5.44408 5.48317 5.48781 5.53873 5.55747 5.56839 5.60780 5.64972 5.73770 5.80586 5.90044 5.95952 6.03686 6.05549 6.07051 6.13892 6.23292 6.31386 6.74304 6.78548 7.06655 7.12481 7.76653 7.83833 7.99352 8.42096 9.21463 9.94022 10.14193 11.41382 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.015111 B = 0.002703 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.513505 B =10358.145049 C =11553.818278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.728 5.728 3 C 0.533 3.467 4 O -0.528 6.528 5 C -0.140 4.140 6 C 0.543 3.457 7 O -0.528 6.528 8 N -0.714 5.714 9 C 0.140 3.860 10 H 0.092 0.908 11 C -0.163 4.163 12 C -0.128 4.128 13 C -0.113 4.113 14 C -0.130 4.130 15 C 0.158 3.842 16 N -0.758 5.758 17 C -0.244 4.244 18 H 0.089 0.911 19 C 0.003 3.997 20 N -0.935 5.935 21 Si 0.886 3.114 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C -0.105 4.105 26 C -0.140 4.140 27 C -0.106 4.106 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.404 0.596 32 H 0.402 0.598 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.025 0.975 43 H 0.023 0.977 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.093 0.907 47 H 0.092 0.908 48 H 0.085 0.915 49 H 0.078 0.922 50 H 0.076 0.924 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.772 9.153 16.389 29.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.379 5.379 3 C 0.317 3.683 4 O -0.403 6.403 5 C -0.147 4.147 6 C 0.328 3.672 7 O -0.404 6.404 8 N -0.366 5.366 9 C 0.036 3.964 10 H 0.110 0.890 11 C -0.221 4.221 12 C -0.166 4.166 13 C -0.152 4.152 14 C -0.168 4.168 15 C 0.031 3.969 16 N -0.404 5.404 17 C -0.374 4.374 18 H 0.107 0.893 19 C -0.193 4.193 20 N -0.583 5.583 21 Si 0.716 3.284 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.143 4.143 26 C -0.178 4.178 27 C -0.143 4.143 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.238 0.762 32 H 0.237 0.763 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.042 0.958 43 H 0.041 0.959 44 H 0.193 0.807 45 H 0.069 0.931 46 H 0.111 0.889 47 H 0.110 0.890 48 H 0.103 0.897 49 H 0.097 0.903 50 H 0.095 0.905 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 22.584 9.096 16.738 29.545 hybrid contribution 0.063 0.365 -1.438 1.485 sum 22.647 9.461 15.299 28.922 Atomic orbital electron populations 1.21646 0.78614 1.03014 1.02664 1.45846 1.08332 1.08597 1.75079 1.19889 0.88097 0.83989 0.76302 1.90727 1.69351 1.31359 1.48901 1.22425 0.93192 0.99964 0.99117 1.19507 0.79935 0.84910 0.82888 1.90718 1.39132 1.29213 1.81378 1.46078 1.49635 1.35243 1.05616 1.21103 0.92495 0.95317 0.87492 0.89005 1.22180 0.96397 1.01620 1.01940 1.21947 0.95952 1.02150 0.96534 1.21502 0.94311 1.01005 0.98336 1.21781 0.96388 1.01207 0.97416 1.20606 0.88730 0.97355 0.90247 1.42737 1.14773 1.73964 1.08878 1.19074 0.88625 1.31434 0.98281 0.89301 1.24688 0.96004 1.00953 0.97666 1.69701 1.08200 1.51042 1.29372 0.86519 0.77852 0.79140 0.84853 1.21077 1.21707 1.20363 1.22790 0.96766 1.01855 0.92902 1.22860 0.96891 0.98535 0.99465 1.22889 0.96898 0.93097 1.01462 0.90132 0.92004 0.91583 0.76211 0.76294 0.92362 0.92296 0.91333 0.91320 0.90067 0.91769 0.92082 0.92182 0.92056 0.95756 0.95895 0.80733 0.93062 0.88888 0.88980 0.89677 0.90315 0.90523 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.71 59.85 0.64 1.40 16 2 N -0.73 -6.70 5.55 -67.07 -0.37 -7.07 16 3 C 0.53 5.61 6.95 -10.98 -0.08 5.53 16 4 O -0.53 -7.19 15.89 5.56 0.09 -7.10 16 5 C -0.14 -1.22 1.10 -156.00 -0.17 -1.39 16 6 C 0.54 5.19 5.83 -10.99 -0.06 5.12 16 7 O -0.53 -6.41 15.58 5.56 0.09 -6.32 16 8 N -0.71 -5.99 4.53 -53.81 -0.24 -6.23 16 9 C 0.14 1.17 2.62 -67.93 -0.18 0.99 16 10 H 0.09 0.91 7.51 -51.93 -0.39 0.52 16 11 C -0.16 -1.21 9.48 37.16 0.35 -0.86 16 12 C -0.13 -1.09 4.75 -26.74 -0.13 -1.22 16 13 C -0.11 -1.25 5.10 -26.74 -0.14 -1.39 16 14 C -0.13 -1.87 5.33 -26.73 -0.14 -2.01 16 15 C 0.16 3.03 6.26 -4.04 -0.03 3.01 16 16 N -0.76 -18.36 5.41 -59.91 -0.32 -18.68 16 17 C -0.24 -7.05 10.47 -15.06 -0.16 -7.21 16 18 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 19 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 20 N -0.94 -29.68 13.97 55.49 0.78 -28.91 16 21 Si 0.89 22.30 27.74 -169.99 -4.71 17.58 16 22 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 24 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 25 C -0.11 -0.80 7.08 -25.92 -0.18 -0.98 16 26 C -0.14 -0.94 7.81 -25.92 -0.20 -1.14 16 27 C -0.11 -0.80 7.02 -25.91 -0.18 -0.98 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.40 3.28 8.41 -40.82 -0.34 2.94 16 32 H 0.40 3.14 8.61 -40.82 -0.35 2.79 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.36 8.47 5.53 -40.82 -0.23 8.24 16 45 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 46 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16 47 H 0.09 0.75 7.35 -51.93 -0.38 0.37 16 48 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 51 H 0.11 0.89 7.38 -51.93 -0.38 0.50 16 LS Contribution 412.63 15.07 6.22 6.22 Total: -1.00 -34.80 412.63 -8.49 -43.29 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -9.25 Total: 8.38 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -0.75 Total: -1.15 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -0.16 Total: -60.89 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.17 Total: -13.42 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.71 Total: 17.58 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.80 -8.49 -43.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176278096.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.014 kcal (2) G-P(sol) polarization free energy of solvation -34.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds