Wall clock time and date at job start Fri Apr 10 2020 18:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34777 * 119.99790 * 2 1 4 4 O 1.21281 * 120.00153 * 5.14021 * 3 2 1 5 5 C 1.50705 * 119.99907 * 184.86336 * 3 2 1 6 6 C 1.50694 * 112.84715 * 44.42354 * 5 3 2 7 7 O 1.21283 * 119.99640 * 245.29996 * 6 5 3 8 8 N 1.34774 * 120.00164 * 65.30865 * 6 5 3 9 9 C 1.46505 * 120.00017 * 174.88069 * 8 6 5 10 10 H 1.09001 * 109.46753 * 34.99915 * 9 8 6 11 11 C 1.52998 * 109.46879 * 275.00028 * 9 8 6 12 12 C 1.52998 * 109.47127 * 154.99577 * 9 8 6 13 13 C 1.52993 * 109.47295 * 295.00202 * 12 9 8 14 14 C 1.52998 * 109.47295 * 180.02562 * 13 12 9 15 15 C 1.52998 * 109.47553 * 179.97438 * 14 13 12 16 16 N 1.46497 * 109.47376 * 179.97438 * 15 14 13 17 17 C 1.36937 * 120.00120 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00164 * 0.02562 * 17 16 15 19 19 C 1.38812 * 120.00180 * 180.02562 * 17 16 15 20 20 N 1.31614 * 120.00373 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 120.00058 * 0.02562 * 19 17 16 22 22 H 1.48508 * 109.46874 * 89.99464 * 21 19 17 23 23 H 1.48495 * 109.47488 * 209.99844 * 21 19 17 24 24 H 1.48507 * 109.46937 * 330.00198 * 21 19 17 25 25 C 1.53779 * 113.61456 * 273.11525 * 5 3 2 26 26 C 1.53781 * 87.08233 * 220.02046 * 25 5 3 27 27 C 1.53784 * 113.61208 * 175.61604 * 5 3 2 28 28 H 1.09007 * 109.46491 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47441 * 300.00080 * 1 2 3 30 30 H 1.09004 * 109.46744 * 60.00518 * 1 2 3 31 31 H 0.97000 * 120.00431 * 179.97438 * 2 1 3 32 32 H 0.96996 * 120.00492 * 354.87813 * 8 6 5 33 33 H 1.09001 * 109.47335 * 299.99530 * 11 9 8 34 34 H 1.08999 * 109.47209 * 60.00163 * 11 9 8 35 35 H 1.09001 * 109.46712 * 179.97438 * 11 9 8 36 36 H 1.09003 * 109.46982 * 55.00674 * 12 9 8 37 37 H 1.09001 * 109.46999 * 175.00117 * 12 9 8 38 38 H 1.09005 * 109.47006 * 299.99971 * 13 12 9 39 39 H 1.09001 * 109.47166 * 60.00017 * 13 12 9 40 40 H 1.09005 * 109.47070 * 299.99931 * 14 13 12 41 41 H 1.09001 * 109.47312 * 59.99467 * 14 13 12 42 42 H 1.08995 * 109.47027 * 299.99974 * 15 14 13 43 43 H 1.09001 * 109.46854 * 60.00051 * 15 14 13 44 44 H 0.97001 * 119.99957 * 0.02562 * 16 15 14 45 45 H 0.97003 * 120.00400 * 180.02562 * 20 19 17 46 46 H 1.08999 * 113.61326 * 334.56595 * 25 5 3 47 47 H 1.08991 * 113.61753 * 105.47086 * 25 5 3 48 48 H 1.08996 * 113.61321 * 270.88766 * 26 25 5 49 49 H 1.08998 * 113.69506 * 139.99101 * 26 25 5 50 50 H 1.08991 * 113.61672 * 254.52954 * 27 5 3 51 51 H 1.09006 * 113.61361 * 25.35391 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5361 2.2154 0.0941 5 6 3.6418 1.1696 -0.1107 6 6 4.1525 0.2208 -1.1642 7 8 4.8193 -0.7400 -0.8430 8 7 3.8683 0.4401 -2.4633 9 6 4.4564 -0.4162 -3.4964 10 1 4.5407 -1.4353 -3.1189 11 6 5.8460 0.1083 -3.8633 12 6 3.5625 -0.4047 -4.7380 13 6 2.2140 -1.0442 -4.4016 14 6 1.3203 -1.0332 -5.6434 15 6 -0.0281 -1.6733 -5.3071 16 7 -0.8840 -1.6622 -6.4960 17 6 -2.1474 -2.1869 -6.4351 18 1 -2.5130 -2.6085 -5.5105 19 6 -2.9582 -2.1769 -7.5618 20 7 -4.1723 -2.6816 -7.5034 21 14 -2.3256 -1.4482 -9.1613 22 1 -1.6560 -2.5082 -9.9574 23 1 -3.4636 -0.8917 -9.9361 24 1 -1.3539 -0.3658 -8.8621 25 6 4.3594 1.0344 1.2427 26 6 5.3686 2.0715 0.7223 27 6 4.2504 2.5788 -0.2036 28 1 -0.3632 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.9501 -0.8400 0.0004 32 1 3.2745 1.1647 -2.7143 33 1 5.7617 1.1274 -4.2408 34 1 6.4828 0.1000 -2.9787 35 1 6.2837 -0.5290 -4.6316 36 1 3.4059 0.6238 -5.0634 37 1 4.0431 -0.9693 -5.5370 38 1 2.3707 -2.0727 -4.0762 39 1 1.7333 -0.4796 -3.6026 40 1 1.1636 -0.0048 -5.9691 41 1 1.8011 -1.5980 -6.4421 42 1 0.1290 -2.7016 -4.9817 43 1 -0.5091 -1.1088 -4.5083 44 1 -0.5555 -1.2838 -7.3266 45 1 -4.7387 -2.6749 -8.2908 46 1 3.7678 1.3868 2.0877 47 1 4.7934 0.0488 1.4103 48 1 6.2110 1.6315 0.1889 49 1 5.6765 2.7985 1.4739 50 1 4.5965 2.8399 -1.2036 51 1 3.6283 3.3536 0.2447 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176278096.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:55 Heat of formation + Delta-G solvation = -85.119508 kcal Electronic energy + Delta-G solvation = -28597.970139 eV Core-core repulsion = 24724.573103 eV Total energy + Delta-G solvation = -3873.397036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.35278 -40.24571 -38.65082 -37.78065 -36.90222 -35.71529 -34.81649 -33.27164 -31.95668 -29.48694 -29.04692 -26.93669 -26.51261 -25.78607 -23.87645 -23.02660 -22.17328 -22.05320 -21.63050 -20.27594 -19.62951 -19.37290 -17.51531 -17.42339 -16.95266 -16.64761 -16.43138 -16.24258 -16.06901 -15.86023 -15.42543 -15.36275 -14.89750 -14.71757 -14.50279 -14.31277 -14.16041 -13.99513 -13.55744 -13.55392 -13.26033 -13.11511 -12.98253 -12.93952 -12.93538 -12.49922 -12.48982 -12.28711 -12.09857 -11.99764 -11.89807 -11.79255 -11.53436 -11.49411 -11.44582 -11.05957 -10.98670 -10.78189 -10.26030 -10.13408 -9.32509 -8.05134 -5.39317 1.28800 1.36530 1.39763 1.41009 1.48565 2.01204 2.12671 2.47112 3.26078 3.35140 3.37413 3.45464 3.57905 3.66877 3.75202 3.90107 4.00443 4.05939 4.28893 4.33053 4.37795 4.43157 4.55158 4.55904 4.62117 4.63383 4.74515 4.77572 4.85655 4.89022 4.90652 4.92515 4.96092 4.96312 4.99475 5.01544 5.09363 5.23275 5.24858 5.32130 5.35780 5.39408 5.47328 5.53869 5.72698 6.19152 6.30183 6.40158 6.98844 7.05826 7.08174 7.82125 8.01903 9.16469 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.015111 B = 0.002703 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.513505 B =10358.145049 C =11553.818278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.722 5.722 3 C 0.532 3.468 4 O -0.562 6.562 5 C -0.140 4.140 6 C 0.547 3.453 7 O -0.555 6.555 8 N -0.708 5.708 9 C 0.143 3.857 10 H 0.077 0.923 11 C -0.157 4.157 12 C -0.118 4.118 13 C -0.106 4.106 14 C -0.117 4.117 15 C 0.152 3.848 16 N -0.761 5.761 17 C -0.241 4.241 18 H 0.053 0.947 19 C -0.067 4.067 20 N -0.985 5.985 21 Si 0.960 3.040 22 H -0.276 1.276 23 H -0.295 1.295 24 H -0.249 1.249 25 C -0.105 4.105 26 C -0.131 4.131 27 C -0.103 4.103 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.410 0.590 32 H 0.407 0.593 33 H 0.068 0.932 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.019 0.981 43 H 0.017 0.983 44 H 0.367 0.633 45 H 0.259 0.741 46 H 0.098 0.902 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.095 0.905 50 H 0.085 0.915 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.322 10.394 15.446 31.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.373 5.373 3 C 0.318 3.682 4 O -0.440 6.440 5 C -0.146 4.146 6 C 0.332 3.668 7 O -0.433 6.433 8 N -0.359 5.359 9 C 0.039 3.961 10 H 0.095 0.905 11 C -0.216 4.216 12 C -0.156 4.156 13 C -0.144 4.144 14 C -0.155 4.155 15 C 0.026 3.974 16 N -0.407 5.407 17 C -0.372 4.372 18 H 0.071 0.929 19 C -0.258 4.258 20 N -0.635 5.635 21 Si 0.787 3.213 22 H -0.202 1.202 23 H -0.221 1.221 24 H -0.174 1.174 25 C -0.143 4.143 26 C -0.168 4.168 27 C -0.141 4.141 28 H 0.117 0.883 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.245 0.755 32 H 0.242 0.758 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.037 0.963 43 H 0.035 0.965 44 H 0.200 0.800 45 H 0.068 0.932 46 H 0.116 0.884 47 H 0.104 0.896 48 H 0.101 0.899 49 H 0.113 0.887 50 H 0.104 0.896 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 25.182 10.335 15.811 31.479 hybrid contribution -0.783 -0.098 -1.034 1.301 sum 24.399 10.237 14.776 30.306 Atomic orbital electron populations 1.21681 0.78532 1.04021 1.01853 1.45872 1.08504 1.08668 1.74222 1.20189 0.88798 0.83660 0.75562 1.90710 1.70170 1.32477 1.50654 1.22451 0.91838 1.00711 0.99632 1.19560 0.79478 0.84504 0.83238 1.90710 1.40493 1.30289 1.81795 1.46078 1.49286 1.35150 1.05369 1.21071 0.93196 0.94640 0.87210 0.90487 1.22124 0.95250 1.02420 1.01765 1.21866 0.94268 1.02720 0.96769 1.21414 0.95092 1.01214 0.96672 1.21673 0.93881 1.00916 0.99064 1.20822 0.90592 0.97503 0.88482 1.42766 1.13674 1.73546 1.10714 1.19060 0.90532 1.30607 0.96951 0.92906 1.25600 0.96226 1.02062 1.01942 1.69894 1.09962 1.53091 1.30562 0.85330 0.77600 0.79040 0.79337 1.20183 1.22141 1.17375 1.22821 0.96977 1.01969 0.92493 1.22821 0.96266 0.98297 0.99446 1.22887 0.96914 0.92096 1.02199 0.88250 0.92137 0.93059 0.75496 0.75751 0.91323 0.93444 0.90266 0.90143 0.88902 0.92081 0.92363 0.91617 0.91338 0.96297 0.96460 0.79994 0.93247 0.88389 0.89574 0.89871 0.88673 0.89642 0.88129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.48 10.71 127.77 1.37 2.84 16 2 N -0.72 -13.04 5.55 -484.50 -2.69 -15.73 16 3 C 0.53 10.99 6.95 87.66 0.61 11.60 16 4 O -0.56 -15.28 15.89 -3.03 -0.05 -15.33 16 5 C -0.14 -2.31 1.10 -53.15 -0.06 -2.37 16 6 C 0.55 9.86 5.83 87.66 0.51 10.37 16 7 O -0.55 -13.01 15.58 -3.04 -0.05 -13.06 16 8 N -0.71 -10.69 4.53 -442.54 -2.00 -12.69 16 9 C 0.14 2.08 2.62 44.99 0.12 2.20 16 10 H 0.08 1.41 7.51 -2.39 -0.02 1.39 16 11 C -0.16 -1.94 9.48 71.98 0.68 -1.26 16 12 C -0.12 -1.66 4.75 30.59 0.15 -1.52 16 13 C -0.11 -2.09 5.10 30.59 0.16 -1.94 16 14 C -0.12 -3.08 5.33 30.59 0.16 -2.92 16 15 C 0.15 5.70 6.26 86.38 0.54 6.24 16 16 N -0.76 -36.05 5.41 -343.46 -1.86 -37.90 16 17 C -0.24 -14.05 10.47 84.03 0.88 -13.17 16 18 H 0.05 3.39 8.06 -2.91 -0.02 3.36 16 19 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 20 N -0.98 -63.86 13.97 21.65 0.30 -63.56 16 21 Si 0.96 45.47 27.74 68.60 1.90 47.37 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 24 H -0.25 -10.53 6.52 99.48 0.65 -9.88 16 25 C -0.10 -1.50 7.08 31.12 0.22 -1.27 16 26 C -0.13 -1.54 7.81 31.12 0.24 -1.30 16 27 C -0.10 -1.43 7.02 31.12 0.22 -1.21 16 28 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.41 6.44 8.41 -92.71 -0.78 5.66 16 32 H 0.41 5.58 8.61 -92.71 -0.80 4.78 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.06 1.19 7.75 -2.39 -0.02 1.17 16 40 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.37 16.29 5.53 -92.71 -0.51 15.78 16 45 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 46 H 0.10 1.30 8.09 -2.39 -0.02 1.28 16 47 H 0.09 1.35 7.35 -2.39 -0.02 1.34 16 48 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 49 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 50 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 51 H 0.10 1.57 7.38 -2.38 -0.02 1.55 16 Total: -1.00 -75.91 412.63 0.60 -75.31 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: -1.22 Total: 32.82 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 6.26 Total: 2.78 kcal Atomic # 7 Polarization: -123.64 SS G_CDS: -6.25 Total: -129.89 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.10 Total: -28.39 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.90 Total: 47.37 kcal Total: -75.91 0.60 -75.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176278096.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.808 kcal (2) G-P(sol) polarization free energy of solvation -75.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds