Wall clock time and date at job start Fri Apr 10 2020 18:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08989 * 109.47047 * 2 1 4 4 C 1.53006 * 109.46877 * 120.00056 * 2 1 3 5 5 C 1.52997 * 109.46736 * 185.00027 * 4 2 1 6 6 C 1.52997 * 109.46863 * 180.02562 * 5 4 2 7 7 C 1.53007 * 109.47242 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.47110 * 179.97438 * 7 6 5 9 9 C 1.36939 * 119.99501 * 179.72706 * 8 7 6 10 10 H 1.07996 * 119.99997 * 359.97438 * 9 8 7 11 11 C 1.38817 * 119.99688 * 179.97438 * 9 8 7 12 12 N 1.31616 * 119.99853 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99872 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47049 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46794 * 119.99948 * 13 11 9 16 16 H 1.48497 * 109.47072 * 239.99810 * 13 11 9 17 17 N 1.46499 * 109.47118 * 239.99769 * 2 1 3 18 18 C 1.34782 * 119.99882 * 84.99999 * 17 2 1 19 19 O 1.21278 * 119.99856 * 0.02562 * 18 17 2 20 20 C 1.50697 * 119.99937 * 179.97438 * 18 17 2 21 21 H 1.09000 * 109.29834 * 327.64809 * 20 18 17 22 22 C 1.52923 * 109.30029 * 87.02874 * 20 18 17 23 23 C 1.53345 * 108.67445 * 171.06378 * 22 20 18 24 24 C 1.53072 * 108.42367 * 292.47275 * 23 22 20 25 25 C 1.50170 * 109.89365 * 48.89681 * 24 23 22 26 26 O 1.21285 * 118.24384 * 162.39631 * 25 24 23 27 27 N 1.33350 * 123.51059 * 342.41956 * 25 24 23 28 28 C 1.46504 * 117.94688 * 182.24348 * 27 25 24 29 29 H 1.09001 * 109.47202 * 299.99795 * 1 2 3 30 30 H 1.08997 * 109.46680 * 60.00556 * 1 2 3 31 31 H 1.09002 * 109.46823 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46999 * 64.99753 * 4 2 1 33 33 H 1.09003 * 109.46750 * 304.99986 * 4 2 1 34 34 H 1.08997 * 109.47091 * 60.00117 * 5 4 2 35 35 H 1.09003 * 109.47467 * 299.99520 * 5 4 2 36 36 H 1.09002 * 109.47620 * 59.99987 * 6 5 4 37 37 H 1.09004 * 109.47375 * 299.99727 * 6 5 4 38 38 H 1.08997 * 109.46878 * 60.00004 * 7 6 5 39 39 H 1.08991 * 109.47022 * 299.99963 * 7 6 5 40 40 H 0.96995 * 120.00096 * 359.97438 * 8 7 6 41 41 H 0.97000 * 120.00081 * 180.02562 * 12 11 9 42 42 H 0.97001 * 119.99924 * 265.00237 * 17 2 1 43 43 H 1.09000 * 109.59955 * 290.82040 * 22 20 18 44 44 H 1.09003 * 109.60022 * 51.30927 * 22 20 18 45 45 H 1.08990 * 109.67373 * 172.73389 * 23 22 20 46 46 H 1.08998 * 109.70516 * 52.21928 * 23 22 20 47 47 H 1.09002 * 109.39758 * 288.77042 * 24 23 22 48 48 H 1.09004 * 109.32814 * 168.98613 * 24 23 22 49 49 H 1.09003 * 109.46862 * 204.74361 * 28 27 25 50 50 H 1.08999 * 109.47292 * 324.73883 * 28 27 25 51 51 H 1.08999 * 109.47029 * 84.74627 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0748 -1.3351 2.5626 7 6 5.5998 -1.2277 2.6268 8 7 6.0881 -1.9183 3.8230 9 6 7.4307 -1.9599 4.0894 10 1 8.1295 -1.4840 3.4175 11 6 7.8933 -2.6139 5.2231 12 7 7.0415 -3.1934 6.0421 13 14 9.7248 -2.6712 5.5862 14 1 10.4637 -1.9491 4.5195 15 1 9.9901 -2.0244 6.8963 16 1 10.1763 -4.0851 5.6317 17 7 2.0184 -0.6907 -1.1961 18 6 2.1471 -0.0183 -2.3572 19 8 1.8591 1.1585 -2.4115 20 6 2.6500 -0.7286 -3.5874 21 1 3.3588 -1.5023 -3.2923 22 6 1.4713 -1.3789 -4.3129 23 6 1.9581 -1.9024 -5.6695 24 6 2.3193 -0.7031 -6.5495 25 6 3.1997 0.2441 -5.7861 26 8 3.8372 1.0652 -6.4110 27 7 3.3185 0.2304 -4.4579 28 6 4.1742 1.2432 -3.8347 29 1 -0.3634 0.5138 0.8900 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7516 -1.7715 1.2056 33 1 1.6054 -0.2617 2.1370 34 1 3.8532 0.4369 1.3574 35 1 3.9995 -1.0729 0.4260 36 1 3.7865 -2.3854 2.5185 37 1 3.6403 -0.8760 3.4506 38 1 5.8885 -0.1776 2.6707 39 1 6.0340 -1.6871 1.7389 40 1 5.4607 -2.3492 4.4243 41 1 7.3648 -3.6501 6.8345 42 1 2.2491 -1.6318 -1.1525 43 1 1.0876 -2.2074 -3.7175 44 1 0.6843 -0.6406 -4.4668 45 1 1.1664 -2.4813 -6.1450 46 1 2.8371 -2.5309 -5.5270 47 1 1.4074 -0.1871 -6.8503 48 1 2.8471 -1.0527 -7.4369 49 1 4.5287 0.8764 -2.8714 50 1 5.0272 1.4466 -4.4822 51 1 3.6035 2.1599 -3.6868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176391602.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:06 Heat of formation + Delta-G solvation = -82.219513 kcal Electronic energy + Delta-G solvation = -27946.280367 eV Core-core repulsion = 24073.009084 eV Total energy + Delta-G solvation = -3873.271283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.35665 -39.75029 -37.34246 -36.47031 -35.34557 -34.42137 -33.35508 -31.91859 -30.59114 -29.89352 -27.51275 -27.43727 -25.62673 -24.24619 -22.75835 -22.41402 -21.36574 -20.87063 -20.70582 -19.08894 -17.92336 -17.16040 -17.01486 -16.84284 -16.36264 -15.62545 -15.35737 -14.98194 -14.77590 -14.68786 -14.39014 -14.13835 -13.97913 -13.87404 -13.58212 -13.19844 -13.03561 -13.01267 -12.76917 -12.51518 -12.44936 -12.39827 -12.02069 -11.84167 -11.59322 -11.52770 -11.47901 -11.31984 -11.05626 -10.84651 -10.76677 -10.47920 -10.43933 -10.35625 -9.99469 -9.93128 -9.69802 -9.40563 -9.00064 -8.88295 -6.92501 -5.77554 -3.06003 2.08749 2.26236 2.56048 2.89324 3.42465 3.48161 3.50456 4.02988 4.05228 4.10471 4.24146 4.40608 4.51543 4.61341 4.65229 4.80473 4.86175 4.89382 5.07067 5.13956 5.17021 5.17179 5.30705 5.31739 5.34994 5.36908 5.45477 5.49799 5.55359 5.58390 5.62465 5.70801 5.76127 5.81150 5.87714 5.94863 6.02456 6.12638 6.24929 6.27929 6.34486 6.41765 6.85717 6.89695 7.01247 7.14491 7.69722 7.78256 7.86221 8.41879 9.52744 10.11635 10.46061 11.45603 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.014283 B = 0.002172 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.948012 B =12888.984319 C =14033.194241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.089 0.911 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.934 5.934 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.717 5.717 18 C 0.505 3.495 19 O -0.525 6.525 20 C 0.127 3.873 21 H 0.098 0.902 22 C -0.127 4.127 23 C -0.122 4.122 24 C -0.136 4.136 25 C 0.518 3.482 26 O -0.550 6.550 27 N -0.587 5.587 28 C 0.082 3.918 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.016 0.984 39 H 0.015 0.985 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.402 0.598 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.101 0.899 48 H 0.103 0.897 49 H 0.066 0.934 50 H 0.076 0.924 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.683 1.650 -22.453 28.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.107 0.893 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.583 5.583 13 Si 0.738 3.262 14 H -0.205 1.205 15 H -0.218 1.218 16 H -0.218 1.218 17 N -0.369 5.369 18 C 0.289 3.711 19 O -0.400 6.400 20 C 0.019 3.981 21 H 0.115 0.885 22 C -0.165 4.165 23 C -0.159 4.159 24 C -0.175 4.175 25 C 0.307 3.693 26 O -0.428 6.428 27 N -0.320 5.320 28 C -0.061 4.061 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.216 0.784 41 H 0.064 0.936 42 H 0.237 0.763 43 H 0.111 0.889 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.095 0.905 47 H 0.119 0.881 48 H 0.121 0.879 49 H 0.085 0.915 50 H 0.095 0.905 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.379 2.977 -22.836 28.851 hybrid contribution 0.883 -0.738 0.739 1.368 sum -16.496 2.240 -22.098 27.667 Atomic orbital electron populations 1.22171 0.95243 1.02132 1.02552 1.21086 0.93821 0.97740 0.83671 0.89270 1.21947 0.96907 1.00970 0.96669 1.21519 0.93899 1.01119 0.98657 1.21730 0.97287 1.00255 0.97097 1.20644 0.90968 0.95342 0.90556 1.42397 1.05322 1.65005 1.25194 1.19295 0.83860 1.28430 1.05355 0.91179 1.24756 0.97764 1.01002 0.97688 1.69669 1.32679 1.41033 1.14965 0.86108 0.85043 0.77234 0.77789 1.20547 1.21837 1.21843 1.46126 1.67098 1.14212 1.09488 1.20672 0.78282 0.87638 0.84506 1.90741 1.48950 1.15588 1.84699 1.20989 0.96228 0.91342 0.89569 0.88461 1.21868 0.96320 1.01249 0.97043 1.21666 1.02554 0.97261 0.94465 1.21690 1.00652 0.95856 0.99325 1.20133 0.82541 0.85110 0.81510 1.90734 1.46010 1.39655 1.66450 1.46913 1.46906 1.32398 1.05791 1.21747 0.94742 0.91921 0.97664 0.91427 0.92332 0.92396 0.91245 0.90104 0.91979 0.92204 0.92112 0.92024 0.96590 0.96669 0.78352 0.93578 0.76335 0.88886 0.90083 0.89754 0.90542 0.88093 0.87880 0.91495 0.90521 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 9.48 37.16 0.35 -0.85 16 2 C 0.14 1.15 2.58 -67.92 -0.17 0.97 16 3 H 0.09 0.92 7.58 -51.94 -0.39 0.52 16 4 C -0.13 -1.07 4.75 -26.73 -0.13 -1.19 16 5 C -0.11 -1.26 5.10 -26.73 -0.14 -1.40 16 6 C -0.13 -1.89 5.33 -26.73 -0.14 -2.03 16 7 C 0.15 3.04 6.26 -4.04 -0.03 3.02 16 8 N -0.74 -18.88 5.60 -59.91 -0.34 -19.22 16 9 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 10 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 11 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 12 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 13 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 17 N -0.72 -5.04 4.53 -53.80 -0.24 -5.28 16 18 C 0.51 4.47 5.96 -10.98 -0.07 4.40 16 19 O -0.52 -6.71 14.66 5.56 0.08 -6.63 16 20 C 0.13 0.87 3.07 -69.53 -0.21 0.66 16 21 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 22 C -0.13 -0.58 5.29 -26.59 -0.14 -0.72 16 23 C -0.12 -0.46 6.03 -26.52 -0.16 -0.62 16 24 C -0.14 -0.85 6.03 -28.10 -0.17 -1.02 16 25 C 0.52 5.53 7.47 -11.88 -0.09 5.44 16 26 O -0.55 -8.14 16.27 5.55 0.09 -8.05 16 27 N -0.59 -5.76 2.95 -176.51 -0.52 -6.28 16 28 C 0.08 0.89 8.66 59.85 0.52 1.40 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.63 7.75 -51.93 -0.40 0.23 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.38 10.26 7.67 -40.82 -0.31 9.94 16 41 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.40 1.92 8.60 -40.82 -0.35 1.57 16 43 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 45 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 46 H 0.08 0.27 8.13 -51.93 -0.42 -0.15 16 47 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.07 0.65 7.54 -51.93 -0.39 0.26 16 50 H 0.08 0.87 7.31 -51.93 -0.38 0.49 16 51 H 0.07 0.84 7.42 -51.93 -0.39 0.46 16 LS Contribution 407.82 15.07 6.15 6.15 Total: -1.00 -36.26 407.82 -9.25 -45.51 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -9.35 Total: 3.43 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -0.82 Total: 0.58 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -0.38 Total: -58.49 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.17 Total: -14.68 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.26 -9.25 -45.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176391602.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.710 kcal (2) G-P(sol) polarization free energy of solvation -36.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds