Wall clock time and date at job start Fri Apr 10 2020 18:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08989 * 109.47047 * 2 1 4 4 C 1.53006 * 109.46877 * 120.00056 * 2 1 3 5 5 C 1.52997 * 109.46736 * 185.00027 * 4 2 1 6 6 C 1.52997 * 109.46863 * 180.02562 * 5 4 2 7 7 C 1.53007 * 109.47242 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.47110 * 179.97438 * 7 6 5 9 9 C 1.36939 * 119.99501 * 179.72706 * 8 7 6 10 10 H 1.07996 * 119.99997 * 359.97438 * 9 8 7 11 11 C 1.38817 * 119.99688 * 179.97438 * 9 8 7 12 12 N 1.31616 * 119.99853 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99872 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47049 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46794 * 119.99948 * 13 11 9 16 16 H 1.48497 * 109.47072 * 239.99810 * 13 11 9 17 17 N 1.46499 * 109.47118 * 239.99769 * 2 1 3 18 18 C 1.34782 * 119.99882 * 84.99999 * 17 2 1 19 19 O 1.21278 * 119.99856 * 0.02562 * 18 17 2 20 20 C 1.50697 * 119.99937 * 179.97438 * 18 17 2 21 21 H 1.09000 * 109.29834 * 327.64809 * 20 18 17 22 22 C 1.52923 * 109.30029 * 87.02874 * 20 18 17 23 23 C 1.53345 * 108.67445 * 171.06378 * 22 20 18 24 24 C 1.53072 * 108.42367 * 292.47275 * 23 22 20 25 25 C 1.50170 * 109.89365 * 48.89681 * 24 23 22 26 26 O 1.21285 * 118.24384 * 162.39631 * 25 24 23 27 27 N 1.33350 * 123.51059 * 342.41956 * 25 24 23 28 28 C 1.46504 * 117.94688 * 182.24348 * 27 25 24 29 29 H 1.09001 * 109.47202 * 299.99795 * 1 2 3 30 30 H 1.08997 * 109.46680 * 60.00556 * 1 2 3 31 31 H 1.09002 * 109.46823 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46999 * 64.99753 * 4 2 1 33 33 H 1.09003 * 109.46750 * 304.99986 * 4 2 1 34 34 H 1.08997 * 109.47091 * 60.00117 * 5 4 2 35 35 H 1.09003 * 109.47467 * 299.99520 * 5 4 2 36 36 H 1.09002 * 109.47620 * 59.99987 * 6 5 4 37 37 H 1.09004 * 109.47375 * 299.99727 * 6 5 4 38 38 H 1.08997 * 109.46878 * 60.00004 * 7 6 5 39 39 H 1.08991 * 109.47022 * 299.99963 * 7 6 5 40 40 H 0.96995 * 120.00096 * 359.97438 * 8 7 6 41 41 H 0.97000 * 120.00081 * 180.02562 * 12 11 9 42 42 H 0.97001 * 119.99924 * 265.00237 * 17 2 1 43 43 H 1.09000 * 109.59955 * 290.82040 * 22 20 18 44 44 H 1.09003 * 109.60022 * 51.30927 * 22 20 18 45 45 H 1.08990 * 109.67373 * 172.73389 * 23 22 20 46 46 H 1.08998 * 109.70516 * 52.21928 * 23 22 20 47 47 H 1.09002 * 109.39758 * 288.77042 * 24 23 22 48 48 H 1.09004 * 109.32814 * 168.98613 * 24 23 22 49 49 H 1.09003 * 109.46862 * 204.74361 * 28 27 25 50 50 H 1.08999 * 109.47292 * 324.73883 * 28 27 25 51 51 H 1.08999 * 109.47029 * 84.74627 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0748 -1.3351 2.5626 7 6 5.5998 -1.2277 2.6268 8 7 6.0881 -1.9183 3.8230 9 6 7.4307 -1.9599 4.0894 10 1 8.1295 -1.4840 3.4175 11 6 7.8933 -2.6139 5.2231 12 7 7.0415 -3.1934 6.0421 13 14 9.7248 -2.6712 5.5862 14 1 10.4637 -1.9491 4.5195 15 1 9.9901 -2.0244 6.8963 16 1 10.1763 -4.0851 5.6317 17 7 2.0184 -0.6907 -1.1961 18 6 2.1471 -0.0183 -2.3572 19 8 1.8591 1.1585 -2.4115 20 6 2.6500 -0.7286 -3.5874 21 1 3.3588 -1.5023 -3.2923 22 6 1.4713 -1.3789 -4.3129 23 6 1.9581 -1.9024 -5.6695 24 6 2.3193 -0.7031 -6.5495 25 6 3.1997 0.2441 -5.7861 26 8 3.8372 1.0652 -6.4110 27 7 3.3185 0.2304 -4.4579 28 6 4.1742 1.2432 -3.8347 29 1 -0.3634 0.5138 0.8900 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7516 -1.7715 1.2056 33 1 1.6054 -0.2617 2.1370 34 1 3.8532 0.4369 1.3574 35 1 3.9995 -1.0729 0.4260 36 1 3.7865 -2.3854 2.5185 37 1 3.6403 -0.8760 3.4506 38 1 5.8885 -0.1776 2.6707 39 1 6.0340 -1.6871 1.7389 40 1 5.4607 -2.3492 4.4243 41 1 7.3648 -3.6501 6.8345 42 1 2.2491 -1.6318 -1.1525 43 1 1.0876 -2.2074 -3.7175 44 1 0.6843 -0.6406 -4.4668 45 1 1.1664 -2.4813 -6.1450 46 1 2.8371 -2.5309 -5.5270 47 1 1.4074 -0.1871 -6.8503 48 1 2.8471 -1.0527 -7.4369 49 1 4.5287 0.8764 -2.8714 50 1 5.0272 1.4466 -4.4822 51 1 3.6035 2.1599 -3.6868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176391602.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:04 Heat of formation + Delta-G solvation = -107.500211 kcal Electronic energy + Delta-G solvation = -27947.376621 eV Core-core repulsion = 24073.009084 eV Total energy + Delta-G solvation = -3874.367537 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.05767 -40.51842 -38.21127 -37.31982 -36.76570 -35.08581 -34.73651 -33.11188 -31.96095 -30.58160 -28.80786 -28.18816 -26.27542 -25.84441 -23.77306 -23.26896 -22.29678 -21.98802 -21.52399 -19.68898 -19.13198 -18.59722 -17.82408 -17.59629 -17.07853 -16.69693 -16.40990 -16.24129 -15.83852 -15.43348 -15.31263 -15.24694 -15.00253 -14.82934 -14.44632 -14.42686 -14.17756 -14.03659 -13.59181 -13.34092 -13.17707 -13.04194 -12.98643 -12.89750 -12.84874 -12.59823 -12.44751 -12.24672 -12.11492 -11.99693 -11.88601 -11.84627 -11.79720 -11.48278 -11.38243 -11.25585 -10.95238 -10.68334 -10.11823 -9.79488 -9.01705 -7.97483 -5.26406 1.39236 1.46505 1.47311 1.50355 1.57562 1.88496 2.23222 2.54639 3.36132 3.45595 3.54767 3.63725 3.68075 3.84935 4.02844 4.05217 4.07702 4.15456 4.20575 4.25258 4.37153 4.43842 4.51094 4.54101 4.62152 4.66612 4.77125 4.78242 4.82562 4.84460 4.89489 4.94826 4.95045 5.00935 5.02365 5.04199 5.13675 5.22346 5.28595 5.29696 5.34749 5.45379 5.46336 5.54568 5.59395 6.26017 6.29621 6.54170 7.02410 7.21589 7.31656 8.08668 8.31584 9.26328 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.014283 B = 0.002172 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.948012 B =12888.984319 C =14033.194241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.145 3.855 3 H 0.064 0.936 4 C -0.116 4.116 5 C -0.105 4.105 6 C -0.113 4.113 7 C 0.147 3.853 8 N -0.749 5.749 9 C -0.248 4.248 10 H 0.073 0.927 11 C -0.077 4.077 12 N -0.969 5.969 13 Si 0.974 3.026 14 H -0.268 1.268 15 H -0.292 1.292 16 H -0.290 1.290 17 N -0.704 5.704 18 C 0.505 3.495 19 O -0.571 6.571 20 C 0.123 3.877 21 H 0.126 0.874 22 C -0.123 4.123 23 C -0.113 4.113 24 C -0.132 4.132 25 C 0.508 3.492 26 O -0.604 6.604 27 N -0.589 5.589 28 C 0.086 3.914 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.010 0.990 39 H 0.019 0.981 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.417 0.583 43 H 0.124 0.876 44 H 0.067 0.933 45 H 0.111 0.889 46 H 0.085 0.915 47 H 0.108 0.892 48 H 0.111 0.889 49 H 0.077 0.923 50 H 0.065 0.935 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.542 -0.413 -23.150 29.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.041 3.959 3 H 0.082 0.918 4 C -0.154 4.154 5 C -0.143 4.143 6 C -0.151 4.151 7 C 0.021 3.979 8 N -0.392 5.392 9 C -0.379 4.379 10 H 0.091 0.909 11 C -0.269 4.269 12 N -0.620 5.620 13 Si 0.803 3.197 14 H -0.192 1.192 15 H -0.219 1.219 16 H -0.217 1.217 17 N -0.357 5.357 18 C 0.290 3.710 19 O -0.449 6.449 20 C 0.016 3.984 21 H 0.144 0.856 22 C -0.161 4.161 23 C -0.150 4.150 24 C -0.171 4.171 25 C 0.298 3.702 26 O -0.486 6.486 27 N -0.321 5.321 28 C -0.057 4.057 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.028 0.972 39 H 0.037 0.963 40 H 0.206 0.794 41 H 0.061 0.939 42 H 0.255 0.745 43 H 0.143 0.857 44 H 0.086 0.914 45 H 0.129 0.871 46 H 0.104 0.896 47 H 0.127 0.873 48 H 0.129 0.871 49 H 0.095 0.905 50 H 0.083 0.917 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.257 0.879 -23.539 29.802 hybrid contribution 1.133 -0.044 0.961 1.486 sum -17.124 0.835 -22.578 28.349 Atomic orbital electron populations 1.22103 0.94266 1.03063 1.02017 1.20942 0.94479 0.96568 0.83919 0.91763 1.21842 0.94574 1.02198 0.96780 1.21427 0.95905 0.99987 0.96975 1.21606 0.93581 1.01072 0.98791 1.20869 0.94395 0.94147 0.88462 1.42646 1.04460 1.65401 1.26709 1.19677 0.85315 1.27682 1.05275 0.90924 1.25598 1.02182 1.01309 0.97829 1.69813 1.34562 1.42172 1.15431 0.85063 0.79958 0.77122 0.77565 1.19202 1.21941 1.21681 1.46014 1.66202 1.14823 1.08622 1.21034 0.77530 0.87098 0.85334 1.90736 1.51059 1.17698 1.85425 1.21325 0.97750 0.90835 0.88480 0.85629 1.21945 0.94736 1.01645 0.97765 1.21682 1.03815 0.96117 0.93403 1.21756 0.99879 0.96003 0.99471 1.21056 0.82274 0.85139 0.81684 1.90701 1.48333 1.42016 1.67557 1.47071 1.46492 1.32358 1.06130 1.21576 0.94320 0.91829 0.97947 0.91009 0.93888 0.90648 0.89314 0.89883 0.92943 0.91195 0.91624 0.92658 0.97161 0.96262 0.79390 0.93890 0.74536 0.85740 0.91442 0.87073 0.89590 0.87349 0.87103 0.90464 0.91668 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.48 71.99 0.68 -1.32 16 2 C 0.15 2.12 2.58 45.00 0.12 2.23 16 3 H 0.06 1.30 7.58 -2.39 -0.02 1.28 16 4 C -0.12 -1.64 4.75 30.60 0.15 -1.50 16 5 C -0.10 -2.11 5.10 30.59 0.16 -1.96 16 6 C -0.11 -3.21 5.33 30.60 0.16 -3.04 16 7 C 0.15 5.78 6.26 86.38 0.54 6.32 16 8 N -0.75 -38.43 5.60 -343.45 -1.92 -40.36 16 9 C -0.25 -14.03 9.99 84.03 0.84 -13.19 16 10 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 11 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 12 N -0.97 -59.29 13.06 21.65 0.28 -59.01 16 13 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 15 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 16 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 17 N -0.70 -8.21 4.53 -442.52 -2.00 -10.21 16 18 C 0.50 8.28 5.96 87.66 0.52 8.80 16 19 O -0.57 -14.82 14.66 -3.02 -0.04 -14.87 16 20 C 0.12 1.44 3.07 44.36 0.14 1.57 16 21 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 22 C -0.12 -0.73 5.29 30.68 0.16 -0.56 16 23 C -0.11 -0.46 6.03 30.73 0.19 -0.27 16 24 C -0.13 -1.43 6.03 29.71 0.18 -1.25 16 25 C 0.51 10.87 7.47 87.71 0.66 11.53 16 26 O -0.60 -18.79 16.27 -3.04 -0.05 -18.83 16 27 N -0.59 -11.42 2.95 -831.53 -2.45 -13.87 16 28 C 0.09 1.98 8.66 127.77 1.11 3.09 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.28 7.75 -2.39 -0.02 1.26 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.37 20.17 7.67 -92.71 -0.71 19.46 16 41 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 42 H 0.42 2.40 8.60 -92.71 -0.80 1.60 16 43 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 44 H 0.07 0.63 8.10 -2.39 -0.02 0.61 16 45 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 46 H 0.09 0.25 8.13 -2.39 -0.02 0.23 16 47 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.11 1.04 8.14 -2.38 -0.02 1.03 16 49 H 0.08 1.54 7.54 -2.39 -0.02 1.52 16 50 H 0.06 1.61 7.31 -2.39 -0.02 1.59 16 51 H 0.04 1.23 7.42 -2.39 -0.02 1.22 16 Total: -1.00 -81.39 407.82 1.29 -80.10 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -0.60 Total: 22.37 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 6.06 Total: 6.47 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -6.10 Total: -123.45 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -0.09 Total: -33.70 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -81.39 1.29 -80.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176391602.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.397 kcal (2) G-P(sol) polarization free energy of solvation -81.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds