Wall clock time and date at job start Fri Apr 10 2020 18:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.53006 * 109.47164 * 119.99948 * 2 1 3 5 5 C 1.52997 * 109.47021 * 185.00245 * 4 2 1 6 6 C 1.53006 * 109.47021 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47021 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.46793 * 180.02562 * 7 6 5 9 9 C 1.36930 * 119.99776 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00576 * 359.97438 * 9 8 7 11 11 C 1.38815 * 120.00134 * 180.02562 * 9 8 7 12 12 N 1.31613 * 119.99706 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00334 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47402 * 89.99394 * 13 11 9 15 15 H 1.48498 * 109.47031 * 209.99932 * 13 11 9 16 16 H 1.48496 * 109.46868 * 329.99548 * 13 11 9 17 17 N 1.46500 * 109.47204 * 239.99873 * 2 1 3 18 18 C 1.34775 * 120.00366 * 85.00218 * 17 2 1 19 19 O 1.21282 * 119.99750 * 359.97438 * 18 17 2 20 20 C 1.50699 * 120.00244 * 179.97438 * 18 17 2 21 21 H 1.09000 * 109.29786 * 39.99870 * 20 18 17 22 22 C 1.52918 * 109.29944 * 280.41179 * 20 18 17 23 23 C 1.53277 * 108.71184 * 188.73802 * 22 20 18 24 24 C 1.53062 * 108.24394 * 67.81964 * 23 22 20 25 25 C 1.50183 * 109.89436 * 311.03110 * 24 23 22 26 26 O 1.21280 * 118.24344 * 197.56190 * 25 24 23 27 27 N 1.33352 * 123.50340 * 17.58796 * 25 24 23 28 28 C 1.46496 * 117.94506 * 177.80320 * 27 25 24 29 29 H 1.09002 * 109.46777 * 60.00573 * 1 2 3 30 30 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47375 * 300.00017 * 1 2 3 32 32 H 1.09004 * 109.46579 * 304.99685 * 4 2 1 33 33 H 1.08992 * 109.47046 * 64.99868 * 4 2 1 34 34 H 1.09004 * 109.47446 * 299.99458 * 5 4 2 35 35 H 1.08992 * 109.47518 * 59.99913 * 5 4 2 36 36 H 1.09004 * 109.46568 * 299.99995 * 6 5 4 37 37 H 1.09000 * 109.46904 * 59.99308 * 6 5 4 38 38 H 1.08994 * 109.46931 * 299.99379 * 7 6 5 39 39 H 1.08992 * 109.47518 * 59.99913 * 7 6 5 40 40 H 0.97002 * 120.00077 * 359.97438 * 8 7 6 41 41 H 0.97000 * 120.00455 * 180.02562 * 12 11 9 42 42 H 0.97001 * 119.99882 * 265.00024 * 17 2 1 43 43 H 1.08997 * 109.61089 * 308.69588 * 22 20 18 44 44 H 1.09001 * 109.60183 * 69.18433 * 22 20 18 45 45 H 1.09004 * 109.81664 * 308.10916 * 23 22 20 46 46 H 1.09003 * 109.73321 * 187.48090 * 23 22 20 47 47 H 1.09003 * 109.40139 * 190.90473 * 24 23 22 48 48 H 1.09004 * 109.33329 * 71.12184 * 24 23 22 49 49 H 1.09000 * 109.46847 * 269.97509 * 28 27 25 50 50 H 1.09001 * 109.47374 * 29.96689 * 28 27 25 51 51 H 1.09000 * 109.47606 * 149.97759 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6132 1.3137 6 6 4.0749 -1.3350 2.5627 7 6 5.5996 -1.2265 2.6275 8 7 6.0880 -1.9181 3.8231 9 6 7.4299 -1.9537 4.0932 10 1 8.1284 -1.4723 3.4247 11 6 7.8928 -2.6095 5.2257 12 7 7.0418 -3.1967 6.0401 13 14 9.7236 -2.6588 5.5939 14 1 10.0930 -1.4854 6.4256 15 1 10.0473 -3.9080 6.3286 16 1 10.4858 -2.6221 4.3200 17 7 2.0183 -0.6906 -1.1961 18 6 2.1471 -0.0184 -2.3571 19 8 1.8583 1.1583 -2.4118 20 6 2.6500 -0.7287 -3.5874 21 1 2.2142 -1.7268 -3.6305 22 6 4.1732 -0.8448 -3.5168 23 6 4.6894 -1.3670 -4.8623 24 6 4.4533 -0.2849 -5.9187 25 6 3.0387 0.2124 -5.8337 26 8 2.5862 0.8204 -6.7805 27 7 2.2540 0.0217 -4.7725 28 6 0.9092 0.6021 -4.8000 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6054 -0.2616 2.1370 33 1 1.7516 -1.7714 1.2057 34 1 3.9995 -1.0728 0.4260 35 1 3.8532 0.4369 1.3574 36 1 3.6402 -0.8759 3.4506 37 1 3.7865 -2.3853 2.5186 38 1 6.0345 -1.6853 1.7396 39 1 5.8876 -0.1762 2.6718 40 1 5.4607 -2.3502 4.4237 41 1 7.3651 -3.6547 6.8317 42 1 2.2490 -1.6318 -1.1525 43 1 4.6056 0.1344 -3.3114 44 1 4.4505 -1.5426 -2.7267 45 1 4.1503 -2.2733 -5.1384 46 1 5.7555 -1.5820 -4.7891 47 1 4.6315 -0.7016 -6.9101 48 1 5.1396 0.5442 -5.7458 49 1 0.9392 1.6085 -4.3824 50 1 0.5535 0.6465 -5.8294 51 1 0.2342 -0.0166 -4.2087 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176391604.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:09 Heat of formation + Delta-G solvation = -81.486705 kcal Electronic energy + Delta-G solvation = -28007.083769 eV Core-core repulsion = 24133.844263 eV Total energy + Delta-G solvation = -3873.239506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.36190 -39.74805 -37.33788 -36.47333 -35.35761 -34.38592 -33.35607 -31.93933 -30.60121 -29.82051 -27.51462 -27.44402 -25.61668 -24.24366 -22.71234 -22.41307 -21.36767 -20.88097 -20.70910 -19.06760 -17.91575 -17.18086 -17.01238 -16.83031 -16.25842 -15.70444 -15.32373 -15.05048 -14.74730 -14.66387 -14.51666 -14.04264 -13.91246 -13.85889 -13.57088 -13.20391 -13.07552 -13.00237 -12.79456 -12.48234 -12.44832 -12.35386 -11.99886 -11.83875 -11.54279 -11.51241 -11.42104 -11.33143 -11.05733 -10.84358 -10.76843 -10.47862 -10.45108 -10.35729 -10.02627 -9.93433 -9.70205 -9.38463 -8.99862 -8.88619 -6.93393 -5.78147 -3.06687 2.13428 2.24562 2.53147 2.90069 3.42063 3.47018 3.48740 4.05634 4.09407 4.14859 4.28981 4.42358 4.51671 4.61024 4.68433 4.80332 4.88709 4.90301 5.06576 5.17178 5.21228 5.23906 5.31710 5.36651 5.37442 5.40234 5.45342 5.49643 5.54949 5.61573 5.65478 5.70166 5.74853 5.81118 5.87953 5.94553 6.02410 6.12923 6.24385 6.27999 6.33889 6.41064 6.84853 6.88906 6.99999 7.14869 7.68158 7.78026 7.86531 8.41204 9.51984 10.10980 10.45345 11.44926 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.014672 B = 0.002237 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.940308 B =12516.155720 C =14126.425417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.089 0.911 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.153 3.847 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.717 5.717 18 C 0.505 3.495 19 O -0.525 6.525 20 C 0.128 3.872 21 H 0.098 0.902 22 C -0.130 4.130 23 C -0.122 4.122 24 C -0.136 4.136 25 C 0.520 3.480 26 O -0.552 6.552 27 N -0.588 5.588 28 C 0.081 3.919 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.402 0.598 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.103 0.897 48 H 0.102 0.898 49 H 0.072 0.928 50 H 0.076 0.924 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.643 2.402 -21.239 25.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.107 0.893 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.583 5.583 13 Si 0.738 3.262 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.208 1.208 17 N -0.369 5.369 18 C 0.289 3.711 19 O -0.400 6.400 20 C 0.020 3.980 21 H 0.115 0.885 22 C -0.168 4.168 23 C -0.159 4.159 24 C -0.176 4.176 25 C 0.308 3.692 26 O -0.431 6.431 27 N -0.321 5.321 28 C -0.061 4.061 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.236 0.764 43 H 0.101 0.899 44 H 0.114 0.886 45 H 0.093 0.907 46 H 0.105 0.895 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.090 0.910 50 H 0.095 0.905 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.899 3.603 -21.786 26.092 hybrid contribution 0.894 -0.713 0.751 1.368 sum -13.005 2.890 -21.035 24.899 Atomic orbital electron populations 1.22172 0.95258 1.02129 1.02556 1.21080 0.93787 0.97754 0.83671 0.89266 1.21947 0.96925 1.00967 0.96673 1.21518 0.93884 1.01109 0.98647 1.21732 0.97287 1.00263 0.97111 1.20639 0.90959 0.95298 0.90574 1.42391 1.05357 1.64890 1.25276 1.19242 0.83915 1.28340 1.05545 0.91240 1.24754 0.97749 1.00927 0.97729 1.69657 1.32811 1.40683 1.15189 0.86181 0.85048 0.77050 0.77879 1.21702 1.21743 1.20762 1.46103 1.67016 1.14211 1.09578 1.20696 0.78099 0.87644 0.84661 1.90734 1.49158 1.15591 1.84550 1.20975 0.97531 0.95400 0.84102 0.88473 1.21891 0.91231 1.04060 0.99598 1.21656 1.02994 0.98064 0.93201 1.21707 0.93267 1.00601 1.02037 1.20167 0.88048 0.79433 0.81514 1.90721 1.74100 1.42100 1.36135 1.46906 1.15857 1.53709 1.15610 1.21756 0.81910 0.99628 1.02844 0.92342 0.92422 0.91401 0.90124 0.91254 0.92157 0.91996 0.92054 0.92099 0.96663 0.96620 0.78348 0.93519 0.76354 0.89898 0.88577 0.90661 0.89526 0.87910 0.87974 0.90971 0.90535 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.48 37.16 0.35 -0.86 16 2 C 0.14 1.15 2.57 -67.93 -0.17 0.97 16 3 H 0.09 0.92 7.58 -51.93 -0.39 0.52 16 4 C -0.13 -1.06 4.75 -26.73 -0.13 -1.19 16 5 C -0.11 -1.23 5.10 -26.73 -0.14 -1.36 16 6 C -0.13 -1.86 5.33 -26.73 -0.14 -2.00 16 7 C 0.15 3.00 6.26 -4.04 -0.03 2.97 16 8 N -0.74 -18.68 5.60 -59.91 -0.34 -19.02 16 9 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 10 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 11 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 12 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 13 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 N -0.72 -5.01 4.53 -53.80 -0.24 -5.25 16 18 C 0.50 4.45 6.27 -10.99 -0.07 4.38 16 19 O -0.52 -6.67 14.02 5.56 0.08 -6.59 16 20 C 0.13 0.88 3.09 -69.53 -0.21 0.66 16 21 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 22 C -0.13 -0.73 5.27 -26.63 -0.14 -0.87 16 23 C -0.12 -0.57 6.04 -26.56 -0.16 -0.73 16 24 C -0.14 -0.93 6.02 -28.10 -0.17 -1.10 16 25 C 0.52 5.52 7.47 -11.87 -0.09 5.43 16 26 O -0.55 -8.03 16.18 5.56 0.09 -7.94 16 27 N -0.59 -5.57 2.96 -176.51 -0.52 -6.10 16 28 C 0.08 0.80 8.70 59.84 0.52 1.32 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.60 7.75 -51.93 -0.40 0.20 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.38 10.17 7.67 -40.82 -0.31 9.86 16 41 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.40 1.90 8.60 -40.82 -0.35 1.55 16 43 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 44 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.30 8.13 -51.93 -0.42 -0.12 16 46 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.07 0.85 6.96 -51.93 -0.36 0.49 16 50 H 0.08 0.80 7.13 -51.93 -0.37 0.43 16 51 H 0.06 0.50 7.75 -51.93 -0.40 0.10 16 LS Contribution 407.01 15.07 6.13 6.13 Total: -1.00 -35.79 407.01 -9.25 -45.03 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -9.32 Total: 3.76 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -0.82 Total: 0.20 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.38 Total: -57.89 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.17 Total: -14.53 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.79 -9.25 -45.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176391604.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.456 kcal (2) G-P(sol) polarization free energy of solvation -35.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds