Wall clock time and date at job start Fri Apr 10 2020 18:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.53006 * 109.47164 * 119.99948 * 2 1 3 5 5 C 1.52997 * 109.47021 * 185.00245 * 4 2 1 6 6 C 1.53006 * 109.47021 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47021 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.46793 * 180.02562 * 7 6 5 9 9 C 1.36930 * 119.99776 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00576 * 359.97438 * 9 8 7 11 11 C 1.38815 * 120.00134 * 180.02562 * 9 8 7 12 12 N 1.31613 * 119.99706 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00334 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47402 * 89.99394 * 13 11 9 15 15 H 1.48498 * 109.47031 * 209.99932 * 13 11 9 16 16 H 1.48496 * 109.46868 * 329.99548 * 13 11 9 17 17 N 1.46500 * 109.47204 * 239.99873 * 2 1 3 18 18 C 1.34775 * 120.00366 * 85.00218 * 17 2 1 19 19 O 1.21282 * 119.99750 * 359.97438 * 18 17 2 20 20 C 1.50699 * 120.00244 * 179.97438 * 18 17 2 21 21 H 1.09000 * 109.29786 * 39.99870 * 20 18 17 22 22 C 1.52918 * 109.29944 * 280.41179 * 20 18 17 23 23 C 1.53277 * 108.71184 * 188.73802 * 22 20 18 24 24 C 1.53062 * 108.24394 * 67.81964 * 23 22 20 25 25 C 1.50183 * 109.89436 * 311.03110 * 24 23 22 26 26 O 1.21280 * 118.24344 * 197.56190 * 25 24 23 27 27 N 1.33352 * 123.50340 * 17.58796 * 25 24 23 28 28 C 1.46496 * 117.94506 * 177.80320 * 27 25 24 29 29 H 1.09002 * 109.46777 * 60.00573 * 1 2 3 30 30 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47375 * 300.00017 * 1 2 3 32 32 H 1.09004 * 109.46579 * 304.99685 * 4 2 1 33 33 H 1.08992 * 109.47046 * 64.99868 * 4 2 1 34 34 H 1.09004 * 109.47446 * 299.99458 * 5 4 2 35 35 H 1.08992 * 109.47518 * 59.99913 * 5 4 2 36 36 H 1.09004 * 109.46568 * 299.99995 * 6 5 4 37 37 H 1.09000 * 109.46904 * 59.99308 * 6 5 4 38 38 H 1.08994 * 109.46931 * 299.99379 * 7 6 5 39 39 H 1.08992 * 109.47518 * 59.99913 * 7 6 5 40 40 H 0.97002 * 120.00077 * 359.97438 * 8 7 6 41 41 H 0.97000 * 120.00455 * 180.02562 * 12 11 9 42 42 H 0.97001 * 119.99882 * 265.00024 * 17 2 1 43 43 H 1.08997 * 109.61089 * 308.69588 * 22 20 18 44 44 H 1.09001 * 109.60183 * 69.18433 * 22 20 18 45 45 H 1.09004 * 109.81664 * 308.10916 * 23 22 20 46 46 H 1.09003 * 109.73321 * 187.48090 * 23 22 20 47 47 H 1.09003 * 109.40139 * 190.90473 * 24 23 22 48 48 H 1.09004 * 109.33329 * 71.12184 * 24 23 22 49 49 H 1.09000 * 109.46847 * 269.97509 * 28 27 25 50 50 H 1.09001 * 109.47374 * 29.96689 * 28 27 25 51 51 H 1.09000 * 109.47606 * 149.97759 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6132 1.3137 6 6 4.0749 -1.3350 2.5627 7 6 5.5996 -1.2265 2.6275 8 7 6.0880 -1.9181 3.8231 9 6 7.4299 -1.9537 4.0932 10 1 8.1284 -1.4723 3.4247 11 6 7.8928 -2.6095 5.2257 12 7 7.0418 -3.1967 6.0401 13 14 9.7236 -2.6588 5.5939 14 1 10.0930 -1.4854 6.4256 15 1 10.0473 -3.9080 6.3286 16 1 10.4858 -2.6221 4.3200 17 7 2.0183 -0.6906 -1.1961 18 6 2.1471 -0.0184 -2.3571 19 8 1.8583 1.1583 -2.4118 20 6 2.6500 -0.7287 -3.5874 21 1 2.2142 -1.7268 -3.6305 22 6 4.1732 -0.8448 -3.5168 23 6 4.6894 -1.3670 -4.8623 24 6 4.4533 -0.2849 -5.9187 25 6 3.0387 0.2124 -5.8337 26 8 2.5862 0.8204 -6.7805 27 7 2.2540 0.0217 -4.7725 28 6 0.9092 0.6021 -4.8000 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6054 -0.2616 2.1370 33 1 1.7516 -1.7714 1.2057 34 1 3.9995 -1.0728 0.4260 35 1 3.8532 0.4369 1.3574 36 1 3.6402 -0.8759 3.4506 37 1 3.7865 -2.3853 2.5186 38 1 6.0345 -1.6853 1.7396 39 1 5.8876 -0.1762 2.6718 40 1 5.4607 -2.3502 4.4237 41 1 7.3651 -3.6547 6.8317 42 1 2.2490 -1.6318 -1.1525 43 1 4.6056 0.1344 -3.3114 44 1 4.4505 -1.5426 -2.7267 45 1 4.1503 -2.2733 -5.1384 46 1 5.7555 -1.5820 -4.7891 47 1 4.6315 -0.7016 -6.9101 48 1 5.1396 0.5442 -5.7458 49 1 0.9392 1.6085 -4.3824 50 1 0.5535 0.6465 -5.8294 51 1 0.2342 -0.0166 -4.2087 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176391604.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:08 Heat of formation + Delta-G solvation = -106.139545 kcal Electronic energy + Delta-G solvation = -28008.152796 eV Core-core repulsion = 24133.844263 eV Total energy + Delta-G solvation = -3874.308534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.06315 -40.51093 -38.19789 -37.31762 -36.76326 -35.07593 -34.70551 -33.10774 -31.97143 -30.53065 -28.79309 -28.15496 -26.28945 -25.81561 -23.75008 -23.26333 -22.28903 -21.96412 -21.52933 -19.68224 -19.11068 -18.58488 -17.85040 -17.56498 -16.98954 -16.67806 -16.43873 -16.16931 -15.94838 -15.39695 -15.32484 -15.23018 -15.13668 -14.66282 -14.48418 -14.40267 -14.12296 -14.05525 -13.58583 -13.30043 -13.13728 -12.99759 -12.98912 -12.87249 -12.81818 -12.60071 -12.42399 -12.25091 -12.13719 -11.99686 -11.86282 -11.85525 -11.77599 -11.46319 -11.36753 -11.24217 -10.92211 -10.68972 -10.08827 -9.76741 -8.99564 -7.95384 -5.24210 1.44303 1.47951 1.49319 1.49744 1.58190 1.85393 2.24963 2.56481 3.38273 3.45883 3.55281 3.62912 3.69159 3.84071 4.01633 4.07757 4.09464 4.16954 4.21632 4.29272 4.38239 4.44781 4.52207 4.56967 4.63497 4.67879 4.76363 4.79312 4.83019 4.89501 4.91290 4.95137 4.96916 5.02111 5.04301 5.06029 5.15300 5.24050 5.28961 5.30252 5.34796 5.47576 5.48232 5.56899 5.60721 6.27814 6.29185 6.55059 7.02655 7.22623 7.33536 8.11145 8.33527 9.28270 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.014672 B = 0.002237 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.940308 B =12516.155720 C =14126.425417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.146 3.854 3 H 0.065 0.935 4 C -0.117 4.117 5 C -0.104 4.104 6 C -0.113 4.113 7 C 0.148 3.852 8 N -0.750 5.750 9 C -0.247 4.247 10 H 0.074 0.926 11 C -0.077 4.077 12 N -0.970 5.970 13 Si 0.974 3.026 14 H -0.288 1.288 15 H -0.294 1.294 16 H -0.268 1.268 17 N -0.703 5.703 18 C 0.504 3.496 19 O -0.570 6.570 20 C 0.127 3.873 21 H 0.133 0.867 22 C -0.129 4.129 23 C -0.113 4.113 24 C -0.133 4.133 25 C 0.510 3.490 26 O -0.603 6.603 27 N -0.589 5.589 28 C 0.086 3.914 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.023 0.977 39 H 0.010 0.990 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.417 0.583 43 H 0.063 0.937 44 H 0.120 0.880 45 H 0.090 0.910 46 H 0.104 0.896 47 H 0.112 0.888 48 H 0.104 0.896 49 H 0.048 0.952 50 H 0.065 0.935 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.054 0.693 -21.615 25.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.042 3.958 3 H 0.083 0.917 4 C -0.155 4.155 5 C -0.142 4.142 6 C -0.151 4.151 7 C 0.022 3.978 8 N -0.393 5.393 9 C -0.379 4.379 10 H 0.092 0.908 11 C -0.270 4.270 12 N -0.621 5.621 13 Si 0.803 3.197 14 H -0.215 1.215 15 H -0.220 1.220 16 H -0.193 1.193 17 N -0.356 5.356 18 C 0.289 3.711 19 O -0.449 6.449 20 C 0.020 3.980 21 H 0.151 0.849 22 C -0.167 4.167 23 C -0.150 4.150 24 C -0.173 4.173 25 C 0.300 3.700 26 O -0.485 6.485 27 N -0.320 5.320 28 C -0.057 4.057 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.041 0.959 39 H 0.028 0.972 40 H 0.205 0.795 41 H 0.061 0.939 42 H 0.255 0.745 43 H 0.082 0.918 44 H 0.138 0.862 45 H 0.109 0.891 46 H 0.123 0.877 47 H 0.130 0.870 48 H 0.122 0.878 49 H 0.066 0.934 50 H 0.084 0.916 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.303 1.869 -22.163 25.916 hybrid contribution 0.673 -0.128 0.871 1.108 sum -12.631 1.741 -21.292 24.818 Atomic orbital electron populations 1.22112 0.94484 1.02923 1.02049 1.20927 0.94290 0.96643 0.83966 0.91670 1.21841 0.94822 1.02101 0.96687 1.21426 0.95678 1.00013 0.97102 1.21610 0.93709 1.01041 0.98752 1.20868 0.94270 0.94130 0.88542 1.42653 1.04497 1.65298 1.26815 1.19651 0.85388 1.27455 1.05427 0.90785 1.25596 1.02144 1.01297 0.97923 1.69808 1.34678 1.41915 1.15659 0.85134 0.80015 0.76631 0.77962 1.21521 1.22002 1.19281 1.45986 1.66103 1.14824 1.08711 1.21058 0.77373 0.87124 0.85501 1.90733 1.51229 1.17664 1.85248 1.21270 0.98783 0.96026 0.81921 0.84918 1.21949 0.89873 1.03787 1.01051 1.21663 1.04307 0.97508 0.91537 1.21756 0.90427 1.01491 1.03594 1.20942 0.89344 0.78687 0.80991 1.90690 1.75311 1.44448 1.38030 1.47050 1.15437 1.53305 1.16229 1.21622 0.82930 0.98920 1.02222 0.93880 0.90895 0.90960 0.90027 0.89426 0.90768 0.92958 0.92887 0.91651 0.95940 0.97171 0.79461 0.93946 0.74528 0.91797 0.86159 0.89120 0.87722 0.86993 0.87766 0.93381 0.91599 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.48 71.98 0.68 -1.39 16 2 C 0.15 2.11 2.57 44.99 0.12 2.23 16 3 H 0.07 1.30 7.58 -2.39 -0.02 1.29 16 4 C -0.12 -1.62 4.75 30.60 0.15 -1.48 16 5 C -0.10 -2.00 5.10 30.60 0.16 -1.85 16 6 C -0.11 -3.14 5.33 30.60 0.16 -2.97 16 7 C 0.15 5.63 6.26 86.38 0.54 6.17 16 8 N -0.75 -37.82 5.60 -343.46 -1.92 -39.74 16 9 C -0.25 -13.78 9.99 84.04 0.84 -12.94 16 10 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 11 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 12 N -0.97 -58.89 13.06 21.65 0.28 -58.61 16 13 Si 0.97 45.55 29.55 68.60 2.03 47.58 16 14 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 15 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 17 N -0.70 -8.04 4.53 -442.53 -2.00 -10.04 16 18 C 0.50 8.15 6.27 87.66 0.55 8.70 16 19 O -0.57 -14.62 14.02 -3.04 -0.04 -14.66 16 20 C 0.13 1.45 3.09 44.36 0.14 1.59 16 21 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 22 C -0.13 -1.08 5.27 30.66 0.16 -0.92 16 23 C -0.11 -0.70 6.04 30.71 0.19 -0.52 16 24 C -0.13 -1.63 6.02 29.71 0.18 -1.45 16 25 C 0.51 10.80 7.47 87.72 0.66 11.45 16 26 O -0.60 -18.27 16.18 -3.03 -0.05 -18.32 16 27 N -0.59 -10.83 2.96 -831.53 -2.46 -13.30 16 28 C 0.09 1.75 8.70 127.77 1.11 2.87 16 29 H 0.04 0.71 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 1.23 7.75 -2.38 -0.02 1.22 16 35 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.01 0.40 8.14 -2.39 -0.02 0.39 16 40 H 0.37 19.91 7.67 -92.71 -0.71 19.20 16 41 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 42 H 0.42 2.28 8.60 -92.71 -0.80 1.48 16 43 H 0.06 0.81 8.10 -2.39 -0.02 0.79 16 44 H 0.12 0.46 8.14 -2.39 -0.02 0.45 16 45 H 0.09 0.34 8.13 -2.38 -0.02 0.32 16 46 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 47 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 49 H 0.05 1.21 6.96 -2.39 -0.02 1.20 16 50 H 0.07 1.46 7.13 -2.39 -0.02 1.44 16 51 H 0.08 1.27 7.75 -2.39 -0.02 1.25 16 Total: -1.00 -79.70 407.01 1.32 -78.38 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: -0.60 Total: 23.18 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 6.09 Total: 5.53 kcal Atomic # 7 Polarization: -115.58 SS G_CDS: -6.11 Total: -121.69 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -0.09 Total: -32.98 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -79.70 1.32 -78.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176391604.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.758 kcal (2) G-P(sol) polarization free energy of solvation -79.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds