Wall clock time and date at job start Fri Apr 10 2020 18:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47298 * 2 1 4 4 C 1.50704 * 109.47301 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00050 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00199 * 179.97438 * 4 3 2 7 7 C 1.46926 * 120.62797 * 6.09154 * 6 4 3 8 8 C 1.53194 * 108.77568 * 233.60569 * 7 6 4 9 9 C 1.53038 * 109.31255 * 305.36760 * 8 7 6 10 10 C 1.53043 * 109.54028 * 61.36081 * 9 8 7 11 11 C 1.46922 * 120.63617 * 186.08643 * 6 4 3 12 12 H 1.08999 * 109.58976 * 246.18533 * 11 6 4 13 13 C 1.50713 * 109.69801 * 6.53746 * 11 6 4 14 14 O 1.21281 * 120.00025 * 61.30476 * 13 11 6 15 15 N 1.34776 * 119.99604 * 241.30179 * 13 11 6 16 16 C 1.46494 * 119.99674 * 180.02562 * 15 13 11 17 17 C 1.52998 * 109.47282 * 179.97438 * 16 15 13 18 18 C 1.53007 * 109.47510 * 179.97438 * 17 16 15 19 19 N 1.46495 * 109.47154 * 179.97438 * 18 17 16 20 20 C 1.36940 * 119.99916 * 180.02562 * 19 18 17 21 21 H 1.07996 * 119.99916 * 0.02562 * 20 19 18 22 22 C 1.38810 * 120.00020 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00026 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99906 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47448 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46709 * 120.00509 * 24 22 20 27 27 H 1.48500 * 109.47163 * 240.00056 * 24 22 20 28 28 H 1.08994 * 109.47623 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47508 * 300.00319 * 1 2 3 30 30 H 1.09010 * 109.47043 * 60.00071 * 1 2 3 31 31 H 1.09004 * 109.47217 * 239.99777 * 2 1 3 32 32 H 1.09004 * 109.47382 * 119.99650 * 2 1 3 33 33 H 1.08996 * 109.47101 * 59.99432 * 3 2 1 34 34 H 1.09005 * 109.47012 * 299.99452 * 3 2 1 35 35 H 1.08999 * 109.58686 * 113.81951 * 7 6 4 36 36 H 1.09003 * 109.70785 * 353.46171 * 7 6 4 37 37 H 1.08998 * 109.49995 * 185.41061 * 8 7 6 38 38 H 1.08999 * 109.52072 * 65.33101 * 8 7 6 39 39 H 1.09003 * 109.45850 * 301.34045 * 9 8 7 40 40 H 1.08999 * 109.46335 * 181.38456 * 9 8 7 41 41 H 1.08998 * 109.49868 * 178.68295 * 10 9 8 42 42 H 1.09005 * 109.52197 * 58.60273 * 10 9 8 43 43 H 0.97000 * 120.00130 * 359.97438 * 15 13 11 44 44 H 1.09001 * 109.47181 * 299.99667 * 16 15 13 45 45 H 1.08996 * 109.47630 * 59.99446 * 16 15 13 46 46 H 1.09005 * 109.47173 * 299.99606 * 17 16 15 47 47 H 1.09002 * 109.47141 * 59.99761 * 17 16 15 48 48 H 1.09005 * 109.46839 * 300.00126 * 18 17 16 49 49 H 1.09002 * 109.46856 * 59.99903 * 18 17 16 50 50 H 0.96995 * 120.00439 * 0.02562 * 19 18 17 51 51 H 0.97006 * 119.99773 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3922 0.0015 6 7 4.2209 2.6096 0.0002 7 6 3.5064 3.8866 0.1333 8 6 3.9077 4.7996 -1.0295 9 6 5.4318 4.9329 -1.0656 10 6 6.0608 3.5564 -1.2930 11 6 5.6839 2.6294 -0.1332 12 1 6.1301 2.9991 0.7900 13 6 6.1871 1.2370 -0.4153 14 8 5.8319 0.6555 -1.4186 15 7 7.0319 0.6382 0.4474 16 6 7.5215 -0.7149 0.1729 17 6 8.4581 -1.1567 1.2991 18 6 8.9690 -2.5702 1.0128 19 7 9.8663 -2.9929 2.0909 20 6 10.4493 -4.2313 2.0506 21 1 10.2478 -4.8963 1.2238 22 6 11.2999 -4.6316 3.0718 23 7 11.5458 -3.8210 4.0793 24 14 12.0945 -6.3213 3.0171 25 1 11.6588 -7.0338 1.7893 26 1 13.5721 -6.1731 3.0050 27 1 11.6850 -7.0998 4.2135 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 3.7751 4.3588 1.0782 36 1 2.4310 3.7107 0.1055 37 1 3.4596 5.7835 -0.8909 38 1 3.5578 4.3694 -1.9679 39 1 5.7833 5.3406 -0.1178 40 1 5.7188 5.6018 -1.8770 41 1 7.1452 3.6555 -1.3420 42 1 5.6912 3.1371 -2.2289 43 1 7.3163 1.1035 1.2496 44 1 6.6770 -1.4015 0.1119 45 1 8.0632 -0.7205 -0.7729 46 1 9.3026 -0.4701 1.3597 47 1 7.9167 -1.1511 2.2452 48 1 8.1243 -3.2565 0.9525 49 1 9.5103 -2.5762 0.0667 50 1 10.0475 -2.3956 2.8333 51 1 12.1400 -4.1009 4.7931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176831085.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:16 Heat of formation + Delta-G solvation = -75.240712 kcal Electronic energy + Delta-G solvation = -28307.683557 eV Core-core repulsion = 24434.714897 eV Total energy + Delta-G solvation = -3872.968660 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.13960 -38.72316 -37.72390 -35.83349 -34.63950 -34.15098 -33.26052 -32.18895 -31.54311 -29.40572 -28.40961 -26.13963 -25.05411 -23.99154 -22.68553 -22.20556 -21.06404 -20.96188 -20.39377 -19.12133 -17.71584 -16.97342 -16.64264 -16.47478 -15.98447 -15.54590 -15.28164 -14.95185 -14.76789 -14.43641 -14.36870 -14.18380 -14.05172 -13.67832 -13.34598 -13.21941 -13.16629 -13.02580 -12.77982 -12.35180 -12.11274 -11.97799 -11.90003 -11.59848 -11.50145 -11.40723 -11.28899 -11.10924 -10.98637 -10.86772 -10.84217 -10.70493 -10.51443 -10.00265 -9.71666 -9.67482 -9.47719 -8.99540 -8.83460 -8.70997 -6.87685 -5.72710 -3.01049 2.31950 2.48401 3.18943 3.27959 3.46831 3.52417 3.55002 4.18844 4.27560 4.41564 4.48405 4.58745 4.59237 4.63850 4.72417 4.76648 4.82117 4.96372 5.04999 5.12946 5.18700 5.27239 5.29074 5.31467 5.39020 5.39968 5.47279 5.48944 5.58913 5.62642 5.63704 5.78648 5.79092 5.89967 5.90909 6.05587 6.13498 6.17822 6.25693 6.30092 6.43616 6.72435 6.89202 6.93684 7.06160 7.71030 7.75585 7.98426 8.46575 8.53482 9.57557 10.15592 10.50559 11.50575 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.015654 B = 0.002276 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.303637 B =12296.637644 C =13549.126911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.133 4.133 4 C 0.504 3.496 5 O -0.495 6.495 6 N -0.609 5.609 7 C 0.110 3.890 8 C -0.138 4.138 9 C -0.118 4.118 10 C -0.123 4.123 11 C 0.129 3.871 12 H 0.084 0.916 13 C 0.533 3.467 14 O -0.528 6.528 15 N -0.725 5.725 16 C 0.131 3.869 17 C -0.136 4.136 18 C 0.157 3.843 19 N -0.734 5.734 20 C -0.236 4.236 21 H 0.072 0.928 22 C -0.017 4.017 23 N -0.935 5.935 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.394 0.606 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.022 0.978 49 H 0.021 0.979 50 H 0.383 0.617 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.134 24.055 -8.782 33.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.173 4.173 4 C 0.293 3.707 5 O -0.368 6.368 6 N -0.347 5.347 7 C -0.013 4.013 8 C -0.176 4.176 9 C -0.155 4.155 10 C -0.161 4.161 11 C 0.022 3.978 12 H 0.102 0.898 13 C 0.318 3.682 14 O -0.404 6.404 15 N -0.377 5.377 16 C 0.007 3.993 17 C -0.174 4.174 18 C 0.029 3.971 19 N -0.378 5.378 20 C -0.367 4.367 21 H 0.090 0.910 22 C -0.213 4.213 23 N -0.585 5.585 24 Si 0.739 3.261 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.228 0.772 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.040 0.960 49 H 0.039 0.961 50 H 0.217 0.783 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -22.032 22.833 -9.585 33.145 hybrid contribution 0.706 -0.299 0.780 1.094 sum -21.326 22.533 -8.805 32.250 Atomic orbital electron populations 1.21780 0.95479 1.02076 1.01531 1.21304 0.95189 0.94542 1.03921 1.21700 0.91400 1.00339 1.03842 1.20898 0.90586 0.83180 0.76071 1.90816 1.68385 1.30607 1.46947 1.48019 1.05344 1.06621 1.74676 1.21768 0.97157 0.83554 0.98789 1.21952 0.96713 0.99815 0.99138 1.21509 0.95010 0.96492 1.02533 1.21831 1.01437 0.94629 0.98233 1.21144 0.81692 0.95097 0.99893 0.89761 1.19667 0.78176 0.86456 0.83862 1.90677 1.56484 1.64755 1.28464 1.45860 1.48754 1.17747 1.25317 1.21232 0.97461 0.82212 0.98364 1.21931 0.98567 0.98968 0.97964 1.20520 0.93034 0.91243 0.92347 1.42358 1.53918 1.17375 1.24170 1.19311 1.20315 0.92167 1.04954 0.91049 1.24754 1.00763 0.98510 0.97234 1.69679 1.41039 1.35955 1.11785 0.86091 0.78920 0.83842 0.77224 1.20512 1.21883 1.21871 0.92304 0.92782 0.92801 0.91024 0.91137 0.89162 0.89085 0.91034 0.89302 0.90436 0.91188 0.91464 0.91071 0.90277 0.90204 0.77237 0.91335 0.91897 0.91526 0.91495 0.96038 0.96098 0.78341 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.15 0.37 -0.65 16 2 C -0.11 -1.03 5.22 -26.74 -0.14 -1.17 16 3 C -0.13 -1.04 4.06 -27.88 -0.11 -1.16 16 4 C 0.50 5.94 7.39 -10.98 -0.08 5.86 16 5 O -0.49 -8.19 11.75 -19.11 -0.22 -8.42 16 6 N -0.61 -5.63 2.97 -166.53 -0.49 -6.13 16 7 C 0.11 0.56 6.34 -3.71 -0.02 0.53 16 8 C -0.14 -0.62 6.08 -26.61 -0.16 -0.78 16 9 C -0.12 -0.62 5.88 -26.69 -0.16 -0.78 16 10 C -0.12 -1.02 5.31 -26.61 -0.14 -1.16 16 11 C 0.13 1.29 3.31 -68.75 -0.23 1.06 16 12 H 0.08 0.67 7.92 -51.93 -0.41 0.26 16 13 C 0.53 7.75 4.39 -10.98 -0.05 7.70 16 14 O -0.53 -9.90 14.61 -19.11 -0.28 -10.18 16 15 N -0.72 -10.06 5.56 -60.30 -0.33 -10.39 16 16 C 0.13 2.11 5.67 -4.05 -0.02 2.09 16 17 C -0.14 -2.32 5.44 -26.73 -0.15 -2.47 16 18 C 0.16 3.37 6.26 -4.04 -0.03 3.35 16 19 N -0.73 -19.56 5.60 -59.91 -0.34 -19.89 16 20 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 21 H 0.07 2.04 7.83 -52.49 -0.41 1.62 16 22 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 23 N -0.94 -29.04 13.06 55.49 0.72 -28.32 16 24 Si 0.91 23.07 29.55 -169.99 -5.02 18.05 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.31 8.14 -51.92 -0.42 -0.11 16 31 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 32 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.09 0.50 7.69 -51.93 -0.40 0.10 16 34 H 0.09 0.56 7.94 -51.93 -0.41 0.15 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.09 0.30 5.94 -51.93 -0.31 -0.01 16 37 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.83 7.94 -51.93 -0.41 0.42 16 43 H 0.39 4.42 8.32 -40.82 -0.34 4.08 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 47 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 48 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.38 10.56 7.67 -40.82 -0.31 10.25 16 51 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 403.08 15.07 6.07 6.07 Total: -1.00 -37.47 403.08 -10.38 -47.85 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -9.32 Total: 6.59 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -1.17 Total: 4.76 kcal Atomic # 7 Polarization: -64.29 SS G_CDS: -0.44 Total: -64.73 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.50 Total: -18.60 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -37.47 -10.38 -47.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176831085.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.388 kcal (2) G-P(sol) polarization free energy of solvation -37.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds