Wall clock time and date at job start Fri Apr 10 2020 18:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47298 * 2 1 4 4 C 1.50704 * 109.47301 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00050 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00199 * 179.97438 * 4 3 2 7 7 C 1.46926 * 120.62797 * 6.09154 * 6 4 3 8 8 C 1.53194 * 108.77568 * 233.60569 * 7 6 4 9 9 C 1.53038 * 109.31255 * 305.36760 * 8 7 6 10 10 C 1.53043 * 109.54028 * 61.36081 * 9 8 7 11 11 C 1.46922 * 120.63617 * 186.08643 * 6 4 3 12 12 H 1.08999 * 109.58976 * 246.18533 * 11 6 4 13 13 C 1.50713 * 109.69801 * 6.53746 * 11 6 4 14 14 O 1.21281 * 120.00025 * 61.30476 * 13 11 6 15 15 N 1.34776 * 119.99604 * 241.30179 * 13 11 6 16 16 C 1.46494 * 119.99674 * 180.02562 * 15 13 11 17 17 C 1.52998 * 109.47282 * 179.97438 * 16 15 13 18 18 C 1.53007 * 109.47510 * 179.97438 * 17 16 15 19 19 N 1.46495 * 109.47154 * 179.97438 * 18 17 16 20 20 C 1.36940 * 119.99916 * 180.02562 * 19 18 17 21 21 H 1.07996 * 119.99916 * 0.02562 * 20 19 18 22 22 C 1.38810 * 120.00020 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00026 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99906 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47448 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46709 * 120.00509 * 24 22 20 27 27 H 1.48500 * 109.47163 * 240.00056 * 24 22 20 28 28 H 1.08994 * 109.47623 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47508 * 300.00319 * 1 2 3 30 30 H 1.09010 * 109.47043 * 60.00071 * 1 2 3 31 31 H 1.09004 * 109.47217 * 239.99777 * 2 1 3 32 32 H 1.09004 * 109.47382 * 119.99650 * 2 1 3 33 33 H 1.08996 * 109.47101 * 59.99432 * 3 2 1 34 34 H 1.09005 * 109.47012 * 299.99452 * 3 2 1 35 35 H 1.08999 * 109.58686 * 113.81951 * 7 6 4 36 36 H 1.09003 * 109.70785 * 353.46171 * 7 6 4 37 37 H 1.08998 * 109.49995 * 185.41061 * 8 7 6 38 38 H 1.08999 * 109.52072 * 65.33101 * 8 7 6 39 39 H 1.09003 * 109.45850 * 301.34045 * 9 8 7 40 40 H 1.08999 * 109.46335 * 181.38456 * 9 8 7 41 41 H 1.08998 * 109.49868 * 178.68295 * 10 9 8 42 42 H 1.09005 * 109.52197 * 58.60273 * 10 9 8 43 43 H 0.97000 * 120.00130 * 359.97438 * 15 13 11 44 44 H 1.09001 * 109.47181 * 299.99667 * 16 15 13 45 45 H 1.08996 * 109.47630 * 59.99446 * 16 15 13 46 46 H 1.09005 * 109.47173 * 299.99606 * 17 16 15 47 47 H 1.09002 * 109.47141 * 59.99761 * 17 16 15 48 48 H 1.09005 * 109.46839 * 300.00126 * 18 17 16 49 49 H 1.09002 * 109.46856 * 59.99903 * 18 17 16 50 50 H 0.96995 * 120.00439 * 0.02562 * 19 18 17 51 51 H 0.97006 * 119.99773 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3922 0.0015 6 7 4.2209 2.6096 0.0002 7 6 3.5064 3.8866 0.1333 8 6 3.9077 4.7996 -1.0295 9 6 5.4318 4.9329 -1.0656 10 6 6.0608 3.5564 -1.2930 11 6 5.6839 2.6294 -0.1332 12 1 6.1301 2.9991 0.7900 13 6 6.1871 1.2370 -0.4153 14 8 5.8319 0.6555 -1.4186 15 7 7.0319 0.6382 0.4474 16 6 7.5215 -0.7149 0.1729 17 6 8.4581 -1.1567 1.2991 18 6 8.9690 -2.5702 1.0128 19 7 9.8663 -2.9929 2.0909 20 6 10.4493 -4.2313 2.0506 21 1 10.2478 -4.8963 1.2238 22 6 11.2999 -4.6316 3.0718 23 7 11.5458 -3.8210 4.0793 24 14 12.0945 -6.3213 3.0171 25 1 11.6588 -7.0338 1.7893 26 1 13.5721 -6.1731 3.0050 27 1 11.6850 -7.0998 4.2135 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 3.7751 4.3588 1.0782 36 1 2.4310 3.7107 0.1055 37 1 3.4596 5.7835 -0.8909 38 1 3.5578 4.3694 -1.9679 39 1 5.7833 5.3406 -0.1178 40 1 5.7188 5.6018 -1.8770 41 1 7.1452 3.6555 -1.3420 42 1 5.6912 3.1371 -2.2289 43 1 7.3163 1.1035 1.2496 44 1 6.6770 -1.4015 0.1119 45 1 8.0632 -0.7205 -0.7729 46 1 9.3026 -0.4701 1.3597 47 1 7.9167 -1.1511 2.2452 48 1 8.1243 -3.2565 0.9525 49 1 9.5103 -2.5762 0.0667 50 1 10.0475 -2.3956 2.8333 51 1 12.1400 -4.1009 4.7931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176831085.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:15 Heat of formation + Delta-G solvation = -100.956751 kcal Electronic energy + Delta-G solvation = -28308.798688 eV Core-core repulsion = 24434.714897 eV Total energy + Delta-G solvation = -3874.083791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.00302 -39.80989 -38.44720 -37.47496 -35.86008 -35.35345 -33.89701 -33.79872 -32.57040 -31.11440 -29.03744 -27.37294 -26.21450 -24.97670 -24.08662 -23.11527 -22.61481 -21.56496 -21.46882 -19.91721 -19.22062 -18.50668 -17.56589 -17.38781 -16.91083 -16.74002 -16.62272 -16.30220 -15.56475 -15.46969 -15.34698 -15.25319 -15.05441 -14.89843 -14.74937 -14.47387 -14.07007 -13.89807 -13.79125 -13.42978 -13.32005 -12.87911 -12.81791 -12.67279 -12.60956 -12.53079 -12.43326 -12.16041 -12.08538 -12.06964 -11.98820 -11.81549 -11.73179 -11.68149 -11.57873 -10.99199 -10.71308 -10.55519 -10.03418 -9.65522 -9.06051 -7.99429 -5.29307 1.45470 1.46801 1.48368 1.57395 1.65418 2.18533 2.25976 2.54073 3.34029 3.48656 3.73117 3.76445 3.82021 3.85868 3.95554 4.03751 4.06277 4.07070 4.11515 4.22641 4.24906 4.43405 4.45435 4.56318 4.64020 4.67255 4.67309 4.69620 4.72487 4.82465 4.83478 4.85819 4.89088 5.05841 5.13730 5.20272 5.22191 5.23088 5.23529 5.26278 5.40949 5.44757 5.45455 5.49828 5.52291 6.23250 6.34822 6.62193 7.16193 7.29397 7.45353 8.02307 8.28174 9.24402 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.015654 B = 0.002276 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.303637 B =12296.637644 C =13549.126911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C -0.124 4.124 4 C 0.489 3.511 5 O -0.555 6.555 6 N -0.606 5.606 7 C 0.102 3.898 8 C -0.135 4.135 9 C -0.113 4.113 10 C -0.119 4.119 11 C 0.129 3.871 12 H 0.113 0.887 13 C 0.527 3.473 14 O -0.577 6.577 15 N -0.720 5.720 16 C 0.146 3.854 17 C -0.114 4.114 18 C 0.154 3.846 19 N -0.746 5.746 20 C -0.251 4.251 21 H 0.073 0.927 22 C -0.075 4.075 23 N -0.968 5.968 24 Si 0.977 3.023 25 H -0.268 1.268 26 H -0.289 1.289 27 H -0.290 1.290 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.046 0.954 33 H 0.124 0.876 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.049 0.951 43 H 0.409 0.591 44 H 0.042 0.958 45 H 0.056 0.944 46 H 0.078 0.922 47 H 0.068 0.932 48 H 0.015 0.985 49 H 0.023 0.977 50 H 0.376 0.624 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.390 26.684 -8.320 36.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C -0.163 4.163 4 C 0.279 3.721 5 O -0.433 6.433 6 N -0.342 5.342 7 C -0.018 4.018 8 C -0.173 4.173 9 C -0.151 4.151 10 C -0.158 4.158 11 C 0.022 3.978 12 H 0.130 0.870 13 C 0.315 3.685 14 O -0.456 6.456 15 N -0.373 5.373 16 C 0.021 3.979 17 C -0.152 4.152 18 C 0.027 3.973 19 N -0.389 5.389 20 C -0.383 4.383 21 H 0.091 0.909 22 C -0.268 4.268 23 N -0.619 5.619 24 Si 0.806 3.194 25 H -0.193 1.193 26 H -0.216 1.216 27 H -0.217 1.217 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.142 0.858 34 H 0.131 0.869 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.068 0.932 43 H 0.245 0.755 44 H 0.061 0.939 45 H 0.075 0.925 46 H 0.097 0.903 47 H 0.087 0.913 48 H 0.033 0.967 49 H 0.041 0.959 50 H 0.208 0.792 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -23.317 25.537 -9.129 35.766 hybrid contribution 1.068 -1.082 0.588 1.630 sum -22.249 24.456 -8.540 34.148 Atomic orbital electron populations 1.21731 0.93100 1.02275 1.03022 1.21252 0.97146 0.95336 1.01229 1.21729 0.88566 0.99627 1.06363 1.21685 0.92248 0.82999 0.75134 1.90788 1.69658 1.32851 1.49972 1.48212 1.05023 1.07643 1.73310 1.22165 0.98051 0.81558 1.00075 1.21961 0.96126 1.01001 0.98215 1.21525 0.95469 0.94265 1.03811 1.21826 1.01914 0.95996 0.96035 1.21216 0.82647 0.92086 1.01817 0.86962 1.20513 0.77146 0.87994 0.82845 1.90642 1.57921 1.66466 1.30594 1.45764 1.48723 1.16779 1.26001 1.20857 0.96094 0.83294 0.97661 1.21671 0.98904 0.96493 0.98137 1.20636 0.91984 0.93615 0.91045 1.42531 1.54541 1.16738 1.25061 1.19681 1.20369 0.93200 1.05008 0.90872 1.25623 1.01647 1.02473 0.97011 1.69823 1.41813 1.37827 1.12438 0.85019 0.77689 0.79227 0.77483 1.19268 1.21571 1.21695 0.92873 0.90998 0.91459 0.94271 0.93466 0.85816 0.86865 0.88813 0.87157 0.87538 0.92599 0.89672 0.90193 0.89924 0.93164 0.75513 0.93939 0.92532 0.90293 0.91332 0.96669 0.95939 0.79176 0.93786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.11 -2.12 5.22 30.59 0.16 -1.96 16 3 C -0.12 -1.75 4.06 29.85 0.12 -1.63 16 4 C 0.49 11.45 7.39 87.66 0.65 12.10 16 5 O -0.55 -19.46 11.75 20.55 0.24 -19.21 16 6 N -0.61 -10.24 2.97 -799.17 -2.38 -12.62 16 7 C 0.10 0.65 6.34 86.36 0.55 1.20 16 8 C -0.14 -0.74 6.08 30.67 0.19 -0.55 16 9 C -0.11 -0.85 5.88 30.62 0.18 -0.67 16 10 C -0.12 -1.85 5.31 30.67 0.16 -1.68 16 11 C 0.13 2.46 3.31 44.23 0.15 2.60 16 12 H 0.11 1.50 7.92 -2.39 -0.02 1.48 16 13 C 0.53 15.77 4.39 87.66 0.38 16.16 16 14 O -0.58 -23.00 14.61 20.55 0.30 -22.70 16 15 N -0.72 -20.31 5.56 -463.07 -2.57 -22.88 16 16 C 0.15 4.89 5.67 86.38 0.49 5.38 16 17 C -0.11 -3.93 5.44 30.60 0.17 -3.76 16 18 C 0.15 6.77 6.26 86.38 0.54 7.31 16 19 N -0.75 -40.28 5.60 -343.45 -1.92 -42.21 16 20 C -0.25 -14.79 9.99 84.03 0.84 -13.95 16 21 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 22 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 23 N -0.97 -60.59 13.06 21.65 0.28 -60.31 16 24 Si 0.98 47.57 29.55 68.60 2.03 49.60 16 25 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 27 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.04 0.97 8.10 -2.38 -0.02 0.95 16 32 H 0.05 1.09 8.10 -2.38 -0.02 1.07 16 33 H 0.12 0.93 7.69 -2.39 -0.02 0.91 16 34 H 0.11 1.12 7.94 -2.38 -0.02 1.10 16 35 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.11 0.25 5.94 -2.39 -0.01 0.24 16 37 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.05 1.08 7.94 -2.38 -0.02 1.06 16 43 H 0.41 8.89 8.32 -92.71 -0.77 8.12 16 44 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 47 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 48 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 49 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.38 21.05 7.67 -92.71 -0.71 20.34 16 51 H 0.25 15.19 8.31 -92.70 -0.77 14.42 16 Total: -1.00 -85.45 403.08 1.16 -84.29 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: -0.57 Total: 30.55 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: 5.75 Total: 15.49 kcal Atomic # 7 Polarization: -131.43 SS G_CDS: -6.59 Total: -138.02 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: 0.54 Total: -41.91 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -85.45 1.16 -84.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176831085.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.670 kcal (2) G-P(sol) polarization free energy of solvation -85.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds