Wall clock time and date at job start Fri Apr 10 2020 18:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21274 * 119.99988 * 2 1 4 4 N 1.34778 * 119.99741 * 179.97438 * 2 1 3 5 5 C 1.46498 * 120.00064 * 180.02562 * 4 2 1 6 6 C 1.52994 * 109.47313 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47367 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.47184 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.46813 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.46624 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00521 * 359.73045 * 10 9 8 12 12 N 1.34784 * 119.99774 * 180.02562 * 10 9 8 13 13 C 1.47426 * 125.64631 * 359.75325 * 12 10 9 14 14 C 1.54906 * 104.82959 * 204.09278 * 13 12 10 15 15 C 1.55155 * 101.58202 * 322.98796 * 14 13 12 16 16 H 1.08998 * 110.72241 * 276.96555 * 15 14 13 17 17 N 1.46503 * 110.71980 * 153.86751 * 15 14 13 18 18 C 1.36941 * 120.00297 * 86.45509 * 17 15 14 19 19 H 1.08004 * 119.99604 * 0.02562 * 18 17 15 20 20 C 1.38803 * 120.00076 * 180.02562 * 18 17 15 21 21 N 1.31618 * 120.00518 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99936 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47010 * 89.99611 * 22 20 18 24 24 H 1.48497 * 109.47242 * 209.99798 * 22 20 18 25 25 H 1.48503 * 109.46755 * 330.00108 * 22 20 18 26 26 C 1.47018 * 125.64699 * 179.44586 * 12 10 9 27 27 H 1.09004 * 109.88164 * 298.39212 * 26 12 10 28 28 C 1.52996 * 109.88443 * 59.56251 * 26 12 10 29 29 H 1.09001 * 109.47391 * 240.00392 * 1 2 3 30 30 H 1.09003 * 109.46762 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.47302 * 119.99588 * 1 2 3 32 32 H 0.96998 * 119.99560 * 0.02562 * 4 2 1 33 33 H 1.09007 * 109.46935 * 59.99855 * 5 4 2 34 34 H 1.09001 * 109.46927 * 299.99804 * 5 4 2 35 35 H 1.08998 * 109.47353 * 59.99788 * 6 5 4 36 36 H 1.09006 * 109.47395 * 300.00044 * 6 5 4 37 37 H 1.08998 * 109.47065 * 59.99602 * 7 6 5 38 38 H 1.09001 * 109.46892 * 299.99866 * 7 6 5 39 39 H 1.09001 * 109.46902 * 60.00345 * 8 7 6 40 40 H 1.08993 * 109.47243 * 300.00020 * 8 7 6 41 41 H 1.09001 * 109.46782 * 60.00667 * 9 8 7 42 42 H 1.08993 * 109.47555 * 300.00224 * 9 8 7 43 43 H 1.09004 * 110.36390 * 322.92750 * 13 12 10 44 44 H 1.09000 * 110.36912 * 85.14287 * 13 12 10 45 45 H 1.08996 * 111.00691 * 81.06419 * 14 13 12 46 46 H 1.09002 * 111.00619 * 204.87941 * 14 13 12 47 47 H 0.97000 * 119.99733 * 266.45650 * 17 15 14 48 48 H 0.96996 * 120.00078 * 180.02562 * 21 20 18 49 49 H 1.08993 * 109.47317 * 58.54428 * 28 26 12 50 50 H 1.09007 * 109.47202 * 178.54743 * 28 26 12 51 51 H 1.09001 * 109.46946 * 298.54455 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0011 6 6 4.1558 -2.6098 0.0023 7 6 5.6858 -2.6099 0.0035 8 6 6.1957 -4.0524 0.0040 9 6 7.7257 -4.0524 0.0046 10 6 8.2279 -5.4733 0.0058 11 8 7.4398 -6.3951 0.0110 12 7 9.5531 -5.7196 0.0070 13 6 10.6167 -4.6988 0.0021 14 6 11.8494 -5.4135 -0.6057 15 6 11.7057 -6.8403 -0.0134 16 1 12.1219 -6.8838 0.9930 17 7 12.3494 -7.8292 -0.8817 18 6 13.6856 -8.0952 -0.7434 19 1 14.2648 -7.5763 0.0060 20 6 14.2956 -9.0318 -1.5665 21 7 13.5898 -9.6647 -2.4795 22 14 16.1182 -9.3952 -1.3773 23 1 16.3042 -10.4986 -0.4011 24 1 16.6819 -9.7964 -2.6913 25 1 16.8172 -8.1793 -0.8892 26 6 10.1771 -7.0507 0.0197 27 1 9.8939 -7.5842 0.9271 28 6 9.7368 -7.8437 -1.2124 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 1.6957 -2.0072 0.0005 33 1 4.0088 -0.6533 0.8911 34 1 4.0095 -0.6537 -0.8889 35 1 3.7928 -3.1242 -0.8875 36 1 3.7921 -3.1231 0.8925 37 1 6.0484 -2.0956 0.8935 38 1 6.0498 -2.0965 -0.8865 39 1 5.8331 -4.5663 -0.8863 40 1 5.8317 -4.5662 0.8937 41 1 8.0887 -3.5385 0.8947 42 1 8.0895 -3.5388 -0.8852 43 1 10.3259 -3.8508 -0.6180 44 1 10.8305 -4.3689 1.0187 45 1 11.7915 -5.4346 -1.6940 46 1 12.7758 -4.9440 -0.2749 47 1 11.8292 -8.2956 -1.5546 48 1 14.0160 -10.3194 -3.0543 49 1 10.0183 -7.2999 -2.1141 50 1 10.2232 -8.8192 -1.2097 51 1 8.6552 -7.9770 -1.1913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180078800.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:46 Heat of formation + Delta-G solvation = -80.238444 kcal Electronic energy + Delta-G solvation = -26963.333756 eV Core-core repulsion = 23090.148378 eV Total energy + Delta-G solvation = -3873.185378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.06419 -39.94826 -37.73047 -36.60474 -34.61989 -34.18701 -32.10962 -31.43718 -30.70504 -29.98969 -28.84035 -26.48291 -25.21877 -23.68296 -22.94348 -22.12292 -21.60349 -20.74360 -19.49992 -18.55593 -17.53162 -17.20925 -16.83031 -16.58392 -16.38250 -15.96271 -15.42771 -15.25403 -14.78842 -14.40149 -14.03473 -13.90167 -13.63222 -13.54585 -13.26326 -13.06611 -12.98609 -12.71202 -12.54301 -12.34594 -12.28976 -12.00880 -11.79427 -11.53801 -11.47329 -11.40430 -11.35360 -11.18010 -10.99327 -10.83040 -10.81244 -10.47048 -10.31408 -10.22948 -9.99840 -9.73738 -9.53134 -9.45672 -8.96731 -8.38690 -7.04140 -5.83398 -3.13303 2.21651 2.77650 2.82068 3.18392 3.39849 3.45242 3.46834 4.29790 4.37121 4.51756 4.53598 4.60794 4.66065 4.80051 4.85553 4.91090 5.03161 5.07318 5.16219 5.22244 5.27063 5.32374 5.36856 5.46880 5.50222 5.52009 5.54216 5.59186 5.63160 5.65412 5.75524 5.82066 5.98692 6.01287 6.04354 6.10159 6.14690 6.21996 6.31786 6.55110 6.55820 6.71219 6.82597 6.98119 7.03987 7.64455 7.78311 7.79814 8.34701 8.38185 9.46799 10.01985 10.36952 11.39065 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.044259 B = 0.001559 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.491869 B =17950.175984 C =18259.871997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.507 3.493 3 O -0.548 6.548 4 N -0.733 5.733 5 C 0.116 3.884 6 C -0.131 4.131 7 C -0.117 4.117 8 C -0.102 4.102 9 C -0.136 4.136 10 C 0.524 3.476 11 O -0.546 6.546 12 N -0.611 5.611 13 C 0.098 3.902 14 C -0.154 4.154 15 C 0.173 3.827 16 H 0.062 0.938 17 N -0.718 5.718 18 C -0.245 4.245 19 H 0.071 0.929 20 C -0.010 4.010 21 N -0.931 5.931 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.128 3.872 27 H 0.070 0.930 28 C -0.158 4.158 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.402 0.598 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.391 0.609 48 H 0.256 0.744 49 H 0.055 0.945 50 H 0.078 0.922 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.000 16.771 5.730 28.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.294 3.706 3 O -0.426 6.426 4 N -0.386 5.386 5 C -0.008 4.008 6 C -0.169 4.169 7 C -0.155 4.155 8 C -0.140 4.140 9 C -0.176 4.176 10 C 0.313 3.687 11 O -0.424 6.424 12 N -0.345 5.345 13 C -0.025 4.025 14 C -0.195 4.195 15 C 0.061 3.939 16 H 0.080 0.920 17 N -0.361 5.361 18 C -0.376 4.376 19 H 0.089 0.911 20 C -0.206 4.206 21 N -0.579 5.579 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.024 3.976 27 H 0.088 0.912 28 C -0.216 4.216 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.236 0.764 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.229 0.771 48 H 0.066 0.934 49 H 0.074 0.926 50 H 0.097 0.903 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.865 17.008 5.756 28.293 hybrid contribution 0.801 -0.739 -0.196 1.108 sum -21.064 16.269 5.559 27.190 Atomic orbital electron populations 1.21928 0.91609 1.05625 1.04305 1.20854 0.90710 0.83469 0.75525 1.90736 1.70969 1.31482 1.49384 1.46110 1.07744 1.08841 1.75876 1.21425 0.79298 0.97540 1.02514 1.21796 0.96728 0.95266 1.03093 1.21518 0.94000 0.97318 1.02649 1.21320 0.93161 0.95838 1.03715 1.21655 0.97496 0.94306 1.04168 1.20307 0.80686 0.91474 0.76258 1.90671 1.54526 1.46636 1.50601 1.48673 1.04878 1.08571 1.72366 1.22372 0.88362 0.91329 1.00480 1.23544 0.95581 0.98876 1.01495 1.21180 0.88789 0.88967 0.94961 0.92024 1.42674 1.07808 1.45364 1.40275 1.19239 0.85346 1.18121 1.14877 0.91072 1.24750 0.98142 0.99265 0.98487 1.69657 1.35169 1.29631 1.23418 0.86180 0.84958 0.78067 0.76882 1.21662 1.21762 1.20723 1.21811 0.94089 0.82752 0.98912 0.91210 1.21992 1.01392 1.01067 0.97136 0.89351 0.88950 0.89344 0.76399 0.91441 0.91413 0.91061 0.91098 0.91509 0.91480 0.91107 0.91146 0.89172 0.89118 0.91375 0.91711 0.90690 0.90623 0.77104 0.93376 0.92580 0.90321 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.65 10.32 36.01 0.37 -0.28 16 2 C 0.51 3.98 7.94 -10.99 -0.09 3.90 16 3 O -0.55 -7.02 17.09 5.56 0.10 -6.92 16 4 N -0.73 -4.26 5.56 -60.30 -0.33 -4.60 16 5 C 0.12 0.77 5.67 -4.05 -0.02 0.74 16 6 C -0.13 -0.72 5.33 -26.73 -0.14 -0.86 16 7 C -0.12 -0.74 5.21 -26.73 -0.14 -0.88 16 8 C -0.10 -0.91 4.50 -26.73 -0.12 -1.03 16 9 C -0.14 -1.33 4.71 -27.88 -0.13 -1.46 16 10 C 0.52 7.63 7.63 -10.98 -0.08 7.54 16 11 O -0.55 -9.82 14.87 5.56 0.08 -9.74 16 12 N -0.61 -9.13 3.08 -163.01 -0.50 -9.63 16 13 C 0.10 1.22 6.69 -2.53 -0.02 1.21 16 14 C -0.15 -2.45 6.77 -24.59 -0.17 -2.62 16 15 C 0.17 3.29 3.45 -66.09 -0.23 3.06 16 16 H 0.06 1.17 8.12 -51.93 -0.42 0.75 16 17 N -0.72 -17.24 5.02 -51.64 -0.26 -17.50 16 18 C -0.24 -6.53 9.98 -15.06 -0.15 -6.68 16 19 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 21 N -0.93 -27.43 13.06 55.49 0.72 -26.70 16 22 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.13 2.26 3.49 -66.95 -0.23 2.02 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 28 C -0.16 -2.98 7.93 37.16 0.29 -2.68 16 29 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.39 8.12 -51.93 -0.42 -0.03 16 31 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.40 1.19 8.47 -40.82 -0.35 0.85 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 40 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.09 0.77 7.84 -51.93 -0.41 0.36 16 43 H 0.07 0.70 7.48 -51.93 -0.39 0.31 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.39 9.95 4.94 -40.82 -0.20 9.75 16 48 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 49 H 0.06 1.08 8.05 -51.93 -0.42 0.66 16 50 H 0.08 1.61 6.74 -51.93 -0.35 1.27 16 51 H 0.06 1.14 6.74 -51.93 -0.35 0.79 16 LS Contribution 409.36 15.07 6.17 6.17 Total: -1.00 -34.45 409.36 -9.19 -43.64 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -9.19 Total: 6.89 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -0.95 Total: 1.61 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: -0.37 Total: -58.43 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: 0.18 Total: -16.66 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.45 -9.19 -43.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180078800.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.599 kcal (2) G-P(sol) polarization free energy of solvation -34.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds