Wall clock time and date at job start Fri Apr 10 2020 18:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21274 * 119.99988 * 2 1 4 4 N 1.34778 * 119.99741 * 179.97438 * 2 1 3 5 5 C 1.46498 * 120.00064 * 180.02562 * 4 2 1 6 6 C 1.52994 * 109.47313 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47367 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.47184 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.46813 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.46624 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00521 * 359.73045 * 10 9 8 12 12 N 1.34784 * 119.99774 * 180.02562 * 10 9 8 13 13 C 1.47426 * 125.64631 * 359.75325 * 12 10 9 14 14 C 1.54906 * 104.82959 * 204.09278 * 13 12 10 15 15 C 1.55155 * 101.58202 * 322.98796 * 14 13 12 16 16 H 1.08998 * 110.72241 * 276.96555 * 15 14 13 17 17 N 1.46503 * 110.71980 * 153.86751 * 15 14 13 18 18 C 1.36941 * 120.00297 * 86.45509 * 17 15 14 19 19 H 1.08004 * 119.99604 * 0.02562 * 18 17 15 20 20 C 1.38803 * 120.00076 * 180.02562 * 18 17 15 21 21 N 1.31618 * 120.00518 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99936 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47010 * 89.99611 * 22 20 18 24 24 H 1.48497 * 109.47242 * 209.99798 * 22 20 18 25 25 H 1.48503 * 109.46755 * 330.00108 * 22 20 18 26 26 C 1.47018 * 125.64699 * 179.44586 * 12 10 9 27 27 H 1.09004 * 109.88164 * 298.39212 * 26 12 10 28 28 C 1.52996 * 109.88443 * 59.56251 * 26 12 10 29 29 H 1.09001 * 109.47391 * 240.00392 * 1 2 3 30 30 H 1.09003 * 109.46762 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.47302 * 119.99588 * 1 2 3 32 32 H 0.96998 * 119.99560 * 0.02562 * 4 2 1 33 33 H 1.09007 * 109.46935 * 59.99855 * 5 4 2 34 34 H 1.09001 * 109.46927 * 299.99804 * 5 4 2 35 35 H 1.08998 * 109.47353 * 59.99788 * 6 5 4 36 36 H 1.09006 * 109.47395 * 300.00044 * 6 5 4 37 37 H 1.08998 * 109.47065 * 59.99602 * 7 6 5 38 38 H 1.09001 * 109.46892 * 299.99866 * 7 6 5 39 39 H 1.09001 * 109.46902 * 60.00345 * 8 7 6 40 40 H 1.08993 * 109.47243 * 300.00020 * 8 7 6 41 41 H 1.09001 * 109.46782 * 60.00667 * 9 8 7 42 42 H 1.08993 * 109.47555 * 300.00224 * 9 8 7 43 43 H 1.09004 * 110.36390 * 322.92750 * 13 12 10 44 44 H 1.09000 * 110.36912 * 85.14287 * 13 12 10 45 45 H 1.08996 * 111.00691 * 81.06419 * 14 13 12 46 46 H 1.09002 * 111.00619 * 204.87941 * 14 13 12 47 47 H 0.97000 * 119.99733 * 266.45650 * 17 15 14 48 48 H 0.96996 * 120.00078 * 180.02562 * 21 20 18 49 49 H 1.08993 * 109.47317 * 58.54428 * 28 26 12 50 50 H 1.09007 * 109.47202 * 178.54743 * 28 26 12 51 51 H 1.09001 * 109.46946 * 298.54455 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0011 6 6 4.1558 -2.6098 0.0023 7 6 5.6858 -2.6099 0.0035 8 6 6.1957 -4.0524 0.0040 9 6 7.7257 -4.0524 0.0046 10 6 8.2279 -5.4733 0.0058 11 8 7.4398 -6.3951 0.0110 12 7 9.5531 -5.7196 0.0070 13 6 10.6167 -4.6988 0.0021 14 6 11.8494 -5.4135 -0.6057 15 6 11.7057 -6.8403 -0.0134 16 1 12.1219 -6.8838 0.9930 17 7 12.3494 -7.8292 -0.8817 18 6 13.6856 -8.0952 -0.7434 19 1 14.2648 -7.5763 0.0060 20 6 14.2956 -9.0318 -1.5665 21 7 13.5898 -9.6647 -2.4795 22 14 16.1182 -9.3952 -1.3773 23 1 16.3042 -10.4986 -0.4011 24 1 16.6819 -9.7964 -2.6913 25 1 16.8172 -8.1793 -0.8892 26 6 10.1771 -7.0507 0.0197 27 1 9.8939 -7.5842 0.9271 28 6 9.7368 -7.8437 -1.2124 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 1.6957 -2.0072 0.0005 33 1 4.0088 -0.6533 0.8911 34 1 4.0095 -0.6537 -0.8889 35 1 3.7928 -3.1242 -0.8875 36 1 3.7921 -3.1231 0.8925 37 1 6.0484 -2.0956 0.8935 38 1 6.0498 -2.0965 -0.8865 39 1 5.8331 -4.5663 -0.8863 40 1 5.8317 -4.5662 0.8937 41 1 8.0887 -3.5385 0.8947 42 1 8.0895 -3.5388 -0.8852 43 1 10.3259 -3.8508 -0.6180 44 1 10.8305 -4.3689 1.0187 45 1 11.7915 -5.4346 -1.6940 46 1 12.7758 -4.9440 -0.2749 47 1 11.8292 -8.2956 -1.5546 48 1 14.0160 -10.3194 -3.0543 49 1 10.0183 -7.2999 -2.1141 50 1 10.2232 -8.8192 -1.2097 51 1 8.6552 -7.9770 -1.1913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180078800.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:46 Heat of formation + Delta-G solvation = -103.817542 kcal Electronic energy + Delta-G solvation = -26964.356222 eV Core-core repulsion = 23090.148378 eV Total energy + Delta-G solvation = -3874.207844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.27562 -40.58426 -39.00477 -37.26895 -35.90744 -35.31249 -33.53130 -32.47013 -32.01853 -30.84088 -30.07990 -27.23366 -26.77702 -25.36011 -24.06618 -22.98463 -22.22113 -21.32104 -20.84177 -19.79766 -19.43108 -18.01355 -17.73919 -17.29174 -17.00267 -16.93117 -16.54526 -16.53135 -16.05642 -15.71240 -15.46313 -14.83705 -14.69827 -14.57885 -14.38102 -13.93872 -13.90431 -13.57410 -13.37807 -13.36451 -13.15763 -12.99706 -12.99367 -12.89518 -12.84896 -12.79857 -12.52433 -12.14619 -12.08103 -12.03115 -11.96600 -11.92231 -11.59553 -11.51720 -11.39618 -10.98063 -10.91272 -10.69840 -10.10955 -9.62227 -9.00735 -7.93486 -5.22578 1.49616 1.50890 1.59107 1.64234 1.70519 2.01369 2.33042 2.58208 3.37315 3.52176 3.79183 3.82703 3.90413 3.92873 3.96714 4.01466 4.13989 4.21282 4.25964 4.38190 4.42235 4.49101 4.53625 4.57821 4.62844 4.64540 4.66778 4.69882 4.78755 4.82601 4.86775 4.92415 4.99370 5.04318 5.07971 5.10537 5.20785 5.23759 5.27183 5.36221 5.42658 5.47033 5.51069 5.54145 5.55797 6.28174 6.58092 6.65534 7.23185 7.26930 7.35460 8.09408 8.32843 9.30221 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.044259 B = 0.001559 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.491869 B =17950.175984 C =18259.871997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.499 3.501 3 O -0.607 6.607 4 N -0.722 5.722 5 C 0.117 3.883 6 C -0.122 4.122 7 C -0.110 4.110 8 C -0.098 4.098 9 C -0.127 4.127 10 C 0.517 3.483 11 O -0.588 6.588 12 N -0.613 5.613 13 C 0.106 3.894 14 C -0.146 4.146 15 C 0.164 3.836 16 H 0.065 0.935 17 N -0.734 5.734 18 C -0.239 4.239 19 H 0.081 0.919 20 C -0.075 4.075 21 N -0.971 5.971 22 Si 0.973 3.027 23 H -0.290 1.290 24 H -0.299 1.299 25 H -0.266 1.266 26 C 0.134 3.866 27 H 0.061 0.939 28 C -0.143 4.143 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.417 0.583 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.054 0.946 46 H 0.087 0.913 47 H 0.380 0.620 48 H 0.250 0.750 49 H 0.046 0.954 50 H 0.054 0.946 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.506 18.919 6.923 30.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.288 3.712 3 O -0.489 6.489 4 N -0.375 5.375 5 C -0.007 4.007 6 C -0.160 4.160 7 C -0.148 4.148 8 C -0.136 4.136 9 C -0.167 4.167 10 C 0.308 3.692 11 O -0.469 6.469 12 N -0.346 5.346 13 C -0.016 4.016 14 C -0.187 4.187 15 C 0.054 3.946 16 H 0.083 0.917 17 N -0.376 5.376 18 C -0.371 4.371 19 H 0.099 0.901 20 C -0.267 4.267 21 N -0.622 5.622 22 Si 0.802 3.198 23 H -0.217 1.217 24 H -0.226 1.226 25 H -0.190 1.190 26 C 0.029 3.971 27 H 0.079 0.921 28 C -0.201 4.201 29 H 0.130 0.870 30 H 0.104 0.896 31 H 0.129 0.871 32 H 0.255 0.745 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.136 0.864 42 H 0.130 0.870 43 H 0.121 0.879 44 H 0.112 0.888 45 H 0.073 0.927 46 H 0.105 0.895 47 H 0.216 0.784 48 H 0.059 0.941 49 H 0.065 0.935 50 H 0.072 0.928 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.390 19.184 6.992 30.302 hybrid contribution 0.886 -1.418 -0.519 1.751 sum -21.504 17.766 6.473 28.635 Atomic orbital electron populations 1.21934 0.88301 1.05939 1.06460 1.21632 0.92395 0.82908 0.74248 1.90707 1.72371 1.33493 1.52289 1.46076 1.07606 1.09248 1.74575 1.21348 0.79849 0.97992 1.01484 1.21705 0.96322 0.94380 1.03553 1.21456 0.94336 0.95561 1.03467 1.21259 0.92801 0.97125 1.02392 1.21731 0.97733 0.90822 1.06379 1.21278 0.79915 0.93179 0.74839 1.90656 1.55451 1.48435 1.52323 1.48753 1.05749 1.07708 1.72435 1.22515 0.85626 0.90930 1.02543 1.23352 0.98168 0.96861 1.00272 1.21400 0.89180 0.89647 0.94395 0.91715 1.42858 1.07248 1.46648 1.40874 1.19659 0.86543 1.16948 1.13908 0.90074 1.25543 1.02211 1.00010 0.98947 1.69823 1.36709 1.30805 1.24850 0.85151 0.80334 0.78141 0.76180 1.21733 1.22614 1.19049 1.21526 0.93505 0.84475 0.97615 0.92059 1.21801 1.00684 0.99981 0.97628 0.87027 0.89634 0.87096 0.74549 0.92426 0.92595 0.90735 0.90509 0.90510 0.90845 0.92737 0.92318 0.86433 0.87022 0.87938 0.88848 0.92682 0.89464 0.78416 0.94138 0.93453 0.92752 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 10.32 71.24 0.74 -0.18 16 2 C 0.50 7.41 7.94 87.66 0.70 8.11 16 3 O -0.61 -15.77 17.09 -3.01 -0.05 -15.82 16 4 N -0.72 -7.35 5.56 -463.07 -2.57 -9.92 16 5 C 0.12 1.41 5.67 86.38 0.49 1.90 16 6 C -0.12 -1.09 5.33 30.59 0.16 -0.93 16 7 C -0.11 -1.10 5.21 30.60 0.16 -0.94 16 8 C -0.10 -1.52 4.50 30.60 0.14 -1.38 16 9 C -0.13 -2.04 4.71 29.85 0.14 -1.90 16 10 C 0.52 14.07 7.63 87.65 0.67 14.74 16 11 O -0.59 -20.96 14.87 -3.04 -0.05 -21.00 16 12 N -0.61 -17.07 3.08 -788.03 -2.43 -19.49 16 13 C 0.11 2.24 6.69 86.85 0.58 2.82 16 14 C -0.15 -4.35 6.77 31.98 0.22 -4.13 16 15 C 0.16 6.11 3.45 46.18 0.16 6.27 16 16 H 0.06 2.38 8.12 -2.39 -0.02 2.36 16 17 N -0.73 -35.73 5.02 -317.31 -1.59 -37.32 16 18 C -0.24 -12.74 9.98 84.03 0.84 -11.90 16 19 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 20 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 21 N -0.97 -58.85 13.06 21.65 0.28 -58.57 16 22 Si 0.97 45.14 29.55 68.60 2.03 47.17 16 23 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 24 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 26 C 0.13 4.69 3.49 45.35 0.16 4.85 16 27 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 28 C -0.14 -5.57 7.93 71.98 0.57 -5.00 16 29 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.08 0.62 8.12 -2.39 -0.02 0.60 16 31 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.42 1.55 8.47 -92.71 -0.79 0.77 16 33 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 40 H 0.06 1.05 8.10 -2.39 -0.02 1.04 16 41 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.11 1.39 7.84 -2.39 -0.02 1.38 16 43 H 0.10 1.56 7.48 -2.38 -0.02 1.54 16 44 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 47 H 0.38 20.05 4.94 -92.71 -0.46 19.59 16 48 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 49 H 0.05 1.88 8.05 -2.39 -0.02 1.87 16 50 H 0.05 2.36 6.74 -2.38 -0.02 2.34 16 51 H 0.06 2.21 6.74 -2.39 -0.02 2.20 16 Total: -1.00 -78.37 409.36 1.47 -76.90 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: -0.33 Total: 29.47 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 6.18 Total: 8.58 kcal Atomic # 7 Polarization: -118.99 SS G_CDS: -6.31 Total: -125.30 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -0.10 Total: -36.82 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -78.37 1.47 -76.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180078800.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.918 kcal (2) G-P(sol) polarization free energy of solvation -78.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds