Wall clock time and date at job start Fri Apr 10 2020 18:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.87226 * 2 1 4 4 C 1.54325 * 109.88054 * 121.00844 * 2 1 3 5 5 H 1.08993 * 110.72326 * 215.58963 * 4 2 1 6 6 N 1.46501 * 110.71973 * 338.86742 * 4 2 1 7 7 C 1.36939 * 119.99402 * 199.97558 * 6 4 2 8 8 H 1.07995 * 120.00873 * 359.97438 * 7 6 4 9 9 C 1.38822 * 119.99744 * 179.97438 * 7 6 4 10 10 N 1.31623 * 119.99435 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 120.00136 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47508 * 60.00186 * 11 9 7 13 13 H 1.48499 * 109.47052 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.47004 * 299.99899 * 11 9 7 15 15 C 1.55157 * 102.94374 * 97.22671 * 4 2 1 16 16 C 1.54918 * 101.58155 * 35.49936 * 15 4 2 17 17 N 1.47015 * 109.88489 * 238.81643 * 2 1 3 18 18 C 1.34781 * 125.64697 * 59.48179 * 17 2 1 19 19 O 1.21281 * 119.99960 * 359.97438 * 18 17 2 20 20 C 1.50701 * 119.99923 * 179.97438 * 18 17 2 21 21 N 1.46502 * 109.47044 * 179.97438 * 20 18 17 22 22 C 1.34776 * 120.00001 * 179.97438 * 21 20 18 23 23 O 1.21286 * 119.99950 * 0.02562 * 22 21 20 24 24 C 1.50697 * 120.00015 * 179.97438 * 22 21 20 25 25 C 1.52999 * 109.47316 * 180.02562 * 24 22 21 26 26 C 1.53004 * 109.47136 * 60.00268 * 25 24 22 27 27 C 1.52999 * 109.47490 * 180.02562 * 25 24 22 28 28 C 1.52999 * 109.47127 * 300.00675 * 25 24 22 29 29 H 1.08999 * 109.47715 * 298.98763 * 1 2 3 30 30 H 1.08999 * 109.46866 * 58.99475 * 1 2 3 31 31 H 1.09004 * 109.47034 * 178.98588 * 1 2 3 32 32 H 0.96995 * 120.00198 * 19.96665 * 6 4 2 33 33 H 0.97006 * 119.99177 * 179.97438 * 10 9 7 34 34 H 1.09001 * 111.00846 * 153.57645 * 15 4 2 35 35 H 1.09000 * 111.00346 * 277.43176 * 15 4 2 36 36 H 1.08999 * 110.35942 * 81.82689 * 16 15 4 37 37 H 1.08996 * 110.36556 * 204.15522 * 16 15 4 38 38 H 1.08995 * 109.47462 * 299.99937 * 20 18 17 39 39 H 1.09009 * 109.46879 * 60.00324 * 20 18 17 40 40 H 0.96994 * 120.00097 * 0.02562 * 21 20 18 41 41 H 1.08995 * 109.47344 * 300.00625 * 24 22 21 42 42 H 1.09005 * 109.46966 * 60.00416 * 24 22 21 43 43 H 1.09005 * 109.46803 * 60.00078 * 26 25 24 44 44 H 1.08994 * 109.47609 * 179.97438 * 26 25 24 45 45 H 1.08999 * 109.47054 * 300.00215 * 26 25 24 46 46 H 1.09009 * 109.46649 * 60.00539 * 27 25 24 47 47 H 1.09000 * 109.47380 * 179.97438 * 27 25 24 48 48 H 1.08995 * 109.47121 * 300.00503 * 27 25 24 49 49 H 1.08999 * 109.47310 * 59.99634 * 28 25 24 50 50 H 1.09009 * 109.47306 * 179.97438 * 28 25 24 51 51 H 1.08998 * 109.47146 * 299.99267 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7476 1.2439 5 1 2.9655 -0.2808 1.6188 6 7 1.0291 -0.7992 2.2887 7 6 1.3876 -1.0364 3.5888 8 1 2.4263 -1.1857 3.8441 9 6 0.4158 -1.0847 4.5790 10 7 -0.8502 -0.9032 4.2679 11 14 0.9048 -1.4074 6.3527 12 1 1.8323 -0.3426 6.8121 13 1 -0.3090 -1.4103 7.2081 14 1 1.5799 -2.7268 6.4478 15 6 2.3518 -2.1684 0.6957 16 6 2.8568 -1.8509 -0.7340 17 7 2.0300 -0.7158 -1.1827 18 6 1.7742 -0.3890 -2.4651 19 8 1.0761 0.5697 -2.7188 20 6 2.3556 -1.2150 -3.5835 21 7 1.9330 -0.6592 -4.8715 22 6 2.3357 -1.2383 -6.0200 23 8 3.0475 -2.2198 -5.9872 24 6 1.9006 -0.6670 -7.3448 25 6 2.4910 -1.5054 -8.4804 26 6 1.9958 -2.9480 -8.3599 27 6 2.0498 -0.9250 -9.8255 28 6 4.0182 -1.4813 -8.3913 29 1 -0.3634 0.4980 0.8989 30 1 -0.3633 0.5294 -0.8808 31 1 -0.3633 -1.0275 -0.0182 32 1 0.0962 -0.6653 2.0595 33 1 -1.5292 -0.9374 4.9598 34 1 3.1270 -2.6600 1.2837 35 1 1.4452 -2.7726 0.6646 36 1 3.9091 -1.5677 -0.7103 37 1 2.7088 -2.7101 -1.3881 38 1 3.4435 -1.1986 -3.5197 39 1 2.0019 -2.2426 -3.4981 40 1 1.3641 0.1259 -4.8978 41 1 0.8127 -0.6845 -7.4084 42 1 2.2531 0.3610 -7.4306 43 1 0.9077 -2.9651 -8.4233 44 1 2.4159 -3.5453 -9.1690 45 1 2.3104 -3.3613 -7.4016 46 1 2.4030 0.1027 -9.9112 47 1 2.4707 -1.5220 -10.6345 48 1 0.9618 -0.9417 -9.8892 49 1 4.3328 -1.8946 -7.4331 50 1 4.4388 -2.0791 -9.2001 51 1 4.3710 -0.4536 -8.4773 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180177703.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:49 Heat of formation + Delta-G solvation = -62.481389 kcal Electronic energy + Delta-G solvation = -28211.360332 eV Core-core repulsion = 24338.944958 eV Total energy + Delta-G solvation = -3872.415374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.64000 -39.93160 -37.82020 -36.77444 -34.55766 -34.28349 -31.86106 -30.80990 -29.94417 -28.86759 -27.46093 -27.39370 -26.69590 -25.28824 -23.49879 -22.64576 -20.95697 -20.03299 -19.25439 -18.69427 -17.73418 -17.39635 -16.49461 -16.33040 -16.15743 -15.54621 -15.12790 -14.87197 -14.65785 -14.52506 -14.34582 -14.08544 -13.78754 -13.29166 -13.23076 -12.97597 -12.76372 -12.54610 -12.37115 -12.33787 -12.10356 -12.01675 -11.85426 -11.59502 -11.49781 -11.36007 -11.30198 -11.02795 -11.01158 -10.91169 -10.85096 -10.52193 -10.30110 -10.06822 -9.85822 -9.74053 -9.64334 -9.31969 -8.99187 -8.55388 -7.07606 -5.85800 -3.15956 2.39565 2.55809 2.63949 3.26024 3.38964 3.43927 3.44797 4.33685 4.35886 4.51040 4.52449 4.54623 4.91563 4.94661 5.08426 5.15118 5.18197 5.19292 5.23731 5.25986 5.33183 5.37679 5.46535 5.50710 5.54303 5.56657 5.63038 5.68115 5.72900 5.82439 5.85888 5.93157 5.98324 6.03873 6.05435 6.14849 6.24544 6.25189 6.39107 6.47475 6.50587 6.61946 6.74788 6.91669 7.27952 7.57893 7.61946 8.00742 8.09917 8.32625 9.44257 9.98552 10.33382 11.36484 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.037723 B = 0.002021 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.064815 B =13849.042470 C =14139.939126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.129 3.871 3 H 0.073 0.927 4 C 0.173 3.827 5 H 0.064 0.936 6 N -0.717 5.717 7 C -0.246 4.246 8 H 0.071 0.929 9 C -0.010 4.010 10 N -0.931 5.931 11 Si 0.910 3.090 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.154 4.154 16 C 0.093 3.907 17 N -0.603 5.603 18 C 0.521 3.479 19 O -0.543 6.543 20 C 0.104 3.896 21 N -0.719 5.719 22 C 0.516 3.484 23 O -0.534 6.534 24 C -0.132 4.132 25 C -0.052 4.052 26 C -0.154 4.154 27 C -0.142 4.142 28 C -0.154 4.154 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.391 0.609 33 H 0.257 0.743 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.412 0.588 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.046 0.954 44 H 0.050 0.950 45 H 0.084 0.916 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.054 0.946 49 H 0.084 0.916 50 H 0.050 0.950 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.221 -0.628 -24.404 25.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.025 3.975 3 H 0.091 0.909 4 C 0.061 3.939 5 H 0.082 0.918 6 N -0.361 5.361 7 C -0.377 4.377 8 H 0.089 0.911 9 C -0.207 4.207 10 N -0.578 5.578 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.195 4.195 16 C -0.030 4.030 17 N -0.336 5.336 18 C 0.309 3.691 19 O -0.422 6.422 20 C -0.023 4.023 21 N -0.374 5.374 22 C 0.303 3.697 23 O -0.411 6.411 24 C -0.172 4.172 25 C -0.052 4.052 26 C -0.211 4.211 27 C -0.200 4.200 28 C -0.211 4.211 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.229 0.771 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.249 0.751 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.103 0.897 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.074 0.926 49 H 0.102 0.898 50 H 0.069 0.931 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.377 -0.807 -24.373 25.477 hybrid contribution -0.347 0.155 0.993 1.063 sum 7.030 -0.652 -23.380 24.422 Atomic orbital electron populations 1.22010 0.94414 1.02491 1.02785 1.21870 0.95501 0.95776 0.84322 0.90876 1.21182 0.93287 0.92051 0.87332 0.91830 1.42669 1.05166 1.85294 1.02935 1.19187 0.93039 1.41526 0.83959 0.91080 1.24769 0.95309 1.02391 0.98202 1.69652 0.99345 1.56110 1.32740 0.86238 0.77032 0.78072 0.84623 1.21196 1.21678 1.21209 1.23568 1.01818 1.01368 0.92738 1.22486 0.94642 0.88264 0.97603 1.48538 1.49804 1.30501 1.04787 1.20042 0.81119 0.85150 0.82814 1.90672 1.39210 1.29265 1.83007 1.21026 1.00970 0.97924 0.82371 1.45831 1.53505 1.33576 1.04515 1.20704 0.79860 0.83620 0.85468 1.90587 1.37144 1.26083 1.87309 1.21782 1.02719 1.01067 0.91602 1.20276 0.96303 0.95509 0.93112 1.22112 0.99990 0.95107 1.03887 1.21901 1.01124 1.00710 0.96241 1.22111 0.93960 1.01106 1.03893 0.90065 0.92141 0.92484 0.77072 0.93293 0.90398 0.90568 0.91225 0.91040 0.88550 0.88516 0.75069 0.88753 0.88781 0.93528 0.93100 0.89740 0.92676 0.92380 0.92648 0.89758 0.93103 0.93559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 7.95 37.16 0.30 -2.56 16 2 C 0.13 2.16 3.48 -66.96 -0.23 1.92 16 3 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 4 C 0.17 3.18 3.46 -66.09 -0.23 2.95 16 5 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 6 N -0.72 -16.82 5.02 -51.65 -0.26 -17.08 16 7 C -0.25 -6.46 9.98 -15.05 -0.15 -6.61 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 10 N -0.93 -27.14 13.06 55.49 0.72 -26.41 16 11 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 14 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 15 C -0.15 -2.38 6.77 -24.58 -0.17 -2.54 16 16 C 0.09 1.13 6.69 -2.52 -0.02 1.11 16 17 N -0.60 -8.53 3.08 -163.02 -0.50 -9.03 16 18 C 0.52 7.18 7.70 -10.98 -0.08 7.10 16 19 O -0.54 -8.89 14.57 5.56 0.08 -8.81 16 20 C 0.10 1.14 5.16 -5.19 -0.03 1.11 16 21 N -0.72 -7.34 5.53 -61.47 -0.34 -7.68 16 22 C 0.52 5.21 7.24 -10.99 -0.08 5.13 16 23 O -0.53 -6.67 11.35 5.55 0.06 -6.61 16 24 C -0.13 -0.97 4.77 -27.89 -0.13 -1.11 16 25 C -0.05 -0.40 0.77 -154.51 -0.12 -0.52 16 26 C -0.15 -1.34 8.18 37.16 0.30 -1.03 16 27 C -0.14 -0.88 8.47 37.16 0.31 -0.56 16 28 C -0.15 -1.31 8.17 37.16 0.30 -1.01 16 29 H 0.08 1.61 6.67 -51.93 -0.35 1.26 16 30 H 0.06 1.07 6.76 -51.93 -0.35 0.72 16 31 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 32 H 0.39 9.73 4.92 -40.82 -0.20 9.53 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.73 7.47 -51.93 -0.39 0.34 16 38 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.10 1.02 7.85 -51.92 -0.41 0.61 16 40 H 0.41 4.05 7.44 -40.82 -0.30 3.74 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.92 5.51 -51.93 -0.29 0.63 16 46 H 0.05 0.31 8.14 -51.92 -0.42 -0.12 16 47 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.08 0.90 5.51 -51.93 -0.29 0.62 16 50 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 51 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 396.24 15.07 5.97 5.97 Total: -1.00 -30.61 396.24 -8.28 -38.89 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -8.88 Total: 11.14 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -0.12 Total: 3.00 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -0.38 Total: -60.21 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.14 Total: -15.41 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.61 -8.28 -38.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180177703.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.590 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds