Wall clock time and date at job start Fri Apr 10 2020 18:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 110.39326 * 2 1 4 4 C 1.54393 * 110.33917 * 237.77151 * 2 1 3 5 5 N 1.48152 * 104.61830 * 264.99616 * 4 2 1 6 6 C 1.34770 * 127.84076 * 140.38939 * 5 4 2 7 7 O 1.21280 * 120.00096 * 179.97438 * 6 5 4 8 8 C 1.50702 * 119.99934 * 359.97438 * 6 5 4 9 9 H 1.09005 * 109.50673 * 304.99801 * 8 6 5 10 10 C 1.53090 * 109.50832 * 65.08705 * 8 6 5 11 11 N 1.47018 * 109.25589 * 176.73876 * 10 8 6 12 12 C 1.46907 * 110.99838 * 177.65110 * 11 10 8 13 13 C 1.47007 * 110.79006 * 301.44989 * 11 10 8 14 14 C 1.53094 * 109.25956 * 58.59300 * 13 11 10 15 15 O 1.43016 * 109.50390 * 184.91550 * 8 6 5 16 16 C 1.48430 * 104.33445 * 320.38857 * 5 4 2 17 17 C 1.54288 * 110.34381 * 122.23454 * 2 1 3 18 18 C 1.52997 * 110.34307 * 359.97438 * 17 2 1 19 19 C 1.53000 * 110.34148 * 237.84126 * 17 2 1 20 20 N 1.46495 * 109.46827 * 181.47639 * 19 17 2 21 21 C 1.36945 * 119.99517 * 180.02562 * 20 19 17 22 22 H 1.07992 * 119.99993 * 359.97438 * 21 20 19 23 23 C 1.38819 * 119.99668 * 179.97438 * 21 20 19 24 24 N 1.31612 * 119.99857 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00101 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46915 * 89.99896 * 25 23 21 27 27 H 1.48494 * 109.47296 * 210.00135 * 25 23 21 28 28 H 1.48496 * 109.47302 * 330.00315 * 25 23 21 29 29 H 1.09007 * 109.46866 * 297.76475 * 1 2 3 30 30 H 1.08996 * 109.47530 * 57.76192 * 1 2 3 31 31 H 1.09001 * 109.47553 * 177.77208 * 1 2 3 32 32 H 1.08999 * 110.40747 * 23.77510 * 4 2 1 33 33 H 1.09000 * 110.40970 * 146.09361 * 4 2 1 34 34 H 1.09001 * 109.50719 * 296.72167 * 10 8 6 35 35 H 1.08998 * 109.50532 * 56.84760 * 10 8 6 36 36 H 1.08990 * 109.47375 * 179.72679 * 12 11 10 37 37 H 1.09001 * 109.46849 * 299.72890 * 12 11 10 38 38 H 1.08998 * 109.47111 * 59.72513 * 12 11 10 39 39 H 1.09000 * 109.50953 * 298.65991 * 13 11 10 40 40 H 1.09004 * 109.54423 * 178.55310 * 13 11 10 41 41 H 1.08997 * 109.50913 * 183.21650 * 14 13 11 42 42 H 1.09001 * 109.54039 * 63.10737 * 14 13 11 43 43 H 1.08993 * 110.44630 * 280.87427 * 16 5 4 44 44 H 1.09004 * 110.48684 * 158.35782 * 16 5 4 45 45 H 1.09002 * 109.47153 * 298.52458 * 18 17 2 46 46 H 1.09001 * 109.46832 * 178.52649 * 18 17 2 47 47 H 1.09004 * 109.47261 * 58.52630 * 18 17 2 48 48 H 1.08999 * 109.46985 * 301.47809 * 19 17 2 49 49 H 1.09001 * 109.46624 * 61.47562 * 19 17 2 50 50 H 0.96997 * 120.00552 * 359.97438 * 20 19 17 51 51 H 0.97000 * 119.99919 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0666 -0.7720 -1.2246 5 7 2.3138 -2.1439 -0.7228 6 6 2.0767 -3.3105 -1.3545 7 8 2.3359 -4.3607 -0.8061 8 6 1.4896 -3.3101 -2.7425 9 1 0.5600 -2.7409 -2.7443 10 6 2.4821 -2.6711 -3.7173 11 7 1.9376 -2.7441 -5.0809 12 6 2.8361 -2.0907 -6.0422 13 6 1.6792 -4.1392 -5.4657 14 6 0.6943 -4.7625 -4.4732 15 8 1.2266 -4.6555 -3.1501 16 6 2.8818 -1.9423 0.6336 17 6 2.0663 -0.7716 1.2237 18 6 0.9062 -1.3031 2.0677 19 6 2.9672 0.1313 2.0687 20 7 3.4935 -0.6295 3.2046 21 6 4.3290 -0.0249 4.1055 22 1 4.6003 1.0127 3.9783 23 6 4.8273 -0.7457 5.1821 24 7 5.6308 -0.1647 6.0477 25 14 4.3575 -2.5401 5.4025 26 1 5.3385 -3.3994 4.6923 27 1 4.3588 -2.8782 6.8485 28 1 3.0017 -2.7693 4.8419 29 1 -0.3633 0.4788 0.9094 30 1 -0.3634 0.5482 -0.8692 31 1 -0.3634 -1.0269 -0.0399 32 1 1.3221 -0.7870 -2.0206 33 1 2.9937 -0.3229 -1.5807 34 1 2.6411 -1.6281 -3.4433 35 1 3.4300 -3.2076 -3.6753 36 1 2.4118 -2.1634 -7.0435 37 1 2.9547 -1.0411 -5.7731 38 1 3.8085 -2.5828 -6.0230 39 1 2.6139 -4.6998 -5.4516 40 1 1.2528 -4.1679 -6.4684 41 1 0.5437 -5.8132 -4.7211 42 1 -0.2587 -4.2360 -4.5259 43 1 3.9367 -1.6760 0.5689 44 1 2.7517 -2.8394 1.2389 45 1 0.3111 -0.4669 2.4349 46 1 1.3004 -1.8673 2.9129 47 1 0.2805 -1.9537 1.4567 48 1 3.7950 0.4923 1.4584 49 1 2.3895 0.9796 2.4359 50 1 3.2495 -1.5613 3.3191 51 1 5.9787 -0.6682 6.8002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181008982.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:59 Heat of formation + Delta-G solvation = -45.056214 kcal Electronic energy + Delta-G solvation = -29709.339683 eV Core-core repulsion = 25837.679921 eV Total energy + Delta-G solvation = -3871.659762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.84224 -39.71420 -38.06044 -36.05719 -35.02157 -33.32215 -31.88034 -31.60430 -30.04295 -29.24475 -27.60544 -26.24308 -25.68515 -24.69743 -24.48140 -22.94268 -21.24578 -20.91207 -19.63465 -18.76050 -17.83119 -17.27466 -16.62257 -16.48782 -16.11655 -15.56024 -15.41786 -15.30998 -14.59054 -14.51785 -14.26554 -14.13238 -13.93156 -13.79212 -13.64979 -13.22084 -12.88343 -12.79173 -12.55990 -12.49810 -12.39718 -12.12926 -12.01328 -11.82659 -11.72835 -11.47520 -11.42847 -11.27790 -11.13324 -10.84217 -10.45930 -10.41860 -10.25220 -10.08294 -10.00056 -9.73131 -9.55552 -8.93755 -8.89680 -8.72395 -7.22698 -5.76311 -3.11749 2.47853 2.52056 3.30686 3.40279 3.43990 3.48837 3.64027 4.24121 4.37059 4.46485 4.47452 4.55104 4.60852 4.65810 4.72699 4.79897 4.86024 5.00992 5.05970 5.09817 5.16751 5.26497 5.29479 5.32269 5.36046 5.39457 5.41133 5.47666 5.48348 5.55862 5.66072 5.72247 5.79177 5.88391 5.92305 5.99523 6.09065 6.13068 6.29166 6.35764 6.39794 6.44197 6.52924 6.63528 6.70285 6.72489 7.47905 7.99369 8.09520 8.42726 9.21708 9.94318 10.13512 11.42073 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.018745 B = 0.003130 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.408926 B = 8943.056222 C = 9371.472332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.092 0.908 4 C 0.100 3.900 5 N -0.618 5.618 6 C 0.539 3.461 7 O -0.518 6.518 8 C 0.084 3.916 9 H 0.091 0.909 10 C 0.026 3.974 11 N -0.540 5.540 12 C 0.024 3.976 13 C 0.013 3.987 14 C 0.062 3.938 15 O -0.356 6.356 16 C 0.118 3.882 17 C -0.080 4.080 18 C -0.134 4.134 19 C 0.173 3.827 20 N -0.755 5.755 21 C -0.244 4.244 22 H 0.090 0.910 23 C 0.006 3.994 24 N -0.934 5.934 25 Si 0.880 3.120 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.277 1.277 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.029 0.971 39 H 0.046 0.954 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.050 0.950 48 H 0.029 0.971 49 H 0.032 0.968 50 H 0.362 0.638 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.095 -2.159 -26.714 29.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 H 0.110 0.890 4 C -0.023 4.023 5 N -0.354 5.354 6 C 0.326 3.674 7 O -0.392 6.392 8 C 0.023 3.977 9 H 0.109 0.891 10 C -0.102 4.102 11 N -0.265 5.265 12 C -0.124 4.124 13 C -0.115 4.115 14 C -0.015 4.015 15 O -0.273 6.273 16 C -0.003 4.003 17 C -0.081 4.081 18 C -0.191 4.191 19 C 0.046 3.954 20 N -0.401 5.401 21 C -0.374 4.374 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.582 5.582 25 Si 0.710 3.290 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.203 1.203 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.047 0.953 49 H 0.049 0.951 50 H 0.195 0.805 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.240 -2.598 -26.251 29.081 hybrid contribution 0.550 -1.412 0.060 1.516 sum -11.690 -4.010 -26.191 28.960 Atomic orbital electron populations 1.21923 0.94391 1.01878 1.01849 1.22123 0.96369 0.99628 0.93390 0.88978 1.22632 1.00734 0.81804 0.97144 1.48970 1.63198 1.04985 1.18218 1.19556 0.78794 0.82637 0.86454 1.90753 1.51123 1.30318 1.67024 1.21835 0.98834 0.85478 0.91595 0.89099 1.22753 0.96503 1.02272 0.88688 1.62223 1.46361 1.15947 1.01957 1.22401 0.94368 0.99585 0.96041 1.22866 0.99861 0.88600 1.00153 1.22757 0.95698 1.01716 0.81322 1.88141 1.84316 1.23829 1.31050 1.22590 0.97513 0.98819 0.81426 1.21776 0.96281 0.95226 0.94826 1.21896 0.97045 1.00909 0.99281 1.20689 0.93764 0.92763 0.88214 1.42754 1.58073 1.10850 1.28402 1.19032 1.19263 0.97054 1.02006 0.89205 1.24649 0.99396 0.97555 0.97361 1.69695 1.36706 1.36028 1.15775 0.86625 0.78373 0.86784 0.77206 1.20950 1.21683 1.20276 0.91692 0.92946 0.92484 0.90216 0.90604 0.88588 0.93144 0.90916 0.90802 0.95238 0.93575 0.89225 0.87751 0.91949 0.89956 0.89951 0.91969 0.92200 0.93053 0.95277 0.95055 0.80504 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 7.92 37.15 0.29 -1.04 16 2 C -0.10 -1.00 3.31 -89.22 -0.30 -1.29 16 3 H 0.09 0.89 7.71 -51.93 -0.40 0.49 16 4 C 0.10 0.95 4.97 -2.40 -0.01 0.94 16 5 N -0.62 -8.10 3.32 -169.07 -0.56 -8.66 16 6 C 0.54 8.03 7.29 -10.99 -0.08 7.95 16 7 O -0.52 -10.19 16.78 -14.27 -0.24 -10.43 16 8 C 0.08 0.97 2.51 -27.84 -0.07 0.90 16 9 H 0.09 0.91 7.73 -51.93 -0.40 0.51 16 10 C 0.03 0.25 4.75 -3.71 -0.02 0.23 16 11 N -0.54 -4.35 4.98 -242.60 -1.21 -5.56 16 12 C 0.02 0.15 9.61 60.07 0.58 0.72 16 13 C 0.01 0.10 5.66 -3.72 -0.02 0.08 16 14 C 0.06 0.52 7.01 37.21 0.26 0.78 16 15 O -0.36 -4.60 10.01 -55.06 -0.55 -5.15 16 16 C 0.12 1.83 5.64 -2.25 -0.01 1.82 16 17 C -0.08 -1.14 0.73 -153.11 -0.11 -1.25 16 18 C -0.13 -1.97 7.08 37.16 0.26 -1.71 16 19 C 0.17 3.11 4.85 -4.04 -0.02 3.09 16 20 N -0.75 -17.40 4.92 -59.91 -0.29 -17.70 16 21 C -0.24 -6.81 10.47 -15.05 -0.16 -6.97 16 22 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 23 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 24 N -0.93 -29.43 13.97 55.49 0.78 -28.66 16 25 Si 0.88 22.52 27.74 -169.99 -4.71 17.81 16 26 H -0.28 -7.27 7.11 56.52 0.40 -6.86 16 27 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 28 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 29 H 0.06 0.63 6.84 -51.92 -0.36 0.27 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.57 6.76 -51.93 -0.35 0.22 16 32 H 0.08 0.60 6.39 -51.93 -0.33 0.26 16 33 H 0.08 0.64 8.11 -51.93 -0.42 0.21 16 34 H 0.10 0.77 6.05 -51.93 -0.31 0.45 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.36 8.13 -51.93 -0.42 -0.07 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 1.33 7.85 -51.93 -0.41 0.93 16 44 H 0.08 1.47 7.61 -51.93 -0.40 1.07 16 45 H 0.06 0.85 6.89 -51.93 -0.36 0.50 16 46 H 0.06 1.03 6.87 -51.93 -0.36 0.68 16 47 H 0.05 0.70 6.71 -51.93 -0.35 0.35 16 48 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 49 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.36 8.34 4.09 -40.82 -0.17 8.17 16 51 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 385.28 15.07 5.81 5.81 Total: -1.00 -34.98 385.28 -9.34 -44.31 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -8.85 Total: 3.89 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 0.50 Total: 4.33 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -1.29 Total: -60.57 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.79 Total: -15.58 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.71 Total: 17.81 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.98 -9.34 -44.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181008982.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.741 kcal (2) G-P(sol) polarization free energy of solvation -34.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds