Wall clock time and date at job start Fri Apr 10 2020 18:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 110.39326 * 2 1 4 4 C 1.54393 * 110.33917 * 237.77151 * 2 1 3 5 5 N 1.48152 * 104.61830 * 264.99616 * 4 2 1 6 6 C 1.34770 * 127.84076 * 140.38939 * 5 4 2 7 7 O 1.21280 * 120.00096 * 179.97438 * 6 5 4 8 8 C 1.50702 * 119.99934 * 359.97438 * 6 5 4 9 9 H 1.09005 * 109.50673 * 304.99801 * 8 6 5 10 10 C 1.53090 * 109.50832 * 65.08705 * 8 6 5 11 11 N 1.47018 * 109.25589 * 176.73876 * 10 8 6 12 12 C 1.46907 * 110.99838 * 177.65110 * 11 10 8 13 13 C 1.47007 * 110.79006 * 301.44989 * 11 10 8 14 14 C 1.53094 * 109.25956 * 58.59300 * 13 11 10 15 15 O 1.43016 * 109.50390 * 184.91550 * 8 6 5 16 16 C 1.48430 * 104.33445 * 320.38857 * 5 4 2 17 17 C 1.54288 * 110.34381 * 122.23454 * 2 1 3 18 18 C 1.52997 * 110.34307 * 359.97438 * 17 2 1 19 19 C 1.53000 * 110.34148 * 237.84126 * 17 2 1 20 20 N 1.46495 * 109.46827 * 181.47639 * 19 17 2 21 21 C 1.36945 * 119.99517 * 180.02562 * 20 19 17 22 22 H 1.07992 * 119.99993 * 359.97438 * 21 20 19 23 23 C 1.38819 * 119.99668 * 179.97438 * 21 20 19 24 24 N 1.31612 * 119.99857 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00101 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46915 * 89.99896 * 25 23 21 27 27 H 1.48494 * 109.47296 * 210.00135 * 25 23 21 28 28 H 1.48496 * 109.47302 * 330.00315 * 25 23 21 29 29 H 1.09007 * 109.46866 * 297.76475 * 1 2 3 30 30 H 1.08996 * 109.47530 * 57.76192 * 1 2 3 31 31 H 1.09001 * 109.47553 * 177.77208 * 1 2 3 32 32 H 1.08999 * 110.40747 * 23.77510 * 4 2 1 33 33 H 1.09000 * 110.40970 * 146.09361 * 4 2 1 34 34 H 1.09001 * 109.50719 * 296.72167 * 10 8 6 35 35 H 1.08998 * 109.50532 * 56.84760 * 10 8 6 36 36 H 1.08990 * 109.47375 * 179.72679 * 12 11 10 37 37 H 1.09001 * 109.46849 * 299.72890 * 12 11 10 38 38 H 1.08998 * 109.47111 * 59.72513 * 12 11 10 39 39 H 1.09000 * 109.50953 * 298.65991 * 13 11 10 40 40 H 1.09004 * 109.54423 * 178.55310 * 13 11 10 41 41 H 1.08997 * 109.50913 * 183.21650 * 14 13 11 42 42 H 1.09001 * 109.54039 * 63.10737 * 14 13 11 43 43 H 1.08993 * 110.44630 * 280.87427 * 16 5 4 44 44 H 1.09004 * 110.48684 * 158.35782 * 16 5 4 45 45 H 1.09002 * 109.47153 * 298.52458 * 18 17 2 46 46 H 1.09001 * 109.46832 * 178.52649 * 18 17 2 47 47 H 1.09004 * 109.47261 * 58.52630 * 18 17 2 48 48 H 1.08999 * 109.46985 * 301.47809 * 19 17 2 49 49 H 1.09001 * 109.46624 * 61.47562 * 19 17 2 50 50 H 0.96997 * 120.00552 * 359.97438 * 20 19 17 51 51 H 0.97000 * 119.99919 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0666 -0.7720 -1.2246 5 7 2.3138 -2.1439 -0.7228 6 6 2.0767 -3.3105 -1.3545 7 8 2.3359 -4.3607 -0.8061 8 6 1.4896 -3.3101 -2.7425 9 1 0.5600 -2.7409 -2.7443 10 6 2.4821 -2.6711 -3.7173 11 7 1.9376 -2.7441 -5.0809 12 6 2.8361 -2.0907 -6.0422 13 6 1.6792 -4.1392 -5.4657 14 6 0.6943 -4.7625 -4.4732 15 8 1.2266 -4.6555 -3.1501 16 6 2.8818 -1.9423 0.6336 17 6 2.0663 -0.7716 1.2237 18 6 0.9062 -1.3031 2.0677 19 6 2.9672 0.1313 2.0687 20 7 3.4935 -0.6295 3.2046 21 6 4.3290 -0.0249 4.1055 22 1 4.6003 1.0127 3.9783 23 6 4.8273 -0.7457 5.1821 24 7 5.6308 -0.1647 6.0477 25 14 4.3575 -2.5401 5.4025 26 1 5.3385 -3.3994 4.6923 27 1 4.3588 -2.8782 6.8485 28 1 3.0017 -2.7693 4.8419 29 1 -0.3633 0.4788 0.9094 30 1 -0.3634 0.5482 -0.8692 31 1 -0.3634 -1.0269 -0.0399 32 1 1.3221 -0.7870 -2.0206 33 1 2.9937 -0.3229 -1.5807 34 1 2.6411 -1.6281 -3.4433 35 1 3.4300 -3.2076 -3.6753 36 1 2.4118 -2.1634 -7.0435 37 1 2.9547 -1.0411 -5.7731 38 1 3.8085 -2.5828 -6.0230 39 1 2.6139 -4.6998 -5.4516 40 1 1.2528 -4.1679 -6.4684 41 1 0.5437 -5.8132 -4.7211 42 1 -0.2587 -4.2360 -4.5259 43 1 3.9367 -1.6760 0.5689 44 1 2.7517 -2.8394 1.2389 45 1 0.3111 -0.4669 2.4349 46 1 1.3004 -1.8673 2.9129 47 1 0.2805 -1.9537 1.4567 48 1 3.7950 0.4923 1.4584 49 1 2.3895 0.9796 2.4359 50 1 3.2495 -1.5613 3.3191 51 1 5.9787 -0.6682 6.8002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181008982.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:58 Heat of formation + Delta-G solvation = -70.871145 kcal Electronic energy + Delta-G solvation = -29710.459102 eV Core-core repulsion = 25837.679921 eV Total energy + Delta-G solvation = -3872.779181 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.84209 -40.60938 -39.18968 -36.84335 -36.58585 -34.72976 -33.33449 -32.66764 -31.44149 -29.92872 -28.68310 -27.56330 -26.68264 -25.71620 -25.10454 -24.54973 -22.47190 -21.67342 -20.69116 -20.20870 -19.37828 -18.39676 -17.53618 -17.32724 -17.08332 -16.64508 -16.34351 -16.29738 -16.01971 -15.57664 -15.54254 -15.22119 -15.15686 -14.78071 -14.68455 -14.58527 -14.20487 -13.91555 -13.61394 -13.45956 -13.32388 -13.23761 -13.01197 -12.85725 -12.84558 -12.65165 -12.54441 -12.46980 -12.35993 -12.10979 -11.87539 -11.81515 -11.49891 -11.46003 -11.25347 -11.00342 -10.88934 -10.80492 -9.83798 -9.55241 -9.27962 -8.04318 -5.35190 1.33659 1.35903 1.38149 1.41273 1.52472 2.44587 2.66267 2.84588 3.27966 3.31322 3.50265 3.56416 3.60987 3.74298 3.84742 3.92760 3.94024 4.09984 4.20142 4.24278 4.27093 4.28522 4.44003 4.49059 4.56213 4.59961 4.62076 4.62746 4.69386 4.74264 4.77072 4.82107 4.86405 4.88827 5.01150 5.02017 5.02670 5.06409 5.11225 5.25640 5.35853 5.41872 5.59440 5.74529 5.76870 5.85559 5.97377 6.20762 6.44052 6.98247 7.07597 7.85493 8.01553 9.17462 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.018745 B = 0.003130 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.408926 B = 8943.056222 C = 9371.472332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 H 0.109 0.891 4 C 0.098 3.902 5 N -0.611 5.611 6 C 0.533 3.467 7 O -0.579 6.579 8 C 0.092 3.908 9 H 0.114 0.886 10 C 0.033 3.967 11 N -0.539 5.539 12 C 0.022 3.978 13 C 0.014 3.986 14 C 0.056 3.944 15 O -0.393 6.393 16 C 0.117 3.883 17 C -0.071 4.071 18 C -0.130 4.130 19 C 0.170 3.830 20 N -0.759 5.759 21 C -0.224 4.224 22 H 0.065 0.935 23 C -0.058 4.058 24 N -0.982 5.982 25 Si 0.939 3.061 26 H -0.284 1.284 27 H -0.294 1.294 28 H -0.258 1.258 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.027 0.973 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.022 0.978 39 H 0.032 0.968 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.050 0.950 45 H 0.073 0.927 46 H 0.028 0.972 47 H 0.061 0.939 48 H 0.035 0.965 49 H 0.037 0.963 50 H 0.362 0.638 51 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.327 -1.195 -30.131 33.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 H 0.128 0.872 4 C -0.023 4.023 5 N -0.345 5.345 6 C 0.321 3.679 7 O -0.458 6.458 8 C 0.031 3.969 9 H 0.132 0.868 10 C -0.095 4.095 11 N -0.264 5.264 12 C -0.125 4.125 13 C -0.114 4.114 14 C -0.020 4.020 15 O -0.312 6.312 16 C -0.006 4.006 17 C -0.072 4.072 18 C -0.187 4.187 19 C 0.044 3.956 20 N -0.404 5.404 21 C -0.355 4.355 22 H 0.083 0.917 23 C -0.250 4.250 24 N -0.633 5.633 25 Si 0.768 3.232 26 H -0.211 1.211 27 H -0.220 1.220 28 H -0.183 1.183 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.130 0.870 33 H 0.113 0.887 34 H 0.133 0.867 35 H 0.045 0.955 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.041 0.959 39 H 0.051 0.949 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.092 0.908 46 H 0.047 0.953 47 H 0.080 0.920 48 H 0.053 0.947 49 H 0.055 0.945 50 H 0.195 0.805 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.519 -1.588 -29.743 33.136 hybrid contribution 1.238 -1.632 1.036 2.296 sum -13.280 -3.220 -28.707 31.794 Atomic orbital electron populations 1.21908 0.93000 1.01796 1.03066 1.22148 0.97436 0.99887 0.91255 0.87242 1.22949 1.02713 0.79212 0.97456 1.48983 1.62031 1.06300 1.17161 1.20322 0.77935 0.82032 0.87599 1.90716 1.53849 1.32569 1.68659 1.21818 0.99861 0.85643 0.89589 0.86821 1.22683 0.94804 1.02647 0.89405 1.62290 1.46468 1.16202 1.01429 1.22494 0.93819 0.99854 0.96356 1.22913 0.99169 0.88175 1.01147 1.23020 0.96292 1.03024 0.79645 1.88099 1.84915 1.24767 1.33420 1.22406 0.97447 0.97947 0.82799 1.21651 0.95225 0.94557 0.95814 1.21860 0.97282 1.01130 0.98420 1.20903 0.94484 0.93142 0.87073 1.42833 1.57435 1.11175 1.29005 1.19069 1.18348 0.95980 1.02067 0.91673 1.25331 1.00336 1.01601 0.97747 1.69845 1.38918 1.37711 1.16832 0.85649 0.78875 0.81925 0.76785 1.21112 1.22011 1.18326 0.92098 0.90066 0.93330 0.87005 0.88694 0.86688 0.95472 0.89306 0.89737 0.95927 0.94947 0.86600 0.86514 0.90551 0.91031 0.93110 0.90769 0.95302 0.92040 0.94674 0.94529 0.80472 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 7.92 71.98 0.57 -1.46 16 2 C -0.09 -1.52 3.31 -9.89 -0.03 -1.55 16 3 H 0.11 1.61 7.71 -2.39 -0.02 1.59 16 4 C 0.10 1.48 4.97 86.53 0.43 1.91 16 5 N -0.61 -15.15 3.32 -807.20 -2.68 -17.83 16 6 C 0.53 15.62 7.29 87.66 0.64 16.26 16 7 O -0.58 -23.61 16.78 15.93 0.27 -23.34 16 8 C 0.09 1.96 2.51 29.88 0.08 2.03 16 9 H 0.11 1.87 7.73 -2.38 -0.02 1.85 16 10 C 0.03 0.55 4.75 86.31 0.41 0.96 16 11 N -0.54 -7.00 4.98 -921.46 -4.59 -11.59 16 12 C 0.02 0.20 9.61 127.69 1.23 1.43 16 13 C 0.01 0.17 5.66 86.31 0.49 0.66 16 14 C 0.06 0.83 7.01 72.01 0.50 1.33 16 15 O -0.39 -9.85 10.01 -130.02 -1.30 -11.15 16 16 C 0.12 3.60 5.64 86.48 0.49 4.09 16 17 C -0.07 -1.92 0.73 -51.27 -0.04 -1.96 16 18 C -0.13 -3.67 7.08 71.98 0.51 -3.16 16 19 C 0.17 5.90 4.85 86.38 0.42 6.32 16 20 N -0.76 -34.98 4.92 -343.46 -1.69 -36.67 16 21 C -0.22 -12.66 10.47 84.03 0.88 -11.78 16 22 H 0.07 3.97 8.06 -2.91 -0.02 3.94 16 23 C -0.06 -3.50 5.50 84.86 0.47 -3.04 16 24 N -0.98 -63.57 13.97 21.65 0.30 -63.27 16 25 Si 0.94 47.55 27.74 68.60 1.90 49.45 16 26 H -0.28 -14.37 7.11 99.48 0.71 -13.66 16 27 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16 28 H -0.26 -12.12 6.52 99.48 0.65 -11.47 16 29 H 0.06 0.95 6.84 -2.38 -0.02 0.94 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.80 6.76 -2.39 -0.02 0.78 16 32 H 0.11 1.05 6.39 -2.39 -0.02 1.04 16 33 H 0.09 1.16 8.11 -2.39 -0.02 1.14 16 34 H 0.12 1.41 6.05 -2.39 -0.01 1.39 16 35 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.09 0.54 8.13 -2.39 -0.02 0.52 16 37 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.02 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.03 0.49 8.14 -2.39 -0.02 0.48 16 40 H 0.12 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.07 2.34 7.85 -2.39 -0.02 2.32 16 44 H 0.05 1.88 7.61 -2.38 -0.02 1.86 16 45 H 0.07 1.90 6.89 -2.39 -0.02 1.88 16 46 H 0.03 0.98 6.87 -2.39 -0.02 0.96 16 47 H 0.06 1.61 6.71 -2.38 -0.02 1.59 16 48 H 0.04 1.21 8.12 -2.39 -0.02 1.19 16 49 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.36 16.72 4.09 -92.71 -0.38 16.34 16 51 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -80.06 385.28 -0.28 -80.34 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.47 Total: 22.00 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 7.04 Total: 12.05 kcal Atomic # 7 Polarization: -120.69 SS G_CDS: -8.66 Total: -129.35 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -1.03 Total: -34.49 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 1.90 Total: 49.45 kcal Total: -80.06 -0.28 -80.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181008982.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.473 kcal (2) G-P(sol) polarization free energy of solvation -80.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds