Wall clock time and date at job start Fri Apr 10 2020 18:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46894 * 109.47397 * 2 1 4 4 C 1.46903 * 110.99772 * 45.69517 * 3 2 1 5 5 C 1.52782 * 109.42010 * 187.11309 * 4 3 2 6 6 H 1.09001 * 109.46170 * 66.18335 * 5 4 3 7 7 C 1.52999 * 109.55695 * 186.61001 * 5 4 3 8 8 N 1.47080 * 108.76900 * 306.42708 * 5 4 3 9 9 C 1.34779 * 120.88050 * 231.12108 * 8 5 4 10 10 O 1.21350 * 120.00037 * 7.91466 * 9 8 5 11 11 C 1.49451 * 120.00085 * 187.91070 * 9 8 5 12 12 O 1.21354 * 119.99743 * 6.45833 * 11 9 8 13 13 N 1.34771 * 120.00247 * 186.45266 * 11 9 8 14 14 C 1.46497 * 120.00113 * 179.97438 * 13 11 9 15 15 C 1.52999 * 109.46948 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.46899 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47385 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99482 * 359.97438 * 17 16 15 19 19 C 1.37870 * 120.00138 * 180.02562 * 17 16 15 20 20 N 1.31524 * 119.99857 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00348 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47244 * 90.00174 * 21 19 17 23 23 H 1.48496 * 109.47521 * 210.00362 * 21 19 17 24 24 H 1.48502 * 109.47230 * 330.00409 * 21 19 17 25 25 C 1.47081 * 118.23816 * 50.85263 * 8 5 4 26 26 C 1.46902 * 111.00163 * 169.99640 * 3 2 1 27 27 H 1.08993 * 109.51650 * 292.71872 * 26 3 2 28 28 C 1.53002 * 109.49045 * 52.78709 * 26 3 2 29 29 H 1.08994 * 109.47198 * 300.00447 * 1 2 3 30 30 H 1.09001 * 109.46904 * 59.99989 * 1 2 3 31 31 H 1.08996 * 109.47554 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47225 * 239.99922 * 2 1 3 33 33 H 1.09001 * 109.46904 * 120.00011 * 2 1 3 34 34 H 1.08993 * 109.49180 * 307.21201 * 4 3 2 35 35 H 1.08997 * 109.48960 * 67.29741 * 4 3 2 36 36 H 1.09003 * 109.47404 * 184.78525 * 7 5 4 37 37 H 1.08996 * 109.47520 * 304.78610 * 7 5 4 38 38 H 1.08999 * 109.47036 * 64.78944 * 7 5 4 39 39 H 0.96993 * 119.99802 * 0.02562 * 13 11 9 40 40 H 1.09004 * 109.46963 * 60.00300 * 14 13 11 41 41 H 1.08997 * 109.47192 * 300.00511 * 14 13 11 42 42 H 1.08995 * 109.47389 * 60.01054 * 15 14 13 43 43 H 1.08997 * 109.47407 * 300.00153 * 15 14 13 44 44 H 1.08996 * 109.47576 * 299.99955 * 16 15 14 45 45 H 1.09004 * 109.47097 * 60.00023 * 16 15 14 46 46 H 0.96999 * 119.99576 * 179.97438 * 20 19 17 47 47 H 1.08999 * 109.62792 * 68.79900 * 25 8 5 48 48 H 1.09000 * 109.62882 * 189.38547 * 25 8 5 49 49 H 1.08998 * 109.46974 * 179.86047 * 28 26 3 50 50 H 1.08999 * 109.47137 * 299.86409 * 28 26 3 51 51 H 1.09006 * 109.46786 * 59.86417 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.2920 2.2005 0.9815 5 6 1.7024 3.6644 0.8296 6 1 1.3641 4.0380 -0.1369 7 6 1.0746 4.4915 1.9532 8 7 3.1683 3.7555 0.9088 9 6 3.7628 4.6258 1.7488 10 8 3.0970 5.2436 2.5536 11 6 5.2422 4.8299 1.6893 12 8 5.8924 4.3031 0.8105 13 7 5.8540 5.5991 2.6115 14 6 7.3041 5.7987 2.5534 15 6 7.7407 6.7048 3.7063 16 6 9.2552 6.9138 3.6453 17 6 9.6854 7.8058 4.7812 18 1 8.9519 8.1860 5.4768 19 6 11.0152 8.1373 4.9318 20 7 11.3906 8.9163 5.9229 21 14 12.2837 7.4803 3.7283 22 1 12.4316 8.4308 2.5969 23 1 13.5890 7.3268 4.4196 24 1 11.8391 6.1610 3.2116 25 6 3.9681 2.8676 0.0514 26 6 3.4685 1.4310 0.2382 27 1 3.6810 1.1014 1.2552 28 6 4.1789 0.5101 -0.7559 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.2198 2.1026 0.8123 35 1 1.5344 1.8603 1.9882 36 1 1.2978 5.5468 1.7959 37 1 -0.0055 4.3446 1.9526 38 1 1.4842 4.1726 2.9116 39 1 5.3342 6.0199 3.3140 40 1 7.5690 6.2646 1.6042 41 1 7.8071 4.8354 2.6382 42 1 7.4760 6.2386 4.6553 43 1 7.2377 7.6681 3.6219 44 1 9.7586 5.9507 3.7295 45 1 9.5197 7.3802 2.6963 46 1 12.3262 9.1492 6.0290 47 1 3.8517 3.1631 -0.9913 48 1 5.0179 2.9303 0.3377 49 1 5.2541 0.5465 -0.5804 50 1 3.8233 -0.5116 -0.6227 51 1 3.9653 0.8395 -1.7728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343147696.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:36 Heat of formation + Delta-G solvation = -43.215880 kcal Electronic energy + Delta-G solvation = -28483.562253 eV Core-core repulsion = 24611.982295 eV Total energy + Delta-G solvation = -3871.579959 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.32568 -39.54239 -38.47367 -36.14240 -35.28593 -33.93194 -33.35323 -31.61620 -31.50681 -29.46055 -27.72588 -26.93250 -25.69372 -24.81714 -22.91425 -22.34041 -21.62972 -20.75570 -20.38795 -19.49528 -17.72902 -16.93606 -16.71096 -16.38150 -16.25494 -15.99121 -15.49806 -15.30163 -15.26169 -14.93436 -14.51799 -14.24050 -13.96796 -13.80785 -13.33366 -13.10087 -12.98829 -12.74647 -12.64305 -12.44535 -12.27015 -12.23357 -12.10823 -11.99444 -11.85599 -11.76074 -11.51758 -11.23574 -11.14413 -11.10310 -10.93892 -10.57326 -10.13822 -9.94546 -9.77159 -9.26151 -9.16253 -9.05302 -8.97590 -8.62923 -8.57606 -6.07975 -4.07066 1.34048 2.19383 3.10085 3.27931 3.29334 3.37024 3.40112 3.50077 4.26645 4.41455 4.42159 4.46699 4.52573 4.67500 4.80852 4.86760 4.91290 4.92525 5.03804 5.15855 5.25617 5.28817 5.32024 5.40394 5.41957 5.47174 5.48935 5.53900 5.55028 5.60411 5.70997 5.72356 5.85318 5.89297 5.90270 5.97248 6.20550 6.31123 6.36377 6.54656 6.59202 6.67062 6.71872 6.92460 7.17745 7.23474 7.31402 7.67256 7.73202 7.96635 8.48265 8.96019 9.53741 11.05203 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.024170 B = 0.002217 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.205821 B =12628.344944 C =13475.253811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.049 3.951 3 N -0.535 5.535 4 C 0.039 3.961 5 C 0.145 3.855 6 H 0.083 0.917 7 C -0.141 4.141 8 N -0.583 5.583 9 C 0.509 3.491 10 O -0.514 6.514 11 C 0.500 3.500 12 O -0.521 6.521 13 N -0.689 5.689 14 C 0.111 3.889 15 C -0.115 4.115 16 C -0.010 4.010 17 C -0.523 4.523 18 H 0.072 0.928 19 C 0.066 3.934 20 N -0.902 5.902 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.265 1.265 25 C 0.084 3.916 26 C 0.066 3.934 27 H 0.044 0.956 28 C -0.145 4.145 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.032 0.968 34 H 0.096 0.904 35 H 0.038 0.962 36 H 0.076 0.924 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.413 0.587 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.019 0.981 45 H 0.015 0.985 46 H 0.263 0.737 47 H 0.077 0.923 48 H 0.143 0.857 49 H 0.067 0.933 50 H 0.059 0.941 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.046 -18.351 -13.880 32.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.078 4.078 3 N -0.261 5.261 4 C -0.090 4.090 5 C 0.042 3.958 6 H 0.101 0.899 7 C -0.198 4.198 8 N -0.317 5.317 9 C 0.292 3.708 10 O -0.390 6.390 11 C 0.280 3.720 12 O -0.399 6.399 13 N -0.340 5.340 14 C -0.011 4.011 15 C -0.153 4.153 16 C -0.048 4.048 17 C -0.561 4.561 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.541 5.541 21 Si 0.708 3.292 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.189 1.189 25 C -0.037 4.037 26 C -0.043 4.043 27 H 0.062 0.938 28 C -0.203 4.203 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.050 0.950 34 H 0.114 0.886 35 H 0.057 0.943 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.249 0.751 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.037 0.963 45 H 0.033 0.967 46 H 0.073 0.927 47 H 0.095 0.905 48 H 0.160 0.840 49 H 0.086 0.914 50 H 0.078 0.922 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.847 -18.094 -14.435 32.523 hybrid contribution 0.637 -0.469 0.503 0.937 sum -22.210 -18.563 -13.932 32.125 Atomic orbital electron populations 1.21964 0.95032 1.02019 1.02518 1.22125 0.95589 0.89102 1.00980 1.62114 1.03613 1.10810 1.49569 1.22633 0.99702 0.92676 0.93971 1.21437 0.78423 0.95248 1.00693 0.89902 1.22228 0.98469 1.00931 0.98203 1.48055 1.07006 1.36907 1.39750 1.20228 0.88627 0.80632 0.81327 1.90814 1.64218 1.47826 1.36155 1.20217 0.88335 0.80524 0.82876 1.90503 1.66480 1.47720 1.35219 1.46047 1.10269 1.48098 1.29564 1.21858 0.77058 1.01024 1.01177 1.21742 0.99810 0.98046 0.95732 1.19502 0.90438 0.97255 0.97617 1.21086 0.94007 1.29369 1.11631 0.90945 1.25036 0.98565 0.94603 0.95321 1.69917 1.16949 1.36337 1.30860 0.86768 0.80892 0.80155 0.81420 1.20234 1.21365 1.18924 1.22990 0.99050 0.86400 0.95291 1.22101 0.87454 0.96341 0.98384 0.93794 1.21833 1.00369 0.98565 0.99541 0.92347 0.91642 0.92100 0.90164 0.94950 0.88604 0.94339 0.90543 0.93273 0.90865 0.75127 0.91043 0.91088 0.91824 0.91802 0.96259 0.96666 0.92676 0.90511 0.84026 0.91437 0.92226 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 9.16 37.16 0.34 -0.49 16 2 C 0.05 0.32 5.03 -3.83 -0.02 0.30 16 3 N -0.54 -4.30 4.63 -226.64 -1.05 -5.35 16 4 C 0.04 0.31 4.31 -3.93 -0.02 0.29 16 5 C 0.14 1.35 3.63 -67.73 -0.25 1.11 16 6 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 7 C -0.14 -1.36 7.60 37.16 0.28 -1.07 16 8 N -0.58 -6.50 3.02 -165.69 -0.50 -7.00 16 9 C 0.51 6.61 7.67 -11.58 -0.09 6.52 16 10 O -0.51 -7.18 12.00 5.50 0.07 -7.12 16 11 C 0.50 7.02 7.74 -11.59 -0.09 6.93 16 12 O -0.52 -7.94 13.20 5.49 0.07 -7.87 16 13 N -0.69 -9.61 5.55 -60.73 -0.34 -9.95 16 14 C 0.11 1.73 5.67 -4.04 -0.02 1.71 16 15 C -0.12 -2.10 5.27 -26.73 -0.14 -2.24 16 16 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 17 C -0.52 -14.60 9.66 -34.44 -0.33 -14.93 16 18 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 19 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 20 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 21 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 25 C 0.08 0.87 5.39 -3.60 -0.02 0.85 16 26 C 0.07 0.58 2.57 -67.58 -0.17 0.40 16 27 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 28 C -0.15 -1.02 8.73 37.16 0.32 -0.70 16 29 H 0.06 0.30 6.18 -51.93 -0.32 -0.02 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.48 6.85 -51.93 -0.36 0.13 16 33 H 0.03 0.22 8.08 -51.93 -0.42 -0.20 16 34 H 0.10 0.62 5.73 -51.93 -0.30 0.32 16 35 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.86 6.80 -51.93 -0.35 0.51 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.83 6.76 -51.93 -0.35 0.48 16 39 H 0.41 5.32 7.96 -40.82 -0.32 5.00 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 45 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 46 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 47 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.14 1.68 4.45 -54.15 -0.24 1.44 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 51 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 388.81 15.07 5.86 5.86 Total: -1.00 -30.89 388.81 -9.05 -39.94 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -8.85 Total: 1.35 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -0.41 Total: 0.15 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -1.11 Total: -49.10 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.14 Total: -14.99 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.89 -9.05 -39.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343147696.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.275 kcal (2) G-P(sol) polarization free energy of solvation -30.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds