Wall clock time and date at job start Fri Apr 10 2020 18:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46894 * 109.47397 * 2 1 4 4 C 1.46903 * 110.99772 * 45.69517 * 3 2 1 5 5 C 1.52782 * 109.42010 * 187.11309 * 4 3 2 6 6 H 1.09001 * 109.46170 * 66.18335 * 5 4 3 7 7 C 1.52999 * 109.55695 * 186.61001 * 5 4 3 8 8 N 1.47080 * 108.76900 * 306.42708 * 5 4 3 9 9 C 1.34779 * 120.88050 * 231.12108 * 8 5 4 10 10 O 1.21350 * 120.00037 * 7.91466 * 9 8 5 11 11 C 1.49451 * 120.00085 * 187.91070 * 9 8 5 12 12 O 1.21354 * 119.99743 * 6.45833 * 11 9 8 13 13 N 1.34771 * 120.00247 * 186.45266 * 11 9 8 14 14 C 1.46497 * 120.00113 * 179.97438 * 13 11 9 15 15 C 1.52999 * 109.46948 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.46899 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47385 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99482 * 359.97438 * 17 16 15 19 19 C 1.37870 * 120.00138 * 180.02562 * 17 16 15 20 20 N 1.31524 * 119.99857 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00348 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47244 * 90.00174 * 21 19 17 23 23 H 1.48496 * 109.47521 * 210.00362 * 21 19 17 24 24 H 1.48502 * 109.47230 * 330.00409 * 21 19 17 25 25 C 1.47081 * 118.23816 * 50.85263 * 8 5 4 26 26 C 1.46902 * 111.00163 * 169.99640 * 3 2 1 27 27 H 1.08993 * 109.51650 * 292.71872 * 26 3 2 28 28 C 1.53002 * 109.49045 * 52.78709 * 26 3 2 29 29 H 1.08994 * 109.47198 * 300.00447 * 1 2 3 30 30 H 1.09001 * 109.46904 * 59.99989 * 1 2 3 31 31 H 1.08996 * 109.47554 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47225 * 239.99922 * 2 1 3 33 33 H 1.09001 * 109.46904 * 120.00011 * 2 1 3 34 34 H 1.08993 * 109.49180 * 307.21201 * 4 3 2 35 35 H 1.08997 * 109.48960 * 67.29741 * 4 3 2 36 36 H 1.09003 * 109.47404 * 184.78525 * 7 5 4 37 37 H 1.08996 * 109.47520 * 304.78610 * 7 5 4 38 38 H 1.08999 * 109.47036 * 64.78944 * 7 5 4 39 39 H 0.96993 * 119.99802 * 0.02562 * 13 11 9 40 40 H 1.09004 * 109.46963 * 60.00300 * 14 13 11 41 41 H 1.08997 * 109.47192 * 300.00511 * 14 13 11 42 42 H 1.08995 * 109.47389 * 60.01054 * 15 14 13 43 43 H 1.08997 * 109.47407 * 300.00153 * 15 14 13 44 44 H 1.08996 * 109.47576 * 299.99955 * 16 15 14 45 45 H 1.09004 * 109.47097 * 60.00023 * 16 15 14 46 46 H 0.96999 * 119.99576 * 179.97438 * 20 19 17 47 47 H 1.08999 * 109.62792 * 68.79900 * 25 8 5 48 48 H 1.09000 * 109.62882 * 189.38547 * 25 8 5 49 49 H 1.08998 * 109.46974 * 179.86047 * 28 26 3 50 50 H 1.08999 * 109.47137 * 299.86409 * 28 26 3 51 51 H 1.09006 * 109.46786 * 59.86417 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.2920 2.2005 0.9815 5 6 1.7024 3.6644 0.8296 6 1 1.3641 4.0380 -0.1369 7 6 1.0746 4.4915 1.9532 8 7 3.1683 3.7555 0.9088 9 6 3.7628 4.6258 1.7488 10 8 3.0970 5.2436 2.5536 11 6 5.2422 4.8299 1.6893 12 8 5.8924 4.3031 0.8105 13 7 5.8540 5.5991 2.6115 14 6 7.3041 5.7987 2.5534 15 6 7.7407 6.7048 3.7063 16 6 9.2552 6.9138 3.6453 17 6 9.6854 7.8058 4.7812 18 1 8.9519 8.1860 5.4768 19 6 11.0152 8.1373 4.9318 20 7 11.3906 8.9163 5.9229 21 14 12.2837 7.4803 3.7283 22 1 12.4316 8.4308 2.5969 23 1 13.5890 7.3268 4.4196 24 1 11.8391 6.1610 3.2116 25 6 3.9681 2.8676 0.0514 26 6 3.4685 1.4310 0.2382 27 1 3.6810 1.1014 1.2552 28 6 4.1789 0.5101 -0.7559 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.2198 2.1026 0.8123 35 1 1.5344 1.8603 1.9882 36 1 1.2978 5.5468 1.7959 37 1 -0.0055 4.3446 1.9526 38 1 1.4842 4.1726 2.9116 39 1 5.3342 6.0199 3.3140 40 1 7.5690 6.2646 1.6042 41 1 7.8071 4.8354 2.6382 42 1 7.4760 6.2386 4.6553 43 1 7.2377 7.6681 3.6219 44 1 9.7586 5.9507 3.7295 45 1 9.5197 7.3802 2.6963 46 1 12.3262 9.1492 6.0290 47 1 3.8517 3.1631 -0.9913 48 1 5.0179 2.9303 0.3377 49 1 5.2541 0.5465 -0.5804 50 1 3.8233 -0.5116 -0.6227 51 1 3.9653 0.8395 -1.7728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343147696.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:35 Heat of formation + Delta-G solvation = -64.925591 kcal Electronic energy + Delta-G solvation = -28484.503657 eV Core-core repulsion = 24611.982295 eV Total energy + Delta-G solvation = -3872.521362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.28338 -40.46371 -39.41134 -37.34266 -36.30000 -35.15348 -34.62430 -33.31145 -32.30491 -30.08540 -29.31849 -27.74261 -26.44314 -26.00362 -24.29520 -22.94891 -22.62579 -22.26115 -21.19792 -20.57580 -19.01556 -18.61400 -17.82054 -17.36862 -17.10450 -16.84015 -16.52406 -16.35220 -16.14497 -16.04556 -15.75786 -15.37507 -14.99511 -14.88242 -14.77145 -14.17034 -13.85105 -13.82176 -13.77705 -13.66448 -13.29827 -13.05493 -12.92759 -12.77646 -12.76559 -12.70025 -12.54463 -12.43629 -12.16866 -11.95081 -11.88767 -11.75362 -11.69158 -11.60646 -11.43011 -11.33713 -10.75624 -10.31384 -10.02217 -9.89004 -9.31563 -8.28574 -6.33126 0.27478 1.20380 1.38529 1.39986 1.51786 2.04235 2.34203 2.37380 2.80567 3.07094 3.23145 3.69992 3.76472 3.90725 4.01147 4.05265 4.10217 4.16858 4.20826 4.26238 4.37048 4.46785 4.54570 4.57797 4.60628 4.62081 4.73891 4.80369 4.85209 4.85943 4.89727 4.97423 5.00649 5.02195 5.09260 5.12210 5.13274 5.27838 5.29899 5.35241 5.46000 5.50016 5.54946 5.65061 5.88357 6.01702 6.07244 6.18380 6.27759 6.64807 6.75233 6.88142 7.31572 8.87950 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.024170 B = 0.002217 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.205821 B =12628.344944 C =13475.253811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.048 3.952 3 N -0.538 5.538 4 C 0.044 3.956 5 C 0.141 3.859 6 H 0.092 0.908 7 C -0.132 4.132 8 N -0.580 5.580 9 C 0.508 3.492 10 O -0.528 6.528 11 C 0.500 3.500 12 O -0.532 6.532 13 N -0.687 5.687 14 C 0.125 3.875 15 C -0.105 4.105 16 C -0.010 4.010 17 C -0.533 4.533 18 H 0.034 0.966 19 C 0.001 3.999 20 N -0.952 5.952 21 Si 0.951 3.049 22 H -0.267 1.267 23 H -0.286 1.286 24 H -0.243 1.243 25 C 0.086 3.914 26 C 0.070 3.930 27 H 0.031 0.969 28 C -0.140 4.140 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.028 0.972 34 H 0.116 0.884 35 H 0.027 0.973 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.417 0.583 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.026 0.974 45 H 0.024 0.976 46 H 0.266 0.734 47 H 0.080 0.920 48 H 0.128 0.872 49 H 0.066 0.934 50 H 0.070 0.930 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.062 -20.407 -16.135 35.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.079 4.079 3 N -0.263 5.263 4 C -0.084 4.084 5 C 0.039 3.961 6 H 0.110 0.890 7 C -0.190 4.190 8 N -0.313 5.313 9 C 0.290 3.710 10 O -0.406 6.406 11 C 0.281 3.719 12 O -0.412 6.412 13 N -0.338 5.338 14 C 0.002 3.998 15 C -0.143 4.143 16 C -0.048 4.048 17 C -0.571 4.571 18 H 0.052 0.948 19 C -0.195 4.195 20 N -0.592 5.592 21 Si 0.774 3.226 22 H -0.192 1.192 23 H -0.212 1.212 24 H -0.166 1.166 25 C -0.036 4.036 26 C -0.039 4.039 27 H 0.049 0.951 28 C -0.198 4.198 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.046 0.954 34 H 0.134 0.866 35 H 0.045 0.955 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.254 0.746 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.044 0.956 45 H 0.042 0.958 46 H 0.075 0.925 47 H 0.098 0.902 48 H 0.145 0.855 49 H 0.085 0.915 50 H 0.089 0.911 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.902 -20.177 -16.709 35.463 hybrid contribution 0.857 0.183 1.248 1.525 sum -23.044 -19.994 -15.461 34.203 Atomic orbital electron populations 1.21935 0.93909 1.02801 1.02499 1.22197 0.96520 0.88025 1.01125 1.62141 1.03067 1.11846 1.49294 1.22607 1.00807 0.91562 0.93436 1.21615 0.77148 0.96340 1.00950 0.89016 1.22089 0.99965 0.99706 0.97243 1.48190 1.08007 1.36115 1.38968 1.20054 0.88023 0.81116 0.81770 1.90823 1.64204 1.48648 1.36919 1.20433 0.88885 0.80079 0.82481 1.90515 1.66958 1.48074 1.35622 1.45920 1.09657 1.48304 1.29937 1.21551 0.78017 1.00411 0.99805 1.21519 0.96963 0.98772 0.97006 1.19457 0.93421 0.96235 0.95716 1.21477 0.93490 1.29747 1.12371 0.94799 1.26048 1.01186 0.94941 0.97365 1.70077 1.17616 1.38298 1.33249 0.85645 0.77582 0.80499 0.78854 1.19216 1.21219 1.16612 1.22948 0.98262 0.87282 0.95091 1.22032 0.88281 0.95430 0.98190 0.95135 1.21798 1.00146 0.98735 0.99081 0.92305 0.91614 0.91014 0.89436 0.95355 0.86589 0.95459 0.92321 0.90756 0.92744 0.74555 0.90849 0.90764 0.91894 0.91946 0.95596 0.95769 0.92547 0.90163 0.85492 0.91519 0.91110 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.16 71.98 0.66 -0.56 16 2 C 0.05 0.52 5.03 86.30 0.43 0.95 16 3 N -0.54 -7.60 4.63 -870.97 -4.03 -11.63 16 4 C 0.04 0.63 4.31 86.23 0.37 1.00 16 5 C 0.14 2.45 3.63 44.81 0.16 2.61 16 6 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 7 C -0.13 -2.42 7.60 71.98 0.55 -1.87 16 8 N -0.58 -12.45 3.02 -796.49 -2.40 -14.86 16 9 C 0.51 13.00 7.67 87.27 0.67 13.67 16 10 O -0.53 -14.71 12.00 -3.25 -0.04 -14.75 16 11 C 0.50 13.71 7.74 87.27 0.68 14.38 16 12 O -0.53 -15.79 13.20 -3.26 -0.04 -15.84 16 13 N -0.69 -18.61 5.55 -464.42 -2.58 -21.19 16 14 C 0.12 3.72 5.67 86.38 0.49 4.21 16 15 C -0.10 -3.74 5.27 30.60 0.16 -3.58 16 16 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 17 C -0.53 -30.20 9.66 25.60 0.25 -29.96 16 18 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 19 C 0.00 0.07 5.47 84.65 0.46 0.53 16 20 N -0.95 -59.62 13.96 21.45 0.30 -59.32 16 21 Si 0.95 43.74 27.47 68.60 1.88 45.63 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 25 C 0.09 1.68 5.39 86.35 0.47 2.15 16 26 C 0.07 1.13 2.57 45.00 0.12 1.24 16 27 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 28 C -0.14 -1.73 8.73 71.98 0.63 -1.10 16 29 H 0.06 0.46 6.18 -2.39 -0.01 0.45 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.09 0.83 6.85 -2.39 -0.02 0.81 16 33 H 0.03 0.34 8.08 -2.39 -0.02 0.32 16 34 H 0.12 1.19 5.73 -2.39 -0.01 1.18 16 35 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.06 1.29 6.80 -2.39 -0.02 1.27 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.05 1.21 6.76 -2.39 -0.02 1.19 16 39 H 0.42 10.57 7.96 -92.71 -0.74 9.83 16 40 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.03 1.12 7.20 -2.39 -0.02 1.11 16 45 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 46 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 47 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.13 2.95 4.45 -37.59 -0.17 2.78 16 49 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.07 0.72 6.56 -2.39 -0.02 0.71 16 51 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 Total: -1.00 -67.10 388.81 -0.73 -67.83 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -0.03 Total: 20.78 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 6.21 Total: 3.34 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -8.71 Total: -106.99 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.08 Total: -30.59 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.63 kcal Total: -67.10 -0.73 -67.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343147696.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.905 kcal (2) G-P(sol) polarization free energy of solvation -67.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds