Wall clock time and date at job start Fri Apr 10 2020 18:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46908 * 109.47320 * 2 1 4 4 C 1.46899 * 110.99860 * 66.04344 * 3 2 1 5 5 C 1.53003 * 109.46934 * 199.05230 * 4 3 2 6 6 C 1.46901 * 110.99970 * 190.00159 * 3 2 1 7 7 H 1.09006 * 110.88262 * 186.44848 * 6 3 2 8 8 C 1.55153 * 111.00350 * 310.33079 * 6 3 2 9 9 C 1.54324 * 102.94075 * 153.61830 * 8 6 3 10 10 N 1.47022 * 107.27352 * 337.80398 * 9 8 6 11 11 C 1.34765 * 125.65113 * 178.90543 * 10 9 8 12 12 O 1.21348 * 120.00475 * 180.02562 * 11 10 9 13 13 C 1.49458 * 120.00142 * 0.02650 * 11 10 9 14 14 O 1.21345 * 119.99542 * 0.02562 * 13 11 10 15 15 N 1.34777 * 119.99952 * 179.97438 * 13 11 10 16 16 C 1.46500 * 119.99518 * 179.97438 * 15 13 11 17 17 C 1.53007 * 109.46838 * 180.02562 * 16 15 13 18 18 C 1.53001 * 109.46824 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.46689 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00450 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99830 * 179.97438 * 19 18 17 22 22 N 1.31523 * 120.00021 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00172 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47150 * 89.99564 * 23 21 19 25 25 H 1.48503 * 109.47192 * 209.99956 * 23 21 19 26 26 H 1.48506 * 109.47086 * 329.99731 * 23 21 19 27 27 C 1.47426 * 108.69822 * 359.17188 * 10 9 8 28 28 H 1.09000 * 109.47129 * 300.00055 * 1 2 3 29 29 H 1.08999 * 109.46668 * 59.99864 * 1 2 3 30 30 H 1.08996 * 109.47061 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47129 * 239.99945 * 2 1 3 32 32 H 1.09000 * 109.47431 * 119.99609 * 2 1 3 33 33 H 1.08992 * 109.47217 * 319.05707 * 4 3 2 34 34 H 1.09004 * 109.46688 * 79.05864 * 4 3 2 35 35 H 1.08996 * 109.47216 * 297.45318 * 5 4 3 36 36 H 1.09005 * 109.46553 * 57.45690 * 5 4 3 37 37 H 1.08995 * 109.46918 * 177.45017 * 5 4 3 38 38 H 1.08997 * 110.72378 * 35.25501 * 8 6 3 39 39 H 1.09006 * 110.72375 * 271.97834 * 8 6 3 40 40 H 1.09006 * 109.88047 * 218.39024 * 9 8 6 41 41 H 1.09001 * 110.01598 * 97.29947 * 9 8 6 42 42 H 0.96997 * 120.00028 * 0.02562 * 15 13 11 43 43 H 1.08999 * 109.47010 * 60.00783 * 16 15 13 44 44 H 1.08993 * 109.47318 * 300.00225 * 16 15 13 45 45 H 1.08999 * 109.46791 * 60.00513 * 17 16 15 46 46 H 1.08998 * 109.47055 * 300.00593 * 17 16 15 47 47 H 1.08993 * 109.47222 * 300.00022 * 18 17 16 48 48 H 1.08999 * 109.47121 * 60.00589 * 18 17 16 49 49 H 0.96996 * 119.99759 * 180.02562 * 22 21 19 50 50 H 1.09005 * 110.36750 * 142.74159 * 27 10 9 51 51 H 1.09000 * 110.36879 * 265.05814 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0670 1.2533 5 6 1.7546 3.5812 1.0507 6 6 3.4686 1.4311 -0.2382 7 1 3.8488 2.4465 -0.1256 8 6 4.2180 0.4492 0.7007 9 6 5.4987 0.1199 -0.0949 10 7 5.2167 0.3982 -1.5107 11 6 6.0896 0.2574 -2.5279 12 8 5.7466 0.5180 -3.6623 13 6 7.4801 -0.2198 -2.2587 14 8 7.8230 -0.4809 -1.1244 15 7 8.3528 -0.3611 -3.2760 16 6 9.7160 -0.8283 -3.0120 17 6 10.4944 -0.8994 -4.3274 18 6 11.9179 -1.3880 -4.0518 19 6 12.6843 -1.4585 -5.3474 20 1 12.2044 -1.1822 -6.2745 21 6 13.9987 -1.8750 -5.3489 22 7 14.6678 -1.9361 -6.4796 23 14 14.8292 -2.3523 -3.7453 24 1 14.6295 -3.8027 -3.4970 25 1 16.2826 -2.0608 -3.8345 26 1 14.2356 -1.5728 -2.6293 27 6 3.8230 0.8630 -1.6326 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.6555 1.7952 1.5440 34 1 2.3657 1.7660 2.0368 35 1 2.7795 3.8582 0.8041 36 1 1.0925 3.8761 0.2365 37 1 1.4516 4.0878 1.9669 38 1 3.6265 -0.4506 0.8691 39 1 4.4649 0.9323 1.6462 40 1 5.7538 -0.9322 0.0324 41 1 6.3226 0.7451 0.2489 42 1 8.0785 -0.1527 -4.1828 43 1 9.6791 -1.8183 -2.5574 44 1 10.2126 -0.1350 -2.3333 45 1 10.5313 0.0908 -4.7816 46 1 9.9978 -1.5924 -5.0065 47 1 12.4146 -0.6952 -3.3726 48 1 11.8806 -2.3782 -3.5977 49 1 15.5923 -2.2294 -6.4807 50 1 3.7480 1.6427 -2.3907 51 1 3.1652 0.0294 -1.8784 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343151799.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:45 Heat of formation + Delta-G solvation = -64.575055 kcal Electronic energy + Delta-G solvation = -27611.728281 eV Core-core repulsion = 23739.222119 eV Total energy + Delta-G solvation = -3872.506162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.04145 -39.75079 -38.33906 -36.74175 -35.62520 -33.35978 -32.32795 -31.79201 -31.47783 -29.88578 -28.30329 -27.49644 -25.07847 -23.68019 -23.26780 -22.88915 -21.78704 -20.71384 -19.84341 -19.57299 -17.89914 -17.30529 -16.85030 -16.76106 -16.26785 -15.96689 -15.52944 -15.25301 -15.07511 -14.77396 -14.47495 -14.06061 -13.95711 -13.90640 -13.63837 -13.30867 -13.07205 -12.87023 -12.76016 -12.73180 -12.33049 -12.10725 -12.08242 -11.98068 -11.95583 -11.85215 -11.61440 -11.47002 -11.11988 -11.05732 -10.93737 -10.91481 -10.17199 -9.97748 -9.78649 -9.48551 -9.24594 -9.15500 -8.99655 -8.78081 -8.56748 -6.07106 -4.06107 1.37214 2.12507 3.14608 3.25325 3.29760 3.37399 3.40779 3.42029 4.08212 4.16886 4.31134 4.42719 4.43055 4.48544 4.60528 4.70749 4.78028 4.88454 4.96028 4.99831 5.10512 5.17981 5.24342 5.26507 5.36342 5.42722 5.43298 5.48409 5.52680 5.53413 5.56015 5.57398 5.65533 5.75196 5.79758 5.84033 5.92293 6.15943 6.38276 6.51992 6.54555 6.55645 6.73330 6.90223 7.18961 7.23736 7.32743 7.63482 7.74192 7.98999 8.49335 8.97056 9.54639 11.06101 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.033099 B = 0.001821 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.733118 B =15370.393347 C =15616.512554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.039 3.961 3 N -0.525 5.525 4 C 0.046 3.954 5 C -0.148 4.148 6 C 0.072 3.928 7 H 0.103 0.897 8 C -0.173 4.173 9 C 0.113 3.887 10 N -0.595 5.595 11 C 0.523 3.477 12 O -0.519 6.519 13 C 0.504 3.496 14 O -0.523 6.523 15 N -0.692 5.692 16 C 0.113 3.887 17 C -0.116 4.116 18 C -0.010 4.010 19 C -0.523 4.523 20 H 0.073 0.927 21 C 0.066 3.934 22 N -0.902 5.902 23 Si 0.880 3.120 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.265 1.265 27 C 0.112 3.888 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.040 0.960 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.412 0.588 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.019 0.981 48 H 0.015 0.985 49 H 0.263 0.737 50 H 0.088 0.912 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.079 7.183 18.296 35.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.088 4.088 3 N -0.248 5.248 4 C -0.082 4.082 5 C -0.206 4.206 6 C -0.038 4.038 7 H 0.121 0.879 8 C -0.213 4.213 9 C -0.010 4.010 10 N -0.330 5.330 11 C 0.306 3.694 12 O -0.394 6.394 13 C 0.284 3.716 14 O -0.400 6.400 15 N -0.344 5.344 16 C -0.009 4.009 17 C -0.154 4.154 18 C -0.048 4.048 19 C -0.561 4.561 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.541 5.541 23 Si 0.707 3.293 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.189 1.189 27 C -0.011 4.011 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.249 0.751 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.038 0.962 48 H 0.033 0.967 49 H 0.073 0.927 50 H 0.107 0.893 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -30.002 7.326 17.960 35.726 hybrid contribution 0.921 -0.678 1.016 1.530 sum -29.081 6.647 18.977 35.356 Atomic orbital electron populations 1.21826 0.94582 1.01731 1.02548 1.22263 0.96169 0.89066 1.01344 1.62088 1.11592 1.15965 1.35173 1.22163 1.01166 0.95045 0.89782 1.21778 1.02284 0.94586 1.01932 1.22887 0.87406 0.99699 0.93813 0.87944 1.23449 0.97146 1.01073 0.99614 1.22094 0.97246 1.02701 0.78988 1.48170 1.12307 1.64512 1.08013 1.20010 0.85985 0.79246 0.84189 1.90777 1.78475 1.49320 1.20831 1.19892 0.85940 0.79981 0.85824 1.90737 1.78480 1.49460 1.21297 1.46008 1.12888 1.64789 1.10671 1.21837 0.79132 0.99820 1.00156 1.21747 0.97560 1.02056 0.93989 1.19501 0.91217 0.95975 0.98124 1.21093 0.96550 1.45106 0.93348 0.90924 1.25033 0.97294 0.94966 0.96194 1.69916 1.10495 1.47812 1.25850 0.86773 0.78626 0.79275 0.84584 1.20253 1.21353 1.18931 1.22272 0.81193 0.99986 0.97629 0.92621 0.91689 0.92169 0.90201 0.94177 0.90282 0.94323 0.92756 0.91738 0.92328 0.89848 0.89733 0.90232 0.90042 0.75147 0.91146 0.91141 0.91772 0.91803 0.96247 0.96685 0.92682 0.89323 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.88 37.16 0.37 -0.33 16 2 C 0.04 0.21 4.66 -3.82 -0.02 0.19 16 3 N -0.52 -3.15 4.47 -224.22 -1.00 -4.15 16 4 C 0.05 0.23 5.49 -3.82 -0.02 0.21 16 5 C -0.15 -0.72 9.99 37.16 0.37 -0.35 16 6 C 0.07 0.48 2.96 -65.69 -0.19 0.28 16 7 H 0.10 0.70 6.73 -51.93 -0.35 0.35 16 8 C -0.17 -1.09 5.59 -24.90 -0.14 -1.23 16 9 C 0.11 1.03 5.49 -3.06 -0.02 1.01 16 10 N -0.59 -6.47 3.33 -171.16 -0.57 -7.04 16 11 C 0.52 7.12 7.91 -11.59 -0.09 7.03 16 12 O -0.52 -8.06 16.73 5.50 0.09 -7.97 16 13 C 0.50 7.38 7.86 -11.58 -0.09 7.29 16 14 O -0.52 -8.34 14.12 5.50 0.08 -8.26 16 15 N -0.69 -10.07 5.55 -60.73 -0.34 -10.41 16 16 C 0.11 1.81 5.67 -4.04 -0.02 1.79 16 17 C -0.12 -2.15 5.27 -26.73 -0.14 -2.29 16 18 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 19 C -0.52 -14.71 9.66 -34.44 -0.33 -15.04 16 20 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 21 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 22 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 23 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 27 C 0.11 0.98 6.44 -2.65 -0.02 0.96 16 28 H 0.05 0.24 6.25 -51.93 -0.32 -0.09 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.48 5.85 -51.93 -0.30 0.18 16 32 H 0.04 0.21 6.44 -51.93 -0.33 -0.13 16 33 H 0.08 0.35 5.89 -51.93 -0.31 0.05 16 34 H 0.04 0.19 7.22 -51.93 -0.38 -0.19 16 35 H 0.05 0.29 6.88 -51.93 -0.36 -0.07 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.08 0.49 5.65 -51.93 -0.29 0.20 16 39 H 0.08 0.45 7.94 -51.93 -0.41 0.04 16 40 H 0.08 0.79 7.70 -51.93 -0.40 0.39 16 41 H 0.08 0.81 7.57 -51.93 -0.39 0.42 16 42 H 0.41 5.58 7.94 -40.82 -0.32 5.26 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 48 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 49 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 50 H 0.09 0.86 8.04 -51.93 -0.42 0.44 16 51 H 0.08 0.66 5.87 -51.93 -0.30 0.35 16 LS Contribution 394.93 15.07 5.95 5.95 Total: -1.00 -32.09 394.93 -8.87 -40.95 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -8.63 Total: -0.06 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -0.56 Total: 1.01 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: -1.13 Total: -48.53 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.17 Total: -16.23 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.09 -8.87 -40.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343151799.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.620 kcal (2) G-P(sol) polarization free energy of solvation -32.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds