Wall clock time and date at job start Fri Apr 10 2020 18:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46908 * 109.47320 * 2 1 4 4 C 1.46899 * 110.99860 * 66.04344 * 3 2 1 5 5 C 1.53003 * 109.46934 * 199.05230 * 4 3 2 6 6 C 1.46901 * 110.99970 * 190.00159 * 3 2 1 7 7 H 1.09006 * 110.88262 * 186.44848 * 6 3 2 8 8 C 1.55153 * 111.00350 * 310.33079 * 6 3 2 9 9 C 1.54324 * 102.94075 * 153.61830 * 8 6 3 10 10 N 1.47022 * 107.27352 * 337.80398 * 9 8 6 11 11 C 1.34765 * 125.65113 * 178.90543 * 10 9 8 12 12 O 1.21348 * 120.00475 * 180.02562 * 11 10 9 13 13 C 1.49458 * 120.00142 * 0.02650 * 11 10 9 14 14 O 1.21345 * 119.99542 * 0.02562 * 13 11 10 15 15 N 1.34777 * 119.99952 * 179.97438 * 13 11 10 16 16 C 1.46500 * 119.99518 * 179.97438 * 15 13 11 17 17 C 1.53007 * 109.46838 * 180.02562 * 16 15 13 18 18 C 1.53001 * 109.46824 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.46689 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00450 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99830 * 179.97438 * 19 18 17 22 22 N 1.31523 * 120.00021 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00172 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47150 * 89.99564 * 23 21 19 25 25 H 1.48503 * 109.47192 * 209.99956 * 23 21 19 26 26 H 1.48506 * 109.47086 * 329.99731 * 23 21 19 27 27 C 1.47426 * 108.69822 * 359.17188 * 10 9 8 28 28 H 1.09000 * 109.47129 * 300.00055 * 1 2 3 29 29 H 1.08999 * 109.46668 * 59.99864 * 1 2 3 30 30 H 1.08996 * 109.47061 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47129 * 239.99945 * 2 1 3 32 32 H 1.09000 * 109.47431 * 119.99609 * 2 1 3 33 33 H 1.08992 * 109.47217 * 319.05707 * 4 3 2 34 34 H 1.09004 * 109.46688 * 79.05864 * 4 3 2 35 35 H 1.08996 * 109.47216 * 297.45318 * 5 4 3 36 36 H 1.09005 * 109.46553 * 57.45690 * 5 4 3 37 37 H 1.08995 * 109.46918 * 177.45017 * 5 4 3 38 38 H 1.08997 * 110.72378 * 35.25501 * 8 6 3 39 39 H 1.09006 * 110.72375 * 271.97834 * 8 6 3 40 40 H 1.09006 * 109.88047 * 218.39024 * 9 8 6 41 41 H 1.09001 * 110.01598 * 97.29947 * 9 8 6 42 42 H 0.96997 * 120.00028 * 0.02562 * 15 13 11 43 43 H 1.08999 * 109.47010 * 60.00783 * 16 15 13 44 44 H 1.08993 * 109.47318 * 300.00225 * 16 15 13 45 45 H 1.08999 * 109.46791 * 60.00513 * 17 16 15 46 46 H 1.08998 * 109.47055 * 300.00593 * 17 16 15 47 47 H 1.08993 * 109.47222 * 300.00022 * 18 17 16 48 48 H 1.08999 * 109.47121 * 60.00589 * 18 17 16 49 49 H 0.96996 * 119.99759 * 180.02562 * 22 21 19 50 50 H 1.09005 * 110.36750 * 142.74159 * 27 10 9 51 51 H 1.09000 * 110.36879 * 265.05814 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0670 1.2533 5 6 1.7546 3.5812 1.0507 6 6 3.4686 1.4311 -0.2382 7 1 3.8488 2.4465 -0.1256 8 6 4.2180 0.4492 0.7007 9 6 5.4987 0.1199 -0.0949 10 7 5.2167 0.3982 -1.5107 11 6 6.0896 0.2574 -2.5279 12 8 5.7466 0.5180 -3.6623 13 6 7.4801 -0.2198 -2.2587 14 8 7.8230 -0.4809 -1.1244 15 7 8.3528 -0.3611 -3.2760 16 6 9.7160 -0.8283 -3.0120 17 6 10.4944 -0.8994 -4.3274 18 6 11.9179 -1.3880 -4.0518 19 6 12.6843 -1.4585 -5.3474 20 1 12.2044 -1.1822 -6.2745 21 6 13.9987 -1.8750 -5.3489 22 7 14.6678 -1.9361 -6.4796 23 14 14.8292 -2.3523 -3.7453 24 1 14.6295 -3.8027 -3.4970 25 1 16.2826 -2.0608 -3.8345 26 1 14.2356 -1.5728 -2.6293 27 6 3.8230 0.8630 -1.6326 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.6555 1.7952 1.5440 34 1 2.3657 1.7660 2.0368 35 1 2.7795 3.8582 0.8041 36 1 1.0925 3.8761 0.2365 37 1 1.4516 4.0878 1.9669 38 1 3.6265 -0.4506 0.8691 39 1 4.4649 0.9323 1.6462 40 1 5.7538 -0.9322 0.0324 41 1 6.3226 0.7451 0.2489 42 1 8.0785 -0.1527 -4.1828 43 1 9.6791 -1.8183 -2.5574 44 1 10.2126 -0.1350 -2.3333 45 1 10.5313 0.0908 -4.7816 46 1 9.9978 -1.5924 -5.0065 47 1 12.4146 -0.6952 -3.3726 48 1 11.8806 -2.3782 -3.5977 49 1 15.5923 -2.2294 -6.4807 50 1 3.7480 1.6427 -2.3907 51 1 3.1652 0.0294 -1.8784 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343151799.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:44 Heat of formation + Delta-G solvation = -87.236590 kcal Electronic energy + Delta-G solvation = -27612.710959 eV Core-core repulsion = 23739.222119 eV Total energy + Delta-G solvation = -3873.488840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.99989 -40.56753 -39.36446 -37.58360 -36.93629 -35.18497 -33.32387 -32.71119 -32.47708 -30.52435 -29.45860 -28.63295 -26.23954 -24.59006 -24.06428 -23.47906 -22.87900 -22.29068 -20.80647 -20.33825 -19.08824 -18.65428 -18.18763 -17.79692 -17.02090 -16.89255 -16.65636 -16.22156 -16.11517 -15.69537 -15.48229 -15.35482 -15.00394 -14.78255 -14.57172 -14.37508 -14.18679 -13.84785 -13.80553 -13.62678 -13.39103 -13.18727 -12.89511 -12.75937 -12.71317 -12.63781 -12.55427 -12.38142 -12.34159 -12.00307 -11.90799 -11.78321 -11.61562 -11.53843 -11.36990 -11.34258 -10.75816 -10.69551 -10.32792 -9.92158 -9.24929 -8.28733 -6.33364 0.25655 1.12167 1.38110 1.39762 1.51565 2.03772 2.35139 2.37206 2.81181 3.06906 3.21598 3.49367 3.62012 3.82579 3.99810 4.00498 4.10600 4.16203 4.20999 4.30924 4.37508 4.46638 4.52350 4.54782 4.64962 4.69720 4.73655 4.77765 4.80835 4.84378 4.85288 4.89941 5.00160 5.01235 5.03326 5.13744 5.16281 5.17177 5.19607 5.39110 5.43393 5.45429 5.54530 5.64603 5.90471 6.05720 6.13425 6.16303 6.27612 6.55687 6.74961 6.85055 7.31344 8.87838 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.033099 B = 0.001821 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.733118 B =15370.393347 C =15616.512554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.038 3.962 3 N -0.531 5.531 4 C 0.046 3.954 5 C -0.146 4.146 6 C 0.081 3.919 7 H 0.103 0.897 8 C -0.160 4.160 9 C 0.110 3.890 10 N -0.588 5.588 11 C 0.521 3.479 12 O -0.545 6.545 13 C 0.506 3.494 14 O -0.535 6.535 15 N -0.689 5.689 16 C 0.126 3.874 17 C -0.105 4.105 18 C -0.010 4.010 19 C -0.534 4.534 20 H 0.034 0.966 21 C 0.002 3.998 22 N -0.952 5.952 23 Si 0.951 3.049 24 H -0.267 1.267 25 H -0.286 1.286 26 H -0.243 1.243 27 C 0.109 3.891 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.417 0.583 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.026 0.974 48 H 0.024 0.976 49 H 0.266 0.734 50 H 0.078 0.922 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.425 7.133 21.384 38.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.089 4.089 3 N -0.255 5.255 4 C -0.081 4.081 5 C -0.204 4.204 6 C -0.029 4.029 7 H 0.121 0.879 8 C -0.199 4.199 9 C -0.012 4.012 10 N -0.322 5.322 11 C 0.304 3.696 12 O -0.423 6.423 13 C 0.286 3.714 14 O -0.413 6.413 15 N -0.342 5.342 16 C 0.004 3.996 17 C -0.143 4.143 18 C -0.048 4.048 19 C -0.572 4.572 20 H 0.052 0.948 21 C -0.194 4.194 22 N -0.592 5.592 23 Si 0.774 3.226 24 H -0.192 1.192 25 H -0.212 1.212 26 H -0.167 1.167 27 C -0.013 4.013 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.254 0.746 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.044 0.956 48 H 0.043 0.957 49 H 0.075 0.925 50 H 0.096 0.904 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -31.396 7.286 21.080 38.512 hybrid contribution 1.255 -0.634 -0.006 1.406 sum -30.141 6.652 21.074 37.374 Atomic orbital electron populations 1.21795 0.93999 1.02148 1.02386 1.22284 0.96644 0.88703 1.01285 1.62087 1.10840 1.16483 1.36082 1.22207 1.01745 0.94847 0.89292 1.21762 1.01756 0.94733 1.02136 1.22762 0.88117 0.99631 0.92353 0.87891 1.23402 0.95489 1.01427 0.99604 1.22201 0.98667 1.02170 0.78192 1.48276 1.12681 1.62945 1.08284 1.19791 0.85874 0.79519 0.84410 1.90766 1.78796 1.50906 1.21808 1.20053 0.86318 0.79551 0.85467 1.90728 1.78834 1.50030 1.21708 1.45892 1.12409 1.64762 1.11108 1.21545 0.79559 1.00201 0.98336 1.21530 0.95566 1.01758 0.95465 1.19453 0.93071 0.96799 0.95486 1.21482 0.97132 1.44338 0.94241 0.94796 1.26041 0.98186 0.95043 1.00171 1.70075 1.11063 1.49468 1.28619 0.85647 0.77313 0.79542 0.80090 1.19175 1.21173 1.16674 1.22411 0.80015 0.99966 0.98925 0.92001 0.92594 0.91502 0.90964 0.93442 0.89533 0.93693 0.93267 0.92590 0.91287 0.88985 0.88056 0.90867 0.90680 0.74579 0.90814 0.90874 0.91882 0.91880 0.95608 0.95732 0.92531 0.90381 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.88 71.98 0.71 -0.39 16 2 C 0.04 0.34 4.66 86.30 0.40 0.74 16 3 N -0.53 -5.39 4.47 -863.30 -3.86 -9.24 16 4 C 0.05 0.35 5.49 86.30 0.47 0.83 16 5 C -0.15 -1.16 9.99 71.98 0.72 -0.44 16 6 C 0.08 0.95 2.96 46.23 0.14 1.08 16 7 H 0.10 1.23 6.73 -2.38 -0.02 1.21 16 8 C -0.16 -1.64 5.59 31.78 0.18 -1.46 16 9 C 0.11 1.85 5.49 86.73 0.48 2.33 16 10 N -0.59 -12.29 3.33 -813.80 -2.71 -14.99 16 11 C 0.52 13.94 7.91 87.27 0.69 14.63 16 12 O -0.54 -16.89 16.73 -3.24 -0.05 -16.94 16 13 C 0.51 14.35 7.86 87.27 0.69 15.03 16 14 O -0.54 -16.38 14.12 -3.23 -0.05 -16.43 16 15 N -0.69 -19.39 5.55 -464.40 -2.58 -21.97 16 16 C 0.13 3.85 5.67 86.38 0.49 4.34 16 17 C -0.11 -3.82 5.27 30.60 0.16 -3.66 16 18 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 19 C -0.53 -30.44 9.66 25.60 0.25 -30.19 16 20 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 21 C 0.00 0.13 5.47 84.65 0.46 0.60 16 22 N -0.95 -59.77 13.96 21.45 0.30 -59.47 16 23 Si 0.95 43.88 27.47 68.60 1.88 45.77 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 25 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 26 H -0.24 -10.32 6.54 99.48 0.65 -9.67 16 27 C 0.11 1.81 6.44 86.78 0.56 2.37 16 28 H 0.06 0.39 6.25 -2.39 -0.01 0.38 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.07 0.76 5.85 -2.39 -0.01 0.75 16 32 H 0.05 0.36 6.44 -2.39 -0.02 0.35 16 33 H 0.09 0.55 5.89 -2.39 -0.01 0.54 16 34 H 0.04 0.30 7.22 -2.39 -0.02 0.29 16 35 H 0.05 0.44 6.88 -2.39 -0.02 0.43 16 36 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 37 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.09 0.83 5.65 -2.39 -0.01 0.82 16 39 H 0.10 0.77 7.94 -2.38 -0.02 0.75 16 40 H 0.07 1.36 7.70 -2.38 -0.02 1.34 16 41 H 0.07 1.39 7.57 -2.39 -0.02 1.37 16 42 H 0.42 11.05 7.94 -92.71 -0.74 10.31 16 43 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 45 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.03 1.13 7.20 -2.39 -0.02 1.11 16 48 H 0.02 1.06 7.57 -2.39 -0.02 1.04 16 49 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 50 H 0.08 1.49 8.04 -2.38 -0.02 1.47 16 51 H 0.08 1.33 5.87 -2.39 -0.01 1.31 16 Total: -1.00 -69.37 394.93 -0.41 -69.78 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.13 Total: 18.04 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 6.52 Total: 5.45 kcal Atomic # 7 Polarization: -96.83 SS G_CDS: -8.84 Total: -105.67 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -0.10 Total: -33.37 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.77 kcal Total: -69.37 -0.41 -69.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343151799.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.460 kcal (2) G-P(sol) polarization free energy of solvation -69.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds