Wall clock time and date at job start Fri Apr 10 2020 18:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 110.99841 * 2 1 4 4 C 1.46899 * 111.00230 * 123.95143 * 2 1 3 5 5 H 1.09002 * 109.47043 * 55.00375 * 4 2 1 6 6 C 1.52997 * 109.47254 * 295.00304 * 4 2 1 7 7 C 1.52992 * 109.47482 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47106 * 60.00162 * 7 6 4 9 9 C 1.53002 * 109.47128 * 300.00123 * 8 7 6 10 10 H 1.08998 * 109.47844 * 180.02562 * 9 8 7 11 11 N 1.46506 * 109.47040 * 300.00330 * 9 8 7 12 12 C 1.34777 * 119.99711 * 274.99806 * 11 9 8 13 13 O 1.21352 * 119.99855 * 359.97438 * 12 11 9 14 14 C 1.49446 * 120.00171 * 180.02562 * 12 11 9 15 15 O 1.21352 * 119.99974 * 359.97438 * 14 12 11 16 16 N 1.34773 * 120.00293 * 179.97438 * 14 12 11 17 17 C 1.46496 * 120.00380 * 179.97438 * 16 14 12 18 18 C 1.53000 * 109.47346 * 180.02562 * 17 16 14 19 19 C 1.53006 * 109.46992 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.46956 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99860 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99919 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00010 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99974 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47172 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47080 * 119.99864 * 24 22 20 27 27 H 1.48491 * 109.47236 * 240.00017 * 24 22 20 28 28 C 1.52997 * 109.46978 * 59.99726 * 9 8 7 29 29 H 1.08999 * 109.47628 * 296.04720 * 1 2 3 30 30 H 1.09002 * 109.47436 * 56.04932 * 1 2 3 31 31 H 1.09003 * 109.46674 * 176.04771 * 1 2 3 32 32 H 1.08992 * 109.47139 * 183.95276 * 3 2 1 33 33 H 1.08998 * 109.46871 * 303.95426 * 3 2 1 34 34 H 1.09004 * 109.46908 * 63.95125 * 3 2 1 35 35 H 1.09002 * 109.47153 * 300.00004 * 6 4 2 36 36 H 1.08998 * 109.47533 * 59.99633 * 6 4 2 37 37 H 1.09002 * 109.47103 * 300.00247 * 7 6 4 38 38 H 1.08996 * 109.47747 * 179.97438 * 7 6 4 39 39 H 1.08996 * 109.47407 * 180.02562 * 8 7 6 40 40 H 1.09002 * 109.47596 * 60.00070 * 8 7 6 41 41 H 0.96992 * 120.00385 * 94.99608 * 11 9 8 42 42 H 0.97004 * 120.00197 * 0.02562 * 16 14 12 43 43 H 1.09001 * 109.47039 * 300.00514 * 17 16 14 44 44 H 1.08997 * 109.47088 * 60.00248 * 17 16 14 45 45 H 1.08993 * 109.47089 * 300.00217 * 18 17 16 46 46 H 1.09003 * 109.47292 * 60.00619 * 18 17 16 47 47 H 1.09001 * 109.47252 * 300.00301 * 19 18 17 48 48 H 1.08997 * 109.47229 * 60.00251 * 19 18 17 49 49 H 0.96998 * 119.99618 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.47140 * 180.02562 * 28 9 8 51 51 H 1.09002 * 109.47497 * 60.00450 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 1 1.5754 -1.7717 1.1240 6 6 1.6091 -0.0695 2.4439 7 6 2.1568 -0.8674 3.6288 8 6 3.6812 -0.9505 3.5267 9 6 4.0676 -1.6470 2.2203 10 1 5.1536 -1.7066 2.1477 11 7 3.5025 -2.9985 2.2018 12 6 4.1659 -4.0143 2.7888 13 8 5.2314 -3.8095 3.3323 14 6 3.5898 -5.3932 2.7695 15 8 2.5245 -5.5981 2.2256 16 7 4.2533 -6.4090 3.3561 17 6 3.6884 -7.7606 3.3376 18 6 4.6326 -8.7181 4.0672 19 6 4.0422 -10.1295 4.0485 20 6 4.9720 -11.0726 4.7676 21 1 5.8918 -10.7022 5.1957 22 6 4.6484 -12.4082 4.8792 23 7 3.5286 -12.8593 4.3575 24 14 5.8013 -13.5773 5.7700 25 1 6.9848 -12.8268 6.2613 26 1 5.0917 -14.1906 6.9214 27 1 6.2435 -14.6437 4.8362 28 6 3.5198 -0.8489 1.0355 29 1 -0.3634 0.4512 0.9232 30 1 -0.3634 0.5739 -0.8525 31 1 -0.3633 -1.0253 -0.0708 32 1 3.0826 1.3433 -0.0708 33 1 1.5897 1.9163 -0.8524 34 1 1.7042 1.8724 0.9233 35 1 2.0291 0.9363 2.4575 36 1 0.5231 -0.0106 2.5170 37 1 1.7364 -1.8730 3.6150 38 1 1.8820 -0.3711 4.5594 39 1 4.0714 -1.5194 4.3705 40 1 4.1016 0.0551 3.5404 41 1 2.6511 -3.1623 1.7671 42 1 5.1047 -6.2452 3.7912 43 1 2.7192 -7.7561 3.8365 44 1 3.5642 -8.0884 2.3056 45 1 5.6019 -8.7226 3.5687 46 1 4.7564 -8.3902 5.0994 47 1 3.0730 -10.1246 4.5472 48 1 3.9181 -10.4578 3.0165 49 1 3.3008 -13.7988 4.4363 50 1 3.7947 -1.3453 0.1048 51 1 3.9402 0.1567 1.0492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343315943.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:54 Heat of formation + Delta-G solvation = -87.335744 kcal Electronic energy + Delta-G solvation = -27783.024431 eV Core-core repulsion = 23909.531291 eV Total energy + Delta-G solvation = -3873.493140 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.04847 -39.86103 -38.39458 -36.54918 -35.61337 -33.67940 -33.21673 -31.24167 -30.82129 -29.76120 -28.05718 -27.20791 -25.02192 -24.61365 -23.06473 -22.62998 -21.30315 -20.80602 -20.33816 -19.25856 -18.44972 -16.83212 -16.59197 -16.28431 -16.11680 -15.84116 -15.44462 -15.12744 -15.04086 -14.90856 -14.72728 -14.43958 -14.24815 -13.82895 -13.51839 -13.39546 -13.05389 -12.77215 -12.55768 -12.34710 -12.31743 -12.13297 -12.03648 -11.88262 -11.79462 -11.62864 -11.50728 -11.07596 -10.97339 -10.93119 -10.76057 -10.60530 -10.58078 -9.90546 -9.77354 -9.45042 -9.36362 -9.11819 -8.97127 -8.70147 -8.38426 -6.02976 -4.05863 1.43926 2.36163 3.23995 3.30093 3.37695 3.41570 3.44186 3.68389 4.19869 4.25465 4.43055 4.44792 4.53550 4.62350 4.65805 4.74702 4.86981 4.95136 4.97340 5.07312 5.11804 5.16267 5.25921 5.30976 5.33109 5.45949 5.50272 5.57352 5.59834 5.61282 5.62251 5.69491 5.79144 5.84886 5.88390 6.08367 6.10960 6.27998 6.54298 6.57421 6.58507 6.69960 6.94316 6.95375 7.42107 7.61890 7.73322 7.74622 7.95601 8.06643 8.36869 9.00912 9.58562 11.08329 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.029740 B = 0.001834 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.253000 B =15263.377640 C =15715.600808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.539 5.539 3 C 0.015 3.985 4 C 0.080 3.920 5 H 0.083 0.917 6 C -0.153 4.153 7 C -0.116 4.116 8 C -0.132 4.132 9 C 0.146 3.854 10 H 0.096 0.904 11 N -0.697 5.697 12 C 0.510 3.490 13 O -0.521 6.521 14 C 0.499 3.501 15 O -0.527 6.527 16 N -0.691 5.691 17 C 0.114 3.886 18 C -0.123 4.123 19 C 0.024 3.976 20 C -0.522 4.522 21 H 0.057 0.943 22 C 0.056 3.944 23 N -0.894 5.894 24 Si 0.893 3.107 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 C -0.120 4.120 29 H 0.029 0.971 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.030 0.970 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.411 0.589 42 H 0.411 0.589 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.261 0.739 50 H 0.081 0.919 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.695 31.763 -6.898 32.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.261 5.261 3 C -0.133 4.133 4 C -0.028 4.028 5 H 0.101 0.899 6 C -0.192 4.192 7 C -0.154 4.154 8 C -0.171 4.171 9 C 0.042 3.958 10 H 0.114 0.886 11 N -0.352 5.352 12 C 0.290 3.710 13 O -0.396 6.396 14 C 0.278 3.722 15 O -0.404 6.404 16 N -0.343 5.343 17 C -0.008 4.008 18 C -0.161 4.161 19 C -0.014 4.014 20 C -0.560 4.560 21 H 0.075 0.925 22 C -0.145 4.145 23 N -0.533 5.533 24 Si 0.721 3.279 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.210 1.210 28 C -0.158 4.158 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.249 0.751 42 H 0.247 0.753 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.038 0.962 48 H 0.038 0.962 49 H 0.070 0.930 50 H 0.100 0.900 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.641 31.359 -7.378 32.420 hybrid contribution 0.196 -0.331 1.247 1.305 sum -3.445 31.027 -6.131 31.814 Atomic orbital electron populations 1.22431 0.87235 1.02606 1.00589 1.62237 1.08043 1.13929 1.41879 1.22494 1.01105 0.89080 1.00598 1.21764 0.95193 0.97850 0.88019 0.89850 1.22241 1.01100 1.00142 0.95756 1.21448 0.95453 1.00707 0.97816 1.21954 0.96307 1.00966 0.97825 1.21067 0.99335 0.80400 0.95035 0.88617 1.45910 1.25227 1.07524 1.56514 1.20347 0.84998 0.86288 0.79331 1.90754 1.21338 1.84563 1.42951 1.20051 0.85525 0.85938 0.80638 1.90759 1.21472 1.84364 1.43792 1.46070 1.24782 1.08728 1.54727 1.21839 0.98257 0.78741 1.02003 1.21927 0.97949 0.97286 0.98906 1.19041 0.96419 0.88254 0.97671 1.21243 1.06094 0.93131 1.35557 0.92507 1.25033 0.95321 0.98432 0.95717 1.69975 1.23196 1.14878 1.45238 0.86516 0.80956 0.80945 0.79462 1.19729 1.21010 1.20995 1.21907 0.94661 1.01049 0.98180 0.95212 0.91370 0.91134 0.91025 0.91526 0.95119 0.91416 0.91662 0.91597 0.91726 0.90930 0.90770 0.75148 0.75327 0.91131 0.91089 0.92420 0.92444 0.96198 0.96175 0.92981 0.90007 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.31 60.06 0.56 0.67 16 2 N -0.54 -3.56 5.01 -243.18 -1.22 -4.78 16 3 C 0.02 0.08 8.82 60.07 0.53 0.61 16 4 C 0.08 0.52 2.06 -67.71 -0.14 0.38 16 5 H 0.08 0.62 6.49 -51.93 -0.34 0.28 16 6 C -0.15 -0.92 4.51 -26.74 -0.12 -1.04 16 7 C -0.12 -0.80 5.77 -26.73 -0.15 -0.95 16 8 C -0.13 -0.96 5.60 -26.73 -0.15 -1.11 16 9 C 0.15 1.14 2.78 -67.93 -0.19 0.95 16 10 H 0.10 0.84 7.57 -51.93 -0.39 0.44 16 11 N -0.70 -6.82 4.23 -54.23 -0.23 -7.04 16 12 C 0.51 6.52 7.85 -11.59 -0.09 6.43 16 13 O -0.52 -7.54 16.14 5.49 0.09 -7.45 16 14 C 0.50 7.40 7.89 -11.59 -0.09 7.31 16 15 O -0.53 -8.89 16.48 5.49 0.09 -8.79 16 16 N -0.69 -10.35 5.55 -60.74 -0.34 -10.69 16 17 C 0.11 1.95 5.67 -4.04 -0.02 1.93 16 18 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 19 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 20 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 21 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 22 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 23 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 24 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 C -0.12 -0.75 4.68 -26.73 -0.13 -0.87 16 29 H 0.03 0.16 6.44 -51.93 -0.33 -0.17 16 30 H 0.07 0.36 8.12 -51.93 -0.42 -0.07 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.34 6.33 -51.93 -0.33 0.02 16 33 H 0.07 0.32 8.12 -51.93 -0.42 -0.10 16 34 H 0.03 0.15 6.28 -51.93 -0.33 -0.17 16 35 H 0.07 0.38 6.39 -51.93 -0.33 0.05 16 36 H 0.06 0.40 6.52 -51.93 -0.34 0.06 16 37 H 0.07 0.53 7.60 -51.93 -0.39 0.14 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.41 3.84 6.34 -40.82 -0.26 3.58 16 42 H 0.41 5.62 7.94 -40.82 -0.32 5.30 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 50 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.08 0.43 6.43 -51.93 -0.33 0.09 16 LS Contribution 397.49 15.07 5.99 5.99 Total: -1.00 -31.60 397.49 -9.32 -40.92 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -8.74 Total: 2.41 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -0.69 Total: -1.11 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -1.05 Total: -48.46 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.18 Total: -16.24 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.60 -9.32 -40.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343315943.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.416 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds