Wall clock time and date at job start Fri Apr 10 2020 18:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 110.99841 * 2 1 4 4 C 1.46899 * 111.00230 * 123.95143 * 2 1 3 5 5 H 1.09002 * 109.47043 * 55.00375 * 4 2 1 6 6 C 1.52997 * 109.47254 * 295.00304 * 4 2 1 7 7 C 1.52992 * 109.47482 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47106 * 60.00162 * 7 6 4 9 9 C 1.53002 * 109.47128 * 300.00123 * 8 7 6 10 10 H 1.08998 * 109.47844 * 180.02562 * 9 8 7 11 11 N 1.46506 * 109.47040 * 300.00330 * 9 8 7 12 12 C 1.34777 * 119.99711 * 274.99806 * 11 9 8 13 13 O 1.21352 * 119.99855 * 359.97438 * 12 11 9 14 14 C 1.49446 * 120.00171 * 180.02562 * 12 11 9 15 15 O 1.21352 * 119.99974 * 359.97438 * 14 12 11 16 16 N 1.34773 * 120.00293 * 179.97438 * 14 12 11 17 17 C 1.46496 * 120.00380 * 179.97438 * 16 14 12 18 18 C 1.53000 * 109.47346 * 180.02562 * 17 16 14 19 19 C 1.53006 * 109.46992 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.46956 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99860 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99919 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00010 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99974 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47172 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47080 * 119.99864 * 24 22 20 27 27 H 1.48491 * 109.47236 * 240.00017 * 24 22 20 28 28 C 1.52997 * 109.46978 * 59.99726 * 9 8 7 29 29 H 1.08999 * 109.47628 * 296.04720 * 1 2 3 30 30 H 1.09002 * 109.47436 * 56.04932 * 1 2 3 31 31 H 1.09003 * 109.46674 * 176.04771 * 1 2 3 32 32 H 1.08992 * 109.47139 * 183.95276 * 3 2 1 33 33 H 1.08998 * 109.46871 * 303.95426 * 3 2 1 34 34 H 1.09004 * 109.46908 * 63.95125 * 3 2 1 35 35 H 1.09002 * 109.47153 * 300.00004 * 6 4 2 36 36 H 1.08998 * 109.47533 * 59.99633 * 6 4 2 37 37 H 1.09002 * 109.47103 * 300.00247 * 7 6 4 38 38 H 1.08996 * 109.47747 * 179.97438 * 7 6 4 39 39 H 1.08996 * 109.47407 * 180.02562 * 8 7 6 40 40 H 1.09002 * 109.47596 * 60.00070 * 8 7 6 41 41 H 0.96992 * 120.00385 * 94.99608 * 11 9 8 42 42 H 0.97004 * 120.00197 * 0.02562 * 16 14 12 43 43 H 1.09001 * 109.47039 * 300.00514 * 17 16 14 44 44 H 1.08997 * 109.47088 * 60.00248 * 17 16 14 45 45 H 1.08993 * 109.47089 * 300.00217 * 18 17 16 46 46 H 1.09003 * 109.47292 * 60.00619 * 18 17 16 47 47 H 1.09001 * 109.47252 * 300.00301 * 19 18 17 48 48 H 1.08997 * 109.47229 * 60.00251 * 19 18 17 49 49 H 0.96998 * 119.99618 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.47140 * 180.02562 * 28 9 8 51 51 H 1.09002 * 109.47497 * 60.00450 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 1 1.5754 -1.7717 1.1240 6 6 1.6091 -0.0695 2.4439 7 6 2.1568 -0.8674 3.6288 8 6 3.6812 -0.9505 3.5267 9 6 4.0676 -1.6470 2.2203 10 1 5.1536 -1.7066 2.1477 11 7 3.5025 -2.9985 2.2018 12 6 4.1659 -4.0143 2.7888 13 8 5.2314 -3.8095 3.3323 14 6 3.5898 -5.3932 2.7695 15 8 2.5245 -5.5981 2.2256 16 7 4.2533 -6.4090 3.3561 17 6 3.6884 -7.7606 3.3376 18 6 4.6326 -8.7181 4.0672 19 6 4.0422 -10.1295 4.0485 20 6 4.9720 -11.0726 4.7676 21 1 5.8918 -10.7022 5.1957 22 6 4.6484 -12.4082 4.8792 23 7 3.5286 -12.8593 4.3575 24 14 5.8013 -13.5773 5.7700 25 1 6.9848 -12.8268 6.2613 26 1 5.0917 -14.1906 6.9214 27 1 6.2435 -14.6437 4.8362 28 6 3.5198 -0.8489 1.0355 29 1 -0.3634 0.4512 0.9232 30 1 -0.3634 0.5739 -0.8525 31 1 -0.3633 -1.0253 -0.0708 32 1 3.0826 1.3433 -0.0708 33 1 1.5897 1.9163 -0.8524 34 1 1.7042 1.8724 0.9233 35 1 2.0291 0.9363 2.4575 36 1 0.5231 -0.0106 2.5170 37 1 1.7364 -1.8730 3.6150 38 1 1.8820 -0.3711 4.5594 39 1 4.0714 -1.5194 4.3705 40 1 4.1016 0.0551 3.5404 41 1 2.6511 -3.1623 1.7671 42 1 5.1047 -6.2452 3.7912 43 1 2.7192 -7.7561 3.8365 44 1 3.5642 -8.0884 2.3056 45 1 5.6019 -8.7226 3.5687 46 1 4.7564 -8.3902 5.0994 47 1 3.0730 -10.1246 4.5472 48 1 3.9181 -10.4578 3.0165 49 1 3.3008 -13.7988 4.4363 50 1 3.7947 -1.3453 0.1048 51 1 3.9402 0.1567 1.0492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343315943.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:54 Heat of formation + Delta-G solvation = -109.749532 kcal Electronic energy + Delta-G solvation = -27783.996365 eV Core-core repulsion = 23909.531291 eV Total energy + Delta-G solvation = -3874.465074 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.97476 -40.71103 -39.42551 -37.34847 -36.98043 -35.28452 -34.28628 -33.03924 -31.42980 -30.36036 -28.96031 -28.45954 -26.30252 -25.27662 -24.37547 -23.46986 -22.37337 -21.93190 -21.51021 -19.92105 -19.61006 -18.50744 -17.84240 -17.26485 -17.05234 -16.71943 -16.55501 -16.31570 -16.11845 -15.90577 -15.56899 -15.35561 -15.15479 -14.99366 -14.55697 -14.28726 -13.96907 -13.77930 -13.69283 -13.51211 -13.33639 -13.10028 -12.86969 -12.81207 -12.78639 -12.60469 -12.55740 -12.44184 -12.37384 -12.04196 -11.70797 -11.63533 -11.56050 -11.52663 -11.22041 -11.16969 -10.69160 -10.55670 -10.33523 -10.24459 -9.16714 -8.19783 -6.30609 0.31323 1.29773 1.41668 1.42245 1.55259 2.11111 2.41471 2.61911 2.97790 3.14184 3.40765 3.65627 3.71894 3.89370 4.08049 4.08242 4.10315 4.17742 4.27400 4.37714 4.44929 4.46966 4.52144 4.57023 4.62484 4.70252 4.73651 4.78066 4.86656 4.91184 4.98735 5.01916 5.05465 5.08144 5.14609 5.15078 5.18742 5.22872 5.28997 5.30411 5.41617 5.51654 5.70455 5.84325 5.90231 6.11114 6.13968 6.22766 6.32516 6.70378 6.86547 6.91440 7.38795 8.92313 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.029740 B = 0.001834 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.253000 B =15263.377640 C =15715.600808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.551 5.551 3 C 0.014 3.986 4 C 0.082 3.918 5 H 0.070 0.930 6 C -0.145 4.145 7 C -0.114 4.114 8 C -0.128 4.128 9 C 0.145 3.855 10 H 0.091 0.909 11 N -0.682 5.682 12 C 0.516 3.484 13 O -0.538 6.538 14 C 0.499 3.501 15 O -0.549 6.549 16 N -0.686 5.686 17 C 0.127 3.873 18 C -0.106 4.106 19 C 0.024 3.976 20 C -0.541 4.541 21 H 0.064 0.936 22 C -0.002 4.002 23 N -0.933 5.933 24 Si 0.966 3.034 25 H -0.261 1.261 26 H -0.280 1.280 27 H -0.280 1.280 28 C -0.111 4.111 29 H 0.033 0.967 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.036 0.964 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.094 0.906 41 H 0.414 0.586 42 H 0.419 0.581 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.067 0.933 47 H -0.004 1.004 48 H -0.004 1.004 49 H 0.263 0.737 50 H 0.076 0.924 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.611 33.615 -6.628 34.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.273 5.273 3 C -0.133 4.133 4 C -0.027 4.027 5 H 0.088 0.912 6 C -0.184 4.184 7 C -0.152 4.152 8 C -0.166 4.166 9 C 0.041 3.959 10 H 0.109 0.891 11 N -0.336 5.336 12 C 0.296 3.704 13 O -0.415 6.415 14 C 0.280 3.720 15 O -0.427 6.427 16 N -0.339 5.339 17 C 0.004 3.996 18 C -0.144 4.144 19 C -0.014 4.014 20 C -0.579 4.579 21 H 0.082 0.918 22 C -0.200 4.200 23 N -0.573 5.573 24 Si 0.791 3.209 25 H -0.184 1.184 26 H -0.205 1.205 27 H -0.205 1.205 28 C -0.149 4.149 29 H 0.052 0.948 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.113 0.887 41 H 0.252 0.748 42 H 0.257 0.743 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.015 0.985 48 H 0.015 0.985 49 H 0.072 0.928 50 H 0.094 0.906 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.553 33.255 -7.115 34.104 hybrid contribution -0.202 -0.851 1.117 1.419 sum -2.756 32.404 -5.998 33.070 Atomic orbital electron populations 1.22437 0.87012 1.02356 1.01083 1.62232 1.08406 1.14842 1.41868 1.22538 1.01438 0.88303 1.01057 1.21708 0.95182 0.97389 0.88437 0.91155 1.22161 1.01024 1.00323 0.94861 1.21417 0.95086 1.00077 0.98609 1.21920 0.96558 1.01617 0.96489 1.21249 0.99053 0.79295 0.96269 0.89105 1.45957 1.24877 1.07788 1.54954 1.19905 0.84884 0.85793 0.79824 1.90752 1.22035 1.84558 1.44175 1.20432 0.85090 0.86729 0.79792 1.90749 1.22459 1.84866 1.44654 1.45882 1.25118 1.07911 1.54949 1.21470 0.97420 0.79579 1.01121 1.21640 0.98278 0.94433 1.00014 1.18943 0.95401 0.91433 0.95573 1.21710 1.06671 0.93974 1.35583 0.91755 1.25991 0.96969 1.00482 0.96568 1.70106 1.25131 1.15438 1.46658 0.85383 0.78965 0.78470 0.78121 1.18447 1.20536 1.20530 1.21844 0.94505 1.01554 0.96948 0.94822 0.90739 0.91828 0.90445 0.91155 0.94595 0.90355 0.91780 0.93187 0.91168 0.92825 0.88714 0.74768 0.74345 0.91795 0.91774 0.91443 0.91458 0.98529 0.98521 0.92796 0.90560 0.88061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.31 127.69 1.19 1.39 16 2 N -0.55 -6.42 5.01 -923.28 -4.62 -11.05 16 3 C 0.01 0.12 8.82 127.69 1.13 1.24 16 4 C 0.08 0.94 2.06 44.92 0.09 1.03 16 5 H 0.07 0.99 6.49 -2.39 -0.02 0.98 16 6 C -0.14 -1.46 4.51 30.59 0.14 -1.33 16 7 C -0.11 -1.41 5.77 30.59 0.18 -1.23 16 8 C -0.13 -1.66 5.60 30.60 0.17 -1.49 16 9 C 0.15 2.07 2.78 44.99 0.13 2.19 16 10 H 0.09 1.46 7.57 -2.39 -0.02 1.44 16 11 N -0.68 -12.89 4.23 -443.86 -1.88 -14.76 16 12 C 0.52 12.91 7.85 87.27 0.69 13.59 16 13 O -0.54 -15.15 16.14 -3.25 -0.05 -15.20 16 14 C 0.50 14.66 7.89 87.27 0.69 15.35 16 15 O -0.55 -18.54 16.48 -3.25 -0.05 -18.59 16 16 N -0.69 -20.20 5.55 -464.43 -2.58 -22.78 16 17 C 0.13 4.38 5.67 86.38 0.49 4.87 16 18 C -0.11 -4.09 5.27 30.60 0.16 -3.93 16 19 C 0.02 1.25 4.97 29.85 0.15 1.39 16 20 C -0.54 -30.26 9.11 25.60 0.23 -30.03 16 21 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 22 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 23 N -0.93 -56.63 13.29 21.45 0.28 -56.34 16 24 Si 0.97 44.00 29.54 68.60 2.03 46.02 16 25 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 27 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 28 C -0.11 -1.18 4.68 30.59 0.14 -1.03 16 29 H 0.03 0.33 6.44 -2.39 -0.02 0.31 16 30 H 0.07 0.68 8.12 -2.39 -0.02 0.66 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 0.54 6.33 -2.39 -0.02 0.53 16 33 H 0.07 0.53 8.12 -2.39 -0.02 0.51 16 34 H 0.04 0.26 6.28 -2.38 -0.01 0.25 16 35 H 0.08 0.66 6.39 -2.39 -0.02 0.64 16 36 H 0.06 0.69 6.52 -2.39 -0.02 0.67 16 37 H 0.05 0.78 7.60 -2.39 -0.02 0.76 16 38 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.41 7.55 6.34 -92.71 -0.59 6.97 16 42 H 0.42 11.05 7.94 -92.70 -0.74 10.31 16 43 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 46 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 47 H 0.00 -0.21 8.14 -2.39 -0.02 -0.22 16 48 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 49 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 50 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.10 0.75 6.43 -2.39 -0.02 0.74 16 Total: -1.00 -67.54 397.49 -1.23 -68.78 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -0.39 Total: 21.57 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 6.03 Total: 2.36 kcal Atomic # 7 Polarization: -96.14 SS G_CDS: -8.79 Total: -104.93 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.11 Total: -33.79 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -67.54 -1.23 -68.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343315943.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.974 kcal (2) G-P(sol) polarization free energy of solvation -67.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds