Wall clock time and date at job start Fri Apr 10 2020 18:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00183 * 2 1 4 4 C 1.52996 * 109.47258 * 89.99897 * 3 2 1 5 5 C 1.52999 * 109.47194 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.47426 * 179.97438 * 5 4 3 7 7 C 1.48536 * 110.99674 * 52.60377 * 6 5 4 8 8 C 1.54939 * 103.22584 * 159.72001 * 7 6 5 9 9 C 1.54591 * 102.92204 * 322.58835 * 8 7 6 10 10 C 1.47903 * 111.00301 * 169.99970 * 6 5 4 11 11 C 1.34779 * 119.99897 * 179.97438 * 2 1 3 12 12 O 1.21346 * 120.00099 * 185.35163 * 11 2 1 13 13 C 1.49453 * 119.99883 * 5.35233 * 11 2 1 14 14 O 1.21354 * 119.99887 * 5.96771 * 13 11 2 15 15 N 1.34775 * 120.00064 * 185.97003 * 13 11 2 16 16 C 1.46497 * 119.99872 * 180.02562 * 15 13 11 17 17 C 1.53006 * 109.47079 * 180.02562 * 16 15 13 18 18 C 1.52995 * 109.47357 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.47205 * 179.97438 * 18 17 16 20 20 H 1.07996 * 119.99951 * 359.97438 * 19 18 17 21 21 C 1.37881 * 120.00040 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99771 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00028 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47400 * 90.00139 * 23 21 19 25 25 H 1.48500 * 109.47154 * 210.00493 * 23 21 19 26 26 H 1.48505 * 109.46935 * 329.99974 * 23 21 19 27 27 H 1.09003 * 109.47166 * 95.25610 * 1 2 3 28 28 H 1.08997 * 109.47214 * 215.25910 * 1 2 3 29 29 H 1.09005 * 109.47033 * 335.25826 * 1 2 3 30 30 H 1.09004 * 109.47025 * 209.99571 * 3 2 1 31 31 H 1.09004 * 109.47251 * 329.99496 * 3 2 1 32 32 H 1.09003 * 109.47273 * 299.99486 * 4 3 2 33 33 H 1.08995 * 109.47565 * 60.00202 * 4 3 2 34 34 H 1.08997 * 109.47519 * 300.00303 * 5 4 3 35 35 H 1.09009 * 109.46966 * 60.00145 * 5 4 3 36 36 H 1.09001 * 110.66832 * 278.15554 * 7 6 5 37 37 H 1.08998 * 110.66554 * 41.29078 * 7 6 5 38 38 H 1.08996 * 110.72392 * 204.22961 * 8 7 6 39 39 H 1.09003 * 110.72197 * 80.94513 * 8 7 6 40 40 H 1.08996 * 110.31016 * 263.03939 * 9 8 7 41 41 H 1.09008 * 110.30665 * 140.87183 * 9 8 7 42 42 H 1.08994 * 109.91425 * 333.51491 * 10 6 5 43 43 H 1.09004 * 109.91365 * 94.60974 * 10 6 5 44 44 H 0.97002 * 119.99906 * 359.97438 * 15 13 11 45 45 H 1.09004 * 109.47275 * 299.99457 * 16 15 13 46 46 H 1.09003 * 109.47549 * 59.99955 * 16 15 13 47 47 H 1.09004 * 109.46608 * 299.99846 * 17 16 15 48 48 H 1.09003 * 109.46983 * 59.99588 * 17 16 15 49 49 H 1.09004 * 109.46983 * 299.99429 * 18 17 16 50 50 H 1.08996 * 109.47244 * 59.99154 * 18 17 16 51 51 H 0.96998 * 119.99627 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4424 5 6 3.2181 3.0350 1.4424 6 7 3.4624 3.4595 2.8274 7 6 4.1074 2.3746 3.6106 8 6 4.7485 3.1303 4.8017 9 6 5.2439 4.4427 4.1521 10 6 4.4000 4.6025 2.8740 11 6 2.1389 -1.1672 0.0005 12 8 3.3484 -1.1695 0.0985 13 6 1.3964 -2.4587 -0.1196 14 8 0.2006 -2.4542 -0.3262 15 7 2.0550 -3.6284 0.0015 16 6 1.3273 -4.8943 -0.1169 17 6 2.3014 -6.0610 0.0595 18 6 1.5416 -7.3831 -0.0647 19 6 2.5012 -8.5321 0.1084 20 1 3.5483 -8.3387 0.2885 21 6 2.0423 -9.8304 0.0367 22 7 0.7672 -10.0659 -0.1831 23 14 3.2316 -11.2546 0.2520 24 1 3.3074 -11.6235 1.6884 25 1 2.7549 -12.4207 -0.5341 26 1 4.5782 -10.8517 -0.2273 27 1 -0.3634 -0.0941 -1.0234 28 1 -0.3633 -0.8391 0.5932 29 1 -0.3633 0.9334 0.4301 30 1 3.1500 1.1383 -0.5138 31 1 1.6085 2.0284 -0.5139 32 1 1.5001 1.8409 1.9563 33 1 3.0416 0.9508 1.9563 34 1 4.1705 2.9043 0.9287 35 1 2.6294 3.7949 0.9284 36 1 3.3634 1.6605 3.9637 37 1 4.8717 1.8736 3.0167 38 1 5.5841 2.5640 5.2129 39 1 4.0054 3.3376 5.5718 40 1 6.3014 4.3642 3.8998 41 1 5.0759 5.2844 4.8241 42 1 5.0473 4.5877 1.9972 43 1 3.8426 5.5387 2.9081 44 1 3.0109 -3.6320 0.1662 45 1 0.5577 -4.9445 0.6535 46 1 0.8613 -4.9551 -1.1004 47 1 3.0713 -6.0110 -0.7106 48 1 2.7670 -6.0000 1.0432 49 1 0.7715 -7.4333 0.7051 50 1 1.0763 -7.4437 -1.0485 51 1 0.4443 -10.9792 -0.2331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343341279.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:06 Heat of formation + Delta-G solvation = -76.165882 kcal Electronic energy + Delta-G solvation = -27062.409762 eV Core-core repulsion = 23189.400984 eV Total energy + Delta-G solvation = -3873.008778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.82722 -39.42730 -38.56192 -36.58945 -35.49291 -33.95090 -33.29659 -31.25140 -30.70633 -29.27098 -27.43996 -27.06386 -26.00915 -23.96904 -22.91434 -21.87448 -21.20401 -20.80192 -20.67682 -19.57019 -17.76067 -17.19277 -16.56501 -16.40110 -16.31073 -16.14655 -15.53550 -15.39477 -14.98451 -14.74492 -14.45993 -14.36602 -13.83275 -13.81792 -13.45235 -13.30081 -13.14954 -12.79488 -12.65187 -12.31856 -12.24838 -11.90703 -11.87357 -11.80408 -11.75429 -11.58395 -11.49376 -11.40999 -11.04277 -10.93311 -10.91875 -10.76851 -10.60752 -9.91122 -9.68255 -9.30328 -9.13350 -9.11587 -8.90321 -8.83863 -8.38674 -6.03512 -4.06491 1.41663 2.26503 3.18403 3.30466 3.36837 3.39586 3.43608 3.59703 4.20862 4.28254 4.37452 4.44136 4.51789 4.58664 4.72478 4.83059 4.88402 4.96551 5.00887 5.10615 5.22755 5.23983 5.27311 5.32474 5.38414 5.43533 5.45565 5.57023 5.58634 5.61944 5.68217 5.71488 5.72076 5.77603 5.84681 6.07007 6.11678 6.29891 6.45521 6.53075 6.61490 6.69093 6.83147 6.94265 7.31037 7.60771 7.69620 7.72409 7.94809 8.05454 8.36109 8.99950 9.57860 11.07716 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.001800 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.164472 B =15548.639617 C =16758.004381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.590 5.590 3 C 0.116 3.884 4 C -0.136 4.136 5 C 0.050 3.950 6 N -0.518 5.518 7 C 0.032 3.968 8 C -0.125 4.125 9 C -0.132 4.132 10 C 0.034 3.966 11 C 0.506 3.494 12 O -0.522 6.522 13 C 0.499 3.501 14 O -0.521 6.521 15 N -0.692 5.692 16 C 0.114 3.886 17 C -0.123 4.123 18 C 0.024 3.976 19 C -0.523 4.523 20 H 0.056 0.944 21 C 0.057 3.943 22 N -0.894 5.894 23 Si 0.894 3.106 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.038 0.962 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.044 0.956 43 H 0.078 0.922 44 H 0.410 0.590 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.057 0.943 48 H 0.057 0.943 49 H 0.020 0.980 50 H 0.020 0.980 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.367 31.596 4.837 32.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.324 5.324 3 C -0.007 4.007 4 C -0.175 4.175 5 C -0.078 4.078 6 N -0.242 5.242 7 C -0.096 4.096 8 C -0.163 4.163 9 C -0.170 4.170 10 C -0.093 4.093 11 C 0.289 3.711 12 O -0.397 6.397 13 C 0.279 3.721 14 O -0.398 6.398 15 N -0.343 5.343 16 C -0.008 4.008 17 C -0.161 4.161 18 C -0.013 4.013 19 C -0.561 4.561 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.533 5.533 23 Si 0.721 3.279 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 H 0.082 0.918 28 H 0.113 0.887 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.097 0.903 44 H 0.246 0.754 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.076 0.924 48 H 0.075 0.925 49 H 0.038 0.962 50 H 0.038 0.962 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.501 31.574 4.907 32.144 hybrid contribution 1.725 -1.041 -0.264 2.032 sum 5.226 30.533 4.643 31.323 Atomic orbital electron populations 1.22178 0.77361 1.03413 1.03458 1.47685 1.08334 1.05062 1.71295 1.21531 0.97912 0.84182 0.97096 1.22015 1.01667 0.96684 0.97134 1.22214 0.99257 0.96812 0.89559 1.64819 1.42028 1.05705 1.11697 1.23269 0.97455 0.94310 0.94518 1.22495 1.00357 0.95764 0.97730 1.22399 0.99307 0.98533 0.96757 1.22878 0.93741 0.95371 0.97355 1.20401 0.87489 0.85391 0.77819 1.90744 1.13739 1.87242 1.48008 1.19981 0.87497 0.85243 0.79344 1.90726 1.14189 1.87193 1.47701 1.46086 1.13342 1.05560 1.69355 1.21837 0.95833 0.80780 1.02321 1.21929 0.97982 0.95003 1.01168 1.19033 0.95519 0.89121 0.97664 1.21202 0.94733 0.90909 1.49289 0.92579 1.25028 0.95156 0.99042 0.95227 1.69965 1.13468 1.20377 1.49448 0.86570 0.81224 0.81951 0.78105 1.20654 1.21201 1.19881 0.91794 0.88748 0.91543 0.89728 0.89833 0.90665 0.91000 0.94341 0.90411 0.89852 0.93437 0.90970 0.90697 0.91516 0.90980 0.93743 0.90333 0.75400 0.91103 0.91111 0.92449 0.92460 0.96192 0.96182 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.72 9.23 59.85 0.55 1.27 16 2 N -0.59 -6.24 2.87 -182.08 -0.52 -6.76 16 3 C 0.12 0.95 5.34 -4.05 -0.02 0.92 16 4 C -0.14 -1.08 5.20 -26.73 -0.14 -1.22 16 5 C 0.05 0.36 5.03 -3.82 -0.02 0.34 16 6 N -0.52 -4.08 5.40 -230.45 -1.24 -5.33 16 7 C 0.03 0.25 5.10 -1.90 -0.01 0.24 16 8 C -0.13 -0.81 7.06 -24.87 -0.18 -0.99 16 9 C -0.13 -0.77 6.93 -25.38 -0.18 -0.94 16 10 C 0.03 0.23 6.70 -2.76 -0.02 0.21 16 11 C 0.51 6.79 7.72 -11.58 -0.09 6.70 16 12 O -0.52 -7.84 16.13 5.50 0.09 -7.75 16 13 C 0.50 7.43 7.70 -11.58 -0.09 7.34 16 14 O -0.52 -8.46 13.38 5.49 0.07 -8.39 16 15 N -0.69 -10.37 5.55 -60.72 -0.34 -10.71 16 16 C 0.11 1.95 5.67 -4.04 -0.02 1.92 16 17 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 18 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 19 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 20 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 23 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 27 H 0.06 0.60 8.11 -51.93 -0.42 0.17 16 28 H 0.09 1.04 5.95 -51.93 -0.31 0.73 16 29 H 0.07 0.44 8.03 -51.93 -0.42 0.02 16 30 H 0.08 0.77 7.50 -51.93 -0.39 0.38 16 31 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.71 6.79 -51.93 -0.35 0.36 16 34 H 0.04 0.28 7.81 -51.93 -0.41 -0.12 16 35 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 36 H 0.08 0.69 7.67 -51.93 -0.40 0.29 16 37 H 0.05 0.40 8.00 -51.93 -0.42 -0.02 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 42 H 0.04 0.28 7.57 -51.93 -0.39 -0.11 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.41 5.67 7.96 -40.82 -0.32 5.34 16 45 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 46 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 51 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 409.32 15.07 6.17 6.17 Total: -1.00 -31.65 409.32 -10.24 -41.89 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -9.28 Total: -0.12 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -0.90 Total: 0.40 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -1.37 Total: -48.65 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: 0.16 Total: -16.14 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.65 -10.24 -41.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343341279.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.278 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds