Wall clock time and date at job start Fri Apr 10 2020 18:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00183 * 2 1 4 4 C 1.52996 * 109.47258 * 89.99897 * 3 2 1 5 5 C 1.52999 * 109.47194 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.47426 * 179.97438 * 5 4 3 7 7 C 1.48536 * 110.99674 * 52.60377 * 6 5 4 8 8 C 1.54939 * 103.22584 * 159.72001 * 7 6 5 9 9 C 1.54591 * 102.92204 * 322.58835 * 8 7 6 10 10 C 1.47903 * 111.00301 * 169.99970 * 6 5 4 11 11 C 1.34779 * 119.99897 * 179.97438 * 2 1 3 12 12 O 1.21346 * 120.00099 * 185.35163 * 11 2 1 13 13 C 1.49453 * 119.99883 * 5.35233 * 11 2 1 14 14 O 1.21354 * 119.99887 * 5.96771 * 13 11 2 15 15 N 1.34775 * 120.00064 * 185.97003 * 13 11 2 16 16 C 1.46497 * 119.99872 * 180.02562 * 15 13 11 17 17 C 1.53006 * 109.47079 * 180.02562 * 16 15 13 18 18 C 1.52995 * 109.47357 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.47205 * 179.97438 * 18 17 16 20 20 H 1.07996 * 119.99951 * 359.97438 * 19 18 17 21 21 C 1.37881 * 120.00040 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99771 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00028 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47400 * 90.00139 * 23 21 19 25 25 H 1.48500 * 109.47154 * 210.00493 * 23 21 19 26 26 H 1.48505 * 109.46935 * 329.99974 * 23 21 19 27 27 H 1.09003 * 109.47166 * 95.25610 * 1 2 3 28 28 H 1.08997 * 109.47214 * 215.25910 * 1 2 3 29 29 H 1.09005 * 109.47033 * 335.25826 * 1 2 3 30 30 H 1.09004 * 109.47025 * 209.99571 * 3 2 1 31 31 H 1.09004 * 109.47251 * 329.99496 * 3 2 1 32 32 H 1.09003 * 109.47273 * 299.99486 * 4 3 2 33 33 H 1.08995 * 109.47565 * 60.00202 * 4 3 2 34 34 H 1.08997 * 109.47519 * 300.00303 * 5 4 3 35 35 H 1.09009 * 109.46966 * 60.00145 * 5 4 3 36 36 H 1.09001 * 110.66832 * 278.15554 * 7 6 5 37 37 H 1.08998 * 110.66554 * 41.29078 * 7 6 5 38 38 H 1.08996 * 110.72392 * 204.22961 * 8 7 6 39 39 H 1.09003 * 110.72197 * 80.94513 * 8 7 6 40 40 H 1.08996 * 110.31016 * 263.03939 * 9 8 7 41 41 H 1.09008 * 110.30665 * 140.87183 * 9 8 7 42 42 H 1.08994 * 109.91425 * 333.51491 * 10 6 5 43 43 H 1.09004 * 109.91365 * 94.60974 * 10 6 5 44 44 H 0.97002 * 119.99906 * 359.97438 * 15 13 11 45 45 H 1.09004 * 109.47275 * 299.99457 * 16 15 13 46 46 H 1.09003 * 109.47549 * 59.99955 * 16 15 13 47 47 H 1.09004 * 109.46608 * 299.99846 * 17 16 15 48 48 H 1.09003 * 109.46983 * 59.99588 * 17 16 15 49 49 H 1.09004 * 109.46983 * 299.99429 * 18 17 16 50 50 H 1.08996 * 109.47244 * 59.99154 * 18 17 16 51 51 H 0.96998 * 119.99627 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4424 5 6 3.2181 3.0350 1.4424 6 7 3.4624 3.4595 2.8274 7 6 4.1074 2.3746 3.6106 8 6 4.7485 3.1303 4.8017 9 6 5.2439 4.4427 4.1521 10 6 4.4000 4.6025 2.8740 11 6 2.1389 -1.1672 0.0005 12 8 3.3484 -1.1695 0.0985 13 6 1.3964 -2.4587 -0.1196 14 8 0.2006 -2.4542 -0.3262 15 7 2.0550 -3.6284 0.0015 16 6 1.3273 -4.8943 -0.1169 17 6 2.3014 -6.0610 0.0595 18 6 1.5416 -7.3831 -0.0647 19 6 2.5012 -8.5321 0.1084 20 1 3.5483 -8.3387 0.2885 21 6 2.0423 -9.8304 0.0367 22 7 0.7672 -10.0659 -0.1831 23 14 3.2316 -11.2546 0.2520 24 1 3.3074 -11.6235 1.6884 25 1 2.7549 -12.4207 -0.5341 26 1 4.5782 -10.8517 -0.2273 27 1 -0.3634 -0.0941 -1.0234 28 1 -0.3633 -0.8391 0.5932 29 1 -0.3633 0.9334 0.4301 30 1 3.1500 1.1383 -0.5138 31 1 1.6085 2.0284 -0.5139 32 1 1.5001 1.8409 1.9563 33 1 3.0416 0.9508 1.9563 34 1 4.1705 2.9043 0.9287 35 1 2.6294 3.7949 0.9284 36 1 3.3634 1.6605 3.9637 37 1 4.8717 1.8736 3.0167 38 1 5.5841 2.5640 5.2129 39 1 4.0054 3.3376 5.5718 40 1 6.3014 4.3642 3.8998 41 1 5.0759 5.2844 4.8241 42 1 5.0473 4.5877 1.9972 43 1 3.8426 5.5387 2.9081 44 1 3.0109 -3.6320 0.1662 45 1 0.5577 -4.9445 0.6535 46 1 0.8613 -4.9551 -1.1004 47 1 3.0713 -6.0110 -0.7106 48 1 2.7670 -6.0000 1.0432 49 1 0.7715 -7.4333 0.7051 50 1 1.0763 -7.4437 -1.0485 51 1 0.4443 -10.9792 -0.2331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343341279.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:05 Heat of formation + Delta-G solvation = -97.453756 kcal Electronic energy + Delta-G solvation = -27063.332874 eV Core-core repulsion = 23189.400984 eV Total energy + Delta-G solvation = -3873.931890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.90960 -40.07265 -39.61794 -37.62139 -36.83705 -35.24551 -34.54149 -33.04300 -31.34023 -29.81076 -29.03462 -27.90498 -27.08643 -25.36099 -23.93506 -22.89307 -22.37759 -21.72527 -21.33236 -20.73542 -18.87259 -18.49918 -18.12113 -17.39363 -17.09106 -16.98715 -16.69385 -16.40352 -16.25806 -16.07896 -15.69546 -15.17482 -14.98792 -14.81003 -14.29542 -14.16573 -14.04129 -13.88615 -13.79183 -13.61051 -13.38823 -13.34698 -12.91667 -12.76528 -12.58029 -12.49126 -12.43527 -12.38635 -12.29657 -12.16931 -12.02191 -11.70644 -11.65200 -11.54676 -11.43050 -11.23195 -10.55103 -10.51117 -10.30511 -9.88026 -9.42211 -8.19857 -6.30740 0.29405 1.24307 1.41763 1.42535 1.53645 2.05792 2.38735 2.44957 3.01144 3.13980 3.27533 3.68364 3.76245 3.90900 4.01666 4.07666 4.15663 4.17431 4.18597 4.31963 4.34833 4.39557 4.51746 4.55713 4.62048 4.64473 4.69813 4.76297 4.83748 4.88287 4.90844 4.94219 5.00299 5.02193 5.05728 5.12866 5.14522 5.18818 5.25818 5.29763 5.36382 5.51049 5.70116 5.83885 5.84870 5.90125 6.06024 6.16853 6.23765 6.62696 6.85948 6.88917 7.38536 8.91921 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.001800 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.164472 B =15548.639617 C =16758.004381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.581 5.581 3 C 0.114 3.886 4 C -0.125 4.125 5 C 0.054 3.946 6 N -0.529 5.529 7 C 0.031 3.969 8 C -0.125 4.125 9 C -0.130 4.130 10 C 0.032 3.968 11 C 0.506 3.494 12 O -0.543 6.543 13 C 0.498 3.502 14 O -0.536 6.536 15 N -0.689 5.689 16 C 0.129 3.871 17 C -0.106 4.106 18 C 0.025 3.975 19 C -0.543 4.543 20 H 0.063 0.937 21 C -0.001 4.001 22 N -0.932 5.932 23 Si 0.965 3.035 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.263 1.263 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.035 0.965 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.046 0.954 43 H 0.085 0.915 44 H 0.417 0.583 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.066 0.934 49 H -0.003 1.003 50 H -0.003 1.003 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.345 33.335 5.041 34.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.313 5.313 3 C -0.007 4.007 4 C -0.164 4.164 5 C -0.075 4.075 6 N -0.253 5.253 7 C -0.097 4.097 8 C -0.163 4.163 9 C -0.168 4.168 10 C -0.096 4.096 11 C 0.288 3.712 12 O -0.421 6.421 13 C 0.279 3.721 14 O -0.414 6.414 15 N -0.341 5.341 16 C 0.006 3.994 17 C -0.144 4.144 18 C -0.013 4.013 19 C -0.581 4.581 20 H 0.082 0.918 21 C -0.199 4.199 22 N -0.572 5.572 23 Si 0.790 3.210 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.187 1.187 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.094 0.906 31 H 0.135 0.865 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.065 0.935 43 H 0.103 0.897 44 H 0.254 0.746 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.015 0.985 50 H 0.015 0.985 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.481 33.359 5.116 34.045 hybrid contribution 1.352 -1.509 -0.328 2.052 sum 5.832 31.850 4.788 32.732 Atomic orbital electron populations 1.22240 0.76315 1.04403 1.03462 1.47822 1.09073 1.04977 1.69408 1.21739 0.97962 0.83567 0.97465 1.21884 1.01395 0.96519 0.96626 1.22204 0.99208 0.96643 0.89433 1.64832 1.42529 1.05965 1.12016 1.23232 0.96998 0.94415 0.95031 1.22504 1.00477 0.96108 0.97222 1.22413 0.99456 0.98384 0.96564 1.22944 0.93765 0.95078 0.97796 1.20093 0.87130 0.85560 0.78372 1.90738 1.14337 1.87423 1.49562 1.20307 0.87369 0.85720 0.78666 1.90725 1.14893 1.87547 1.48218 1.45909 1.13601 1.04997 1.69601 1.21458 0.95093 0.81077 1.01770 1.21641 0.97793 0.92994 1.01977 1.18934 0.95126 0.91767 0.95461 1.21678 0.95505 0.92010 1.48940 0.91846 1.25977 0.96918 1.02153 0.94848 1.70098 1.15485 1.21108 1.50513 0.85443 0.79108 0.78166 0.78294 1.19848 1.20901 1.18724 0.91656 0.90672 0.88211 0.90575 0.86534 0.90496 0.93353 0.94671 0.88773 0.90793 0.94481 0.90426 0.90745 0.91022 0.90017 0.93534 0.89654 0.74579 0.91642 0.91784 0.91621 0.91527 0.98454 0.98492 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 9.23 127.77 1.18 2.46 16 2 N -0.58 -11.44 2.87 -848.35 -2.44 -13.88 16 3 C 0.11 1.64 5.34 86.38 0.46 2.10 16 4 C -0.13 -1.83 5.20 30.59 0.16 -1.67 16 5 C 0.05 0.68 5.03 86.30 0.43 1.11 16 6 N -0.53 -7.68 5.40 -883.00 -4.76 -12.44 16 7 C 0.03 0.48 5.10 86.65 0.44 0.92 16 8 C -0.13 -1.52 7.06 31.80 0.22 -1.29 16 9 C -0.13 -1.32 6.93 31.47 0.22 -1.10 16 10 C 0.03 0.37 6.70 86.44 0.58 0.95 16 11 C 0.51 13.28 7.72 87.27 0.67 13.95 16 12 O -0.54 -16.11 16.13 -3.23 -0.05 -16.17 16 13 C 0.50 14.68 7.70 87.27 0.67 15.35 16 14 O -0.54 -17.31 13.38 -3.26 -0.04 -17.36 16 15 N -0.69 -20.43 5.55 -464.39 -2.58 -23.01 16 16 C 0.13 4.41 5.67 86.38 0.49 4.90 16 17 C -0.11 -4.11 5.27 30.59 0.16 -3.95 16 18 C 0.02 1.27 4.97 29.85 0.15 1.42 16 19 C -0.54 -30.37 9.11 25.60 0.23 -30.13 16 20 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 21 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 22 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 23 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 27 H 0.06 1.10 8.11 -2.39 -0.02 1.08 16 28 H 0.07 1.59 5.95 -2.39 -0.01 1.58 16 29 H 0.10 1.00 8.03 -2.38 -0.02 0.98 16 30 H 0.08 1.28 7.50 -2.38 -0.02 1.26 16 31 H 0.12 0.95 8.07 -2.39 -0.02 0.93 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.05 0.95 6.79 -2.39 -0.02 0.93 16 34 H 0.04 0.47 7.81 -2.39 -0.02 0.45 16 35 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.07 1.24 7.67 -2.39 -0.02 1.22 16 37 H 0.04 0.63 8.00 -2.39 -0.02 0.61 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.08 0.67 8.14 -2.38 -0.02 0.66 16 42 H 0.05 0.51 7.57 -2.39 -0.02 0.50 16 43 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.42 11.28 7.96 -92.71 -0.74 10.54 16 45 H 0.07 2.31 8.14 -2.38 -0.02 2.30 16 46 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 48 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 49 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 50 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 51 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -68.22 409.32 -0.87 -69.08 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.16 Total: 18.48 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 6.54 Total: 5.42 kcal Atomic # 7 Polarization: -95.93 SS G_CDS: -9.49 Total: -105.42 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.10 Total: -33.52 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -68.22 -0.87 -69.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343341279.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.370 kcal (2) G-P(sol) polarization free energy of solvation -68.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds