Wall clock time and date at job start Fri Apr 10 2020 18:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86793 * 120.00017 * 2 1 4 4 H 1.48506 * 109.47333 * 269.99679 * 3 2 1 5 5 H 1.48499 * 109.47335 * 29.99786 * 3 2 1 6 6 H 1.48502 * 109.47116 * 150.00060 * 3 2 1 7 7 C 1.38949 * 119.99618 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00519 * 359.97438 * 7 2 1 9 9 N 1.37100 * 119.99588 * 180.02562 * 7 2 1 10 10 C 1.34781 * 119.99678 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00298 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99971 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47168 * 179.97438 * 12 10 9 14 14 C 1.34774 * 119.99955 * 180.02562 * 13 12 10 15 15 O 1.21586 * 120.00102 * 0.02562 * 14 13 12 16 16 C 1.47609 * 119.99957 * 180.02562 * 14 13 12 17 17 C 1.39752 * 120.07871 * 180.02562 * 16 14 13 18 18 C 1.38112 * 119.92771 * 180.25797 * 17 16 14 19 19 C 1.39538 * 119.99106 * 359.43573 * 18 17 16 20 20 C 1.38917 * 120.04890 * 0.56682 * 19 18 17 21 21 Cl 1.73604 * 119.89776 * 179.73823 * 20 19 18 22 22 C 1.37894 * 120.20096 * 359.71222 * 20 19 18 23 23 O 1.36379 * 108.59357 * 180.34059 * 19 18 17 24 24 C 1.44310 * 105.41619 * 342.30078 * 23 19 18 25 25 O 1.36542 * 131.41922 * 179.71891 * 18 17 16 26 26 H 0.97002 * 119.99335 * 0.02562 * 1 2 3 27 27 H 0.96992 * 120.00461 * 359.97438 * 9 7 2 28 28 H 1.09007 * 109.46994 * 60.00054 * 12 10 9 29 29 H 1.08999 * 109.47537 * 299.99992 * 12 10 9 30 30 H 0.96993 * 120.00082 * 359.97438 * 13 12 10 31 31 H 1.08002 * 120.03247 * 359.97124 * 17 16 14 32 32 H 1.07993 * 120.01104 * 179.97438 * 22 20 19 33 33 H 1.09005 * 111.01212 * 269.00836 * 24 23 19 34 34 H 1.08999 * 110.41386 * 146.09986 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 0.0000 11 8 3.4472 -3.4211 0.0000 12 6 5.5607 -2.3707 0.0000 13 7 6.0489 -3.7519 0.0006 14 6 7.3740 -3.9982 0.0012 15 8 8.1641 -3.0741 0.0018 16 6 7.8659 -5.3899 0.0013 17 6 9.2396 -5.6472 0.0025 18 6 9.6965 -6.9506 -0.0029 19 6 8.7868 -8.0086 0.0025 20 6 7.4215 -7.7522 0.0012 21 17 6.2931 -9.0715 0.0010 22 6 6.9598 -6.4528 0.0008 23 8 9.4834 -9.1811 0.0032 24 6 10.8174 -8.8349 -0.4246 25 8 10.9616 -7.4643 -0.0081 26 1 -0.4849 0.8401 -0.0004 27 1 3.8649 -0.3634 0.0004 28 1 5.9240 -1.8569 0.8900 29 1 5.9241 -1.8569 -0.8900 30 1 5.4186 -4.4891 0.0013 31 1 9.9430 -4.8277 0.0029 32 1 5.8978 -6.2569 -0.0006 33 1 10.9147 -8.9184 -1.5071 34 1 11.5526 -9.4662 0.0745 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343509040.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:12 Heat of formation + Delta-G solvation = -101.005462 kcal Electronic energy + Delta-G solvation = -23915.950241 eV Core-core repulsion = 19841.522462 eV Total energy + Delta-G solvation = -4074.427779 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 326.055 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.68252 -40.15721 -38.57832 -37.83486 -36.92316 -36.46510 -34.71033 -33.89725 -31.86187 -31.00914 -30.84542 -28.04727 -26.33707 -24.79054 -23.86576 -23.26924 -20.93047 -19.78695 -19.07841 -18.51697 -18.36886 -17.98012 -17.16583 -16.38818 -15.95050 -15.53097 -15.44100 -15.19603 -14.95273 -14.72183 -14.56726 -14.23061 -13.96072 -13.65863 -13.48774 -13.38384 -13.17573 -12.57272 -12.24093 -12.23142 -12.19016 -11.91990 -11.38263 -11.27712 -11.16034 -10.67631 -10.18766 -10.09169 -9.74222 -9.19105 -9.08500 -8.84145 -8.63614 -8.34914 -6.44456 -3.97356 0.18221 0.56970 1.63843 2.07549 2.46892 2.76349 2.96481 3.01314 3.09650 3.16697 3.32926 3.50749 3.95670 4.00192 4.14871 4.32206 4.42077 4.46933 4.55843 4.66492 4.80624 5.10061 5.13143 5.36038 5.47193 5.59477 5.68211 5.69498 5.72131 5.75074 6.35293 6.47326 7.38725 7.51301 7.94856 8.11926 8.40216 8.77474 9.25271 9.57619 10.67510 Molecular weight = 326.05amu Principal moments of inertia in cm(-1) A = 0.023926 B = 0.002533 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.010486 B =11049.564224 C =12191.078636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.574 5.574 10 C 0.436 3.564 11 O -0.579 6.579 12 C 0.106 3.894 13 N -0.698 5.698 14 C 0.564 3.436 15 O -0.537 6.537 16 C -0.106 4.106 17 C -0.037 4.037 18 C 0.036 3.964 19 C 0.064 3.936 20 C -0.026 4.026 21 Cl -0.041 7.041 22 C -0.064 4.064 23 O -0.295 6.295 24 C 0.211 3.789 25 O -0.300 6.300 26 H 0.276 0.724 27 H 0.375 0.625 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.412 0.588 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.091 0.909 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.710 -14.619 -1.143 25.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.439 4.439 8 H 0.140 0.860 9 N -0.211 5.211 10 C 0.222 3.778 11 O -0.463 6.463 12 C -0.022 4.022 13 N -0.353 5.353 14 C 0.350 3.650 15 O -0.416 6.416 16 C -0.110 4.110 17 C -0.057 4.057 18 C -0.008 4.008 19 C 0.017 3.983 20 C -0.054 4.054 21 Cl -0.012 7.012 22 C -0.083 4.083 23 O -0.210 6.210 24 C 0.100 3.900 25 O -0.216 6.216 26 H 0.087 0.913 27 H 0.208 0.792 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.252 0.748 31 H 0.175 0.825 32 H 0.176 0.824 33 H 0.109 0.891 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 20.653 -14.773 -1.038 25.414 hybrid contribution 0.283 0.700 -0.034 0.756 sum 20.936 -14.073 -1.073 25.249 Atomic orbital electron populations 1.69622 1.05729 1.27876 1.47888 1.25078 0.95544 0.98211 0.97063 0.86669 0.79915 0.83736 0.79155 1.19368 1.19961 1.19195 1.19445 0.78892 0.96832 1.48761 0.86010 1.42115 1.07740 1.06118 1.65163 1.19580 0.87925 0.84966 0.85347 1.90545 1.69119 1.30854 1.55813 1.21049 0.94044 0.83309 1.03779 1.45583 1.06551 1.09738 1.73400 1.17708 0.82446 0.87628 0.77264 1.90800 1.55370 1.45035 1.50371 1.19518 0.92421 0.93364 1.05662 1.20127 0.94928 0.93448 0.97189 1.19390 0.82830 0.93645 1.04964 1.19606 0.92033 0.84851 1.01772 1.19618 0.86299 0.90377 1.09104 1.98413 1.59724 1.46145 1.96876 1.21177 1.01353 0.88738 0.97051 1.87494 1.22723 1.27175 1.83619 1.25819 0.83391 0.80263 1.00564 1.87434 1.23735 1.25630 1.84835 0.91332 0.79199 0.89261 0.89244 0.74791 0.82487 0.82372 0.89141 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.49 13.96 55.50 0.77 -23.72 16 2 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 3 Si 0.88 18.54 27.74 -169.99 -4.71 13.82 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.11 6.52 56.52 0.37 -4.74 16 7 C -0.31 -8.35 10.16 -14.93 -0.15 -8.50 16 8 H 0.12 3.73 7.39 -52.49 -0.39 3.34 16 9 N -0.57 -12.85 5.09 -10.96 -0.06 -12.90 16 10 C 0.44 9.11 7.85 -10.99 -0.09 9.03 16 11 O -0.58 -13.95 15.24 5.54 0.08 -13.86 16 12 C 0.11 1.70 6.15 -5.20 -0.03 1.66 16 13 N -0.70 -10.30 5.48 -62.51 -0.34 -10.64 16 14 C 0.56 7.98 7.76 -12.44 -0.10 7.88 16 15 O -0.54 -8.89 16.34 5.29 0.09 -8.80 16 16 C -0.11 -1.24 5.87 -104.97 -0.62 -1.86 16 17 C -0.04 -0.41 9.60 -39.06 -0.38 -0.78 16 18 C 0.04 0.38 7.13 -39.14 -0.28 0.10 16 19 C 0.06 0.68 6.93 -38.85 -0.27 0.41 16 20 C -0.03 -0.29 6.32 -39.46 -0.25 -0.54 16 21 Cl -0.04 -0.43 28.95 -51.86 -1.50 -1.93 16 22 C -0.06 -0.69 9.30 -39.17 -0.36 -1.05 16 23 O -0.29 -2.82 11.42 -45.29 -0.52 -3.33 16 24 C 0.21 1.31 8.89 101.05 0.90 2.21 16 25 O -0.30 -2.81 11.41 -45.82 -0.52 -3.33 16 26 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.37 7.36 5.76 -40.82 -0.24 7.12 16 28 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 29 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.41 5.93 5.46 -40.82 -0.22 5.71 16 31 H 0.16 1.65 7.64 -52.49 -0.40 1.25 16 32 H 0.16 1.58 6.39 -52.49 -0.34 1.24 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.14 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 321.35 15.07 4.84 4.84 Total: -1.00 -32.29 321.35 -6.02 -38.32 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -2.44 Total: 11.87 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -1.72 Total: 9.67 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: 0.38 Total: -47.26 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.87 Total: -29.33 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -4.71 Total: 13.82 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.50 Total: -1.93 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.29 -6.02 -38.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343509040.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.689 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds