Wall clock time and date at job start Fri Apr 10 2020 18:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46977 * 2 1 4 4 C 1.46769 * 124.34989 * 269.94803 * 3 2 1 5 5 C 1.54475 * 105.47416 * 197.04157 * 4 3 2 6 6 H 1.08992 * 111.00586 * 92.72203 * 5 4 3 7 7 C 1.50708 * 110.96521 * 216.46614 * 5 4 3 8 8 O 1.21277 * 120.00237 * 353.83197 * 7 5 4 9 9 N 1.34778 * 119.99316 * 173.83214 * 7 5 4 10 10 C 1.46492 * 120.00644 * 0.02562 * 9 7 5 11 11 C 1.50707 * 109.46870 * 270.00152 * 10 9 7 12 12 H 1.07997 * 119.99954 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99761 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00022 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99773 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47249 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47369 * 119.99912 * 15 13 11 18 18 H 1.48501 * 109.47324 * 239.99986 * 15 13 11 19 19 C 1.46505 * 119.99417 * 180.02562 * 9 7 5 20 20 C 1.53001 * 109.47143 * 90.00033 * 19 9 7 21 21 C 1.52997 * 109.47019 * 179.97438 * 20 19 9 22 22 N 1.46905 * 109.47053 * 179.97438 * 21 20 19 23 23 C 1.46906 * 110.99995 * 66.04702 * 22 21 20 24 24 C 1.46897 * 111.00158 * 189.99961 * 22 21 20 25 25 C 1.54627 * 101.76630 * 334.58392 * 5 4 3 26 26 C 1.34422 * 124.35415 * 89.97688 * 3 2 1 27 27 O 1.21282 * 124.93942 * 359.53305 * 26 3 2 28 28 H 1.09004 * 109.47016 * 300.00620 * 1 2 3 29 29 H 1.08998 * 109.47192 * 59.99832 * 1 2 3 30 30 H 1.09000 * 109.47179 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46727 * 240.00029 * 2 1 3 32 32 H 1.08998 * 109.47441 * 119.99425 * 2 1 3 33 33 H 1.09006 * 110.24248 * 78.03757 * 4 3 2 34 34 H 1.09005 * 110.24474 * 316.04555 * 4 3 2 35 35 H 1.08999 * 109.47223 * 29.99584 * 10 9 7 36 36 H 1.08995 * 109.47520 * 150.00353 * 10 9 7 37 37 H 0.97005 * 119.99390 * 180.02562 * 14 13 11 38 38 H 1.09002 * 109.47355 * 330.00250 * 19 9 7 39 39 H 1.08994 * 109.47041 * 209.99996 * 19 9 7 40 40 H 1.09002 * 109.46818 * 59.99889 * 20 19 9 41 41 H 1.08994 * 109.47122 * 299.99913 * 20 19 9 42 42 H 1.09002 * 109.47313 * 60.00318 * 21 20 19 43 43 H 1.09005 * 109.47359 * 299.99535 * 21 20 19 44 44 H 1.08992 * 109.47459 * 183.95199 * 23 22 21 45 45 H 1.09004 * 109.47040 * 303.95350 * 23 22 21 46 46 H 1.09000 * 109.47033 * 63.95302 * 23 22 21 47 47 H 1.09001 * 109.47083 * 300.00451 * 24 22 21 48 48 H 1.08995 * 109.47328 * 59.99707 * 24 22 21 49 49 H 1.08993 * 109.47494 * 180.02562 * 24 22 21 50 50 H 1.08996 * 110.48957 * 143.47924 * 25 5 4 51 51 H 1.09009 * 110.48567 * 266.12123 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2954 2.1617 -1.2117 5 6 3.1755 3.3436 -0.7485 6 1 4.2343 3.1032 -0.8439 7 6 2.8393 4.5983 -1.5127 8 8 2.0547 4.5538 -2.4364 9 7 3.4107 5.7697 -1.1695 10 6 4.3589 5.8233 -0.0541 11 6 3.6135 6.1009 1.2260 12 1 2.5408 6.2253 1.2101 13 6 4.3010 6.1959 2.4173 14 7 5.6072 6.0439 2.4367 15 14 3.3772 6.5406 4.0038 16 1 1.9265 6.6703 3.7138 17 1 3.5940 5.4220 4.9560 18 1 3.8765 7.8044 4.6029 19 6 3.0834 6.9895 -1.9120 20 6 1.8827 7.6773 -1.2592 21 6 1.5413 8.9515 -2.0343 22 7 0.3881 9.6115 -1.4078 23 6 0.7267 10.0998 -0.0643 24 6 -0.1172 10.7021 -2.2524 25 6 2.7697 3.4754 0.7378 26 6 2.2707 2.0966 1.1097 27 8 2.1197 1.6951 2.2442 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.3650 2.5306 -1.6436 34 1 2.8336 1.5524 -1.9379 35 1 4.8781 4.8685 0.0276 36 1 5.0842 6.6173 -0.2316 37 1 6.0908 6.1104 3.2750 38 1 2.8389 6.7329 -2.9428 39 1 3.9397 7.6637 -1.8987 40 1 2.1272 7.9339 -0.2284 41 1 1.0264 7.0031 -1.2725 42 1 1.2970 8.6953 -3.0652 43 1 2.3978 9.6256 -2.0205 44 1 -0.1627 10.5213 0.4040 45 1 1.0981 9.2723 0.5401 46 1 1.4960 10.8683 -0.1402 47 1 0.6702 11.4410 -2.4012 48 1 -0.4259 10.3009 -3.2177 49 1 -0.9703 11.1738 -1.7650 50 1 3.6326 3.7459 1.3463 51 1 1.9748 4.2125 0.8523 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346310695.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:18 Heat of formation + Delta-G solvation = -67.493961 kcal Electronic energy + Delta-G solvation = -29650.852955 eV Core-core repulsion = 25778.220219 eV Total energy + Delta-G solvation = -3872.632735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.43625 -38.87514 -37.49734 -35.93404 -35.28993 -33.77908 -32.76550 -31.48611 -29.38970 -27.63144 -27.46583 -27.08961 -26.01367 -23.85590 -22.94428 -22.67457 -21.58843 -20.52348 -19.02244 -18.28139 -17.03602 -16.63960 -16.27979 -15.81667 -15.51551 -15.23004 -14.96683 -14.83332 -14.56123 -14.37592 -14.10555 -13.68622 -13.60509 -13.24844 -13.07615 -12.86184 -12.73701 -12.31498 -12.28669 -12.08754 -11.96350 -11.88570 -11.71464 -11.56942 -11.40322 -11.36958 -11.11224 -11.03367 -10.93905 -10.84536 -10.76697 -10.63964 -10.28601 -9.94224 -9.66872 -9.48904 -9.01919 -8.58595 -8.43616 -8.25028 -7.83447 -6.23498 -4.28700 3.05093 3.20161 3.23222 3.24654 3.34945 3.38107 3.78453 4.12612 4.32272 4.73368 4.83788 5.09813 5.14089 5.17330 5.20330 5.25880 5.29151 5.36882 5.40630 5.45061 5.47989 5.59892 5.67001 5.68571 5.73413 5.80699 5.82528 5.83612 5.85643 5.94234 5.97956 6.06122 6.08320 6.18261 6.22664 6.46438 6.58512 6.63398 6.77567 6.83541 6.87956 7.09967 7.13907 7.18812 7.44123 7.45128 7.71079 7.97582 8.21153 8.59410 8.71138 8.88144 9.37641 10.82797 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.009257 B = 0.004713 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3024.146675 B = 5939.835105 C = 7528.501588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.123 3.877 3 N -0.627 5.627 4 C 0.121 3.879 5 C -0.115 4.115 6 H 0.110 0.890 7 C 0.528 3.472 8 O -0.569 6.569 9 N -0.590 5.590 10 C 0.234 3.766 11 C -0.534 4.534 12 H 0.065 0.935 13 C 0.069 3.931 14 N -0.888 5.888 15 Si 0.886 3.114 16 H -0.270 1.270 17 H -0.279 1.279 18 H -0.284 1.284 19 C 0.127 3.873 20 C -0.130 4.130 21 C 0.059 3.941 22 N -0.547 5.547 23 C 0.020 3.980 24 C 0.026 3.974 25 C -0.129 4.129 26 C 0.516 3.484 27 O -0.537 6.537 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.039 0.961 36 H 0.036 0.964 37 H 0.265 0.735 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.032 0.968 44 H 0.062 0.938 45 H 0.079 0.921 46 H 0.024 0.976 47 H 0.022 0.978 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.136 0.864 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.341 -0.798 -9.029 10.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.001 3.999 3 N -0.362 5.362 4 C -0.002 4.002 5 C -0.136 4.136 6 H 0.128 0.872 7 C 0.316 3.684 8 O -0.450 6.450 9 N -0.319 5.319 10 C 0.114 3.886 11 C -0.572 4.572 12 H 0.083 0.917 13 C -0.134 4.134 14 N -0.526 5.526 15 Si 0.714 3.286 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.210 1.210 19 C 0.003 3.997 20 C -0.169 4.169 21 C -0.069 4.069 22 N -0.271 5.271 23 C -0.128 4.128 24 C -0.123 4.123 25 C -0.169 4.169 26 C 0.305 3.695 27 O -0.414 6.414 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.050 0.950 44 H 0.081 0.919 45 H 0.098 0.902 46 H 0.042 0.958 47 H 0.040 0.960 48 H 0.084 0.916 49 H 0.083 0.917 50 H 0.154 0.846 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.031 -1.434 -8.722 10.700 hybrid contribution 0.320 0.942 0.931 1.363 sum -5.712 -0.492 -7.790 9.672 Atomic orbital electron populations 1.22164 0.96154 1.01844 1.02619 1.21255 0.94192 0.81786 1.02644 1.48465 1.66545 1.13558 1.07668 1.21925 1.00298 0.91478 0.86531 1.22058 1.01655 0.93465 0.96457 0.87196 1.19939 0.80372 0.84853 0.83266 1.90608 1.36466 1.86653 1.31306 1.48164 1.44005 1.06197 1.33530 1.19557 0.87567 0.98671 0.82787 1.21480 0.94417 1.49985 0.91336 0.91656 1.24867 0.94749 0.94820 0.99012 1.69912 1.06481 1.48873 1.27319 0.86598 0.80348 0.78067 0.83616 1.19447 1.20518 1.21008 1.21192 0.97062 0.86137 0.95332 1.21975 0.98559 0.95489 1.00889 1.22089 0.90805 0.95685 0.98331 1.61963 1.33692 1.28294 1.03169 1.22466 0.99775 0.99983 0.90617 1.22356 0.99264 0.92861 0.97802 1.22673 1.05856 0.93654 0.94670 1.21440 0.75933 0.88046 0.84104 1.90669 1.53967 1.75517 1.21277 0.92257 0.92361 0.91828 0.90724 0.90323 0.89709 0.90624 0.94315 0.94572 0.92487 0.91215 0.91248 0.90012 0.91296 0.91169 0.94981 0.91878 0.90199 0.95788 0.95983 0.91583 0.91717 0.84623 0.87112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 10.24 37.16 0.38 -1.58 16 2 C 0.12 1.54 6.65 -4.04 -0.03 1.51 16 3 N -0.63 -9.69 2.93 -172.41 -0.51 -10.20 16 4 C 0.12 1.76 6.66 -3.12 -0.02 1.74 16 5 C -0.11 -1.90 2.57 -90.14 -0.23 -2.13 16 6 H 0.11 1.70 7.56 -51.93 -0.39 1.31 16 7 C 0.53 9.74 6.99 -10.98 -0.08 9.66 16 8 O -0.57 -11.36 15.15 5.56 0.08 -11.28 16 9 N -0.59 -10.99 2.46 -175.06 -0.43 -11.42 16 10 C 0.23 4.92 4.74 -5.19 -0.02 4.89 16 11 C -0.53 -12.31 5.63 -34.44 -0.19 -12.50 16 12 H 0.07 1.55 6.83 -52.49 -0.36 1.19 16 13 C 0.07 1.71 5.32 -17.82 -0.09 1.61 16 14 N -0.89 -23.06 13.29 55.43 0.74 -22.32 16 15 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 C 0.13 2.10 5.45 -4.04 -0.02 2.08 16 20 C -0.13 -2.14 5.47 -26.73 -0.15 -2.29 16 21 C 0.06 0.82 4.96 -3.82 -0.02 0.81 16 22 N -0.55 -7.59 5.02 -251.26 -1.26 -8.85 16 23 C 0.02 0.27 9.40 60.07 0.56 0.83 16 24 C 0.03 0.28 9.57 60.06 0.57 0.86 16 25 C -0.13 -2.44 4.22 -26.75 -0.11 -2.55 16 26 C 0.52 9.83 8.02 -10.86 -0.09 9.75 16 27 O -0.54 -12.06 17.60 5.56 0.10 -11.97 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.04 7.93 -51.93 -0.41 0.62 16 33 H 0.08 1.32 7.06 -51.93 -0.37 0.95 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.04 0.84 5.96 -51.93 -0.31 0.53 16 36 H 0.04 0.81 7.89 -51.93 -0.41 0.40 16 37 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 38 H 0.07 1.13 7.42 -51.93 -0.39 0.75 16 39 H 0.07 1.08 7.89 -51.93 -0.41 0.67 16 40 H 0.08 1.50 5.59 -51.93 -0.29 1.21 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.07 0.92 8.06 -51.93 -0.42 0.50 16 43 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.08 1.21 6.30 -51.93 -0.33 0.88 16 46 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 48 H 0.07 0.68 8.12 -51.93 -0.42 0.25 16 49 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.14 2.90 6.05 -51.93 -0.31 2.58 16 51 H 0.11 2.24 6.79 -51.92 -0.35 1.89 16 LS Contribution 400.49 15.07 6.04 6.04 Total: -1.00 -28.56 400.49 -8.75 -37.31 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -8.95 Total: 4.82 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 0.46 Total: 12.69 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -1.46 Total: -52.79 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: 0.18 Total: -23.24 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -28.56 -8.75 -37.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346310695.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.185 kcal (2) G-P(sol) polarization free energy of solvation -28.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds