Wall clock time and date at job start Fri Apr 10 2020 18:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47565 * 2 1 4 4 C 1.50706 * 109.47116 * 240.00064 * 2 1 3 5 5 O 1.21279 * 120.00160 * 256.82171 * 4 2 1 6 6 N 1.34780 * 119.99675 * 76.54839 * 4 2 1 7 7 C 1.46496 * 120.00164 * 355.46315 * 6 4 2 8 8 C 1.46495 * 119.99555 * 175.45829 * 6 4 2 9 9 C 1.50695 * 109.47046 * 90.00509 * 8 6 4 10 10 H 1.07997 * 120.00407 * 359.97438 * 9 8 6 11 11 C 1.37887 * 120.00274 * 179.97438 * 9 8 6 12 12 N 1.31512 * 119.99989 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99535 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47216 * 90.00500 * 13 11 9 15 15 H 1.48507 * 109.46954 * 209.99992 * 13 11 9 16 16 H 1.48504 * 109.47427 * 330.00154 * 13 11 9 17 17 N 1.46904 * 109.47028 * 120.00317 * 2 1 3 18 18 C 1.46843 * 111.00107 * 59.21038 * 17 2 1 19 19 C 1.53041 * 109.52347 * 174.15889 * 18 17 2 20 20 C 1.53120 * 109.27535 * 59.17780 * 19 18 17 21 21 C 1.53003 * 109.52167 * 182.43802 * 20 19 18 22 22 C 1.53000 * 109.47085 * 294.68938 * 21 20 19 23 23 C 1.50701 * 109.46820 * 180.02562 * 22 21 20 24 24 N 1.34783 * 119.99733 * 179.97438 * 23 22 21 25 25 O 1.21282 * 120.00275 * 359.97438 * 23 22 21 26 26 C 1.53117 * 109.16372 * 302.34727 * 20 19 18 27 27 C 1.46847 * 111.00038 * 294.99800 * 17 2 1 28 28 H 1.08996 * 109.47371 * 308.03286 * 1 2 3 29 29 H 1.09001 * 109.47630 * 68.03145 * 1 2 3 30 30 H 1.09003 * 109.47178 * 188.03047 * 1 2 3 31 31 H 1.09002 * 109.47260 * 95.64143 * 7 6 4 32 32 H 1.08990 * 109.47207 * 215.64277 * 7 6 4 33 33 H 1.09005 * 109.47238 * 335.64503 * 7 6 4 34 34 H 1.09007 * 109.46938 * 210.00016 * 8 6 4 35 35 H 1.09000 * 109.47436 * 329.99928 * 8 6 4 36 36 H 0.96998 * 119.99325 * 179.97438 * 12 11 9 37 37 H 1.08998 * 109.46049 * 294.17717 * 18 17 2 38 38 H 1.09003 * 109.46270 * 54.14319 * 18 17 2 39 39 H 1.09003 * 109.50245 * 299.23771 * 19 18 17 40 40 H 1.09003 * 109.50148 * 179.12125 * 19 18 17 41 41 H 1.09009 * 109.52137 * 62.25267 * 20 19 18 42 42 H 1.09000 * 109.46561 * 54.68532 * 21 20 19 43 43 H 1.08999 * 109.47278 * 174.68667 * 21 20 19 44 44 H 1.09005 * 109.46662 * 299.99448 * 22 21 20 45 45 H 1.08999 * 109.47714 * 59.99413 * 22 21 20 46 46 H 0.96993 * 120.00238 * 359.97438 * 24 23 22 47 47 H 0.96998 * 119.99919 * 179.97438 * 24 23 22 48 48 H 1.09003 * 109.50018 * 297.71274 * 26 20 19 49 49 H 1.08991 * 109.50402 * 177.60061 * 26 20 19 50 50 H 1.08996 * 109.46098 * 305.85760 * 27 17 2 51 51 H 1.08997 * 109.45863 * 65.82220 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.4602 -1.8420 -1.1452 6 7 2.0009 -0.0902 -2.4267 7 6 1.3880 1.2348 -2.5489 8 6 2.5797 -0.7410 -3.6046 9 6 1.5243 -1.5701 -4.2899 10 1 0.5227 -1.6087 -3.8880 11 6 1.8374 -2.2794 -5.4301 12 7 0.9164 -3.0034 -6.0278 13 14 3.5697 -2.2120 -6.1256 14 1 4.3867 -3.2973 -5.5255 15 1 3.5186 -2.3882 -7.5993 16 1 4.1811 -0.8972 -5.8051 17 7 2.0196 -0.6926 1.1994 18 6 1.5334 -2.0775 1.2428 19 6 2.1776 -2.8090 2.4226 20 6 1.8222 -2.0826 3.7228 21 6 2.5132 -2.7738 4.9000 22 6 1.9473 -4.1856 5.0660 23 6 2.6275 -4.8661 6.2259 24 7 2.2871 -6.1263 6.5616 25 8 3.4811 -4.2799 6.8573 26 6 2.2964 -0.6295 3.6325 27 6 1.6488 0.0388 2.4177 28 1 -0.3634 0.6331 0.8094 29 1 -0.3634 0.3844 -0.9530 30 1 -0.3634 -1.0176 0.1436 31 1 2.1603 2.0006 -2.4754 32 1 0.8868 1.3157 -3.5134 33 1 0.6610 1.3741 -1.7488 34 1 2.9499 0.0180 -4.2939 35 1 3.4037 -1.3844 -3.2961 36 1 1.1367 -3.5020 -6.8301 37 1 0.4500 -2.0785 1.3626 38 1 1.7963 -2.5840 0.3141 39 1 3.2603 -2.8205 2.2963 40 1 1.8046 -3.8324 2.4637 41 1 0.7422 -2.1049 3.8690 42 1 3.5847 -2.8320 4.7090 43 1 2.3370 -2.2023 5.8112 44 1 0.8757 -4.1273 5.2570 45 1 2.1234 -4.7572 4.1548 46 1 1.6042 -6.5950 6.0570 47 1 2.7252 -6.5645 7.3079 48 1 3.3809 -0.6067 3.5253 49 1 2.0084 -0.0958 4.5381 50 1 1.9955 1.0693 2.3422 51 1 0.5649 0.0279 2.5320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347940258.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:21 Heat of formation + Delta-G solvation = -70.523663 kcal Electronic energy + Delta-G solvation = -28744.954004 eV Core-core repulsion = 24872.189891 eV Total energy + Delta-G solvation = -3872.764113 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.23667 -39.71543 -38.28764 -35.54745 -34.92166 -33.95885 -32.68727 -31.95830 -30.65644 -29.46761 -28.12623 -26.27110 -25.60718 -23.93831 -23.15308 -22.21095 -21.15146 -20.35414 -19.46618 -18.44869 -17.59868 -16.96906 -16.92535 -16.47379 -16.00865 -15.81491 -15.00950 -14.77075 -14.58442 -14.41884 -14.31028 -14.08341 -13.90211 -13.56805 -13.30564 -12.98242 -12.75374 -12.64875 -12.35094 -12.22277 -12.15717 -11.92282 -11.75320 -11.63997 -11.50180 -11.35721 -11.16547 -10.82363 -10.78845 -10.62456 -10.50948 -10.29440 -10.15623 -10.13572 -10.11167 -10.00412 -9.53097 -8.66170 -8.58486 -7.99905 -7.67623 -6.08670 -4.06988 2.37683 3.24469 3.29647 3.32406 3.35622 3.37898 3.64603 4.23691 4.40073 4.52960 4.58095 4.73154 4.86237 4.91406 5.05006 5.13880 5.20716 5.23239 5.26074 5.32147 5.39546 5.47084 5.50566 5.52845 5.64610 5.69142 5.72865 5.75010 5.83672 5.87474 5.92953 6.02733 6.07404 6.11303 6.14821 6.26141 6.28468 6.44521 6.51922 6.58941 6.70955 6.93476 6.99787 7.23200 7.34839 7.38310 7.61685 7.97061 8.27567 8.47656 8.93657 9.02802 9.52040 11.04766 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.015830 B = 0.002654 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.338119 B =10548.774134 C =11651.484368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.066 3.934 3 H 0.098 0.902 4 C 0.517 3.483 5 O -0.523 6.523 6 N -0.597 5.597 7 C 0.074 3.926 8 C 0.217 3.783 9 C -0.526 4.526 10 H 0.073 0.927 11 C 0.071 3.929 12 N -0.899 5.899 13 Si 0.876 3.124 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.266 1.266 17 N -0.514 5.514 18 C 0.024 3.976 19 C -0.108 4.108 20 C -0.090 4.090 21 C -0.097 4.097 22 C -0.145 4.145 23 C 0.515 3.485 24 N -0.861 5.861 25 O -0.545 6.545 26 C -0.108 4.108 27 C 0.054 3.946 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.029 0.971 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.024 0.976 38 H 0.130 0.870 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.099 0.901 46 H 0.402 0.598 47 H 0.399 0.601 48 H 0.072 0.928 49 H 0.063 0.937 50 H 0.070 0.930 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.894 2.997 21.735 22.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.047 4.047 3 H 0.116 0.884 4 C 0.303 3.697 5 O -0.399 6.399 6 N -0.329 5.329 7 C -0.070 4.070 8 C 0.096 3.904 9 C -0.564 4.564 10 H 0.092 0.908 11 C -0.131 4.131 12 N -0.537 5.537 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.191 1.191 17 N -0.239 5.239 18 C -0.102 4.102 19 C -0.146 4.146 20 C -0.109 4.109 21 C -0.135 4.135 22 C -0.185 4.185 23 C 0.301 3.699 24 N -0.424 5.424 25 O -0.422 6.422 26 C -0.146 4.146 27 C -0.074 4.074 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.043 0.957 38 H 0.147 0.853 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.111 0.889 45 H 0.117 0.883 46 H 0.230 0.770 47 H 0.229 0.771 48 H 0.090 0.910 49 H 0.082 0.918 50 H 0.089 0.911 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.644 2.809 21.855 22.045 hybrid contribution -0.421 -0.423 -0.419 0.729 sum -1.065 2.387 21.437 21.595 Atomic orbital electron populations 1.22495 0.95721 1.03296 1.03026 1.21624 0.94045 0.98631 0.90360 0.88434 1.20102 0.79164 0.86503 0.83908 1.90458 1.46852 1.17913 1.84719 1.47792 1.57945 1.18158 1.08972 1.21860 0.97510 0.84320 1.03294 1.19649 0.95070 0.93220 0.82456 1.21310 0.97809 1.27761 1.09531 0.90846 1.24861 0.97046 0.94671 0.96489 1.69898 1.33436 1.30389 1.20004 0.86850 0.85300 0.79248 0.78279 1.19900 1.21126 1.19070 1.61898 1.59399 1.02494 1.00080 1.22849 0.95921 0.88906 1.02561 1.21663 1.01914 0.97955 0.93041 1.21282 0.99530 0.95244 0.94838 1.21373 1.00787 0.93015 0.98297 1.21777 1.01249 0.98385 0.97055 1.20900 0.82263 0.81479 0.85260 1.43959 1.44623 1.16417 1.37418 1.90746 1.32637 1.64762 1.54047 1.21577 1.01559 0.94860 0.96568 1.22102 0.97658 0.97556 0.90090 0.91942 0.90727 0.91399 0.93592 0.90698 0.91423 0.95272 0.94615 0.92602 0.95748 0.85317 0.91075 0.91912 0.91678 0.91017 0.91476 0.88920 0.88302 0.77012 0.77100 0.90973 0.91817 0.91126 0.94943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.42 8.07 37.15 0.30 -2.12 16 2 C 0.07 0.97 1.93 -68.86 -0.13 0.84 16 3 H 0.10 1.26 7.46 -51.93 -0.39 0.87 16 4 C 0.52 10.32 6.83 -10.98 -0.07 10.25 16 5 O -0.52 -12.40 12.98 5.56 0.07 -12.33 16 6 N -0.60 -12.12 2.86 -182.96 -0.52 -12.64 16 7 C 0.07 1.11 9.87 59.84 0.59 1.70 16 8 C 0.22 5.27 4.22 -5.20 -0.02 5.25 16 9 C -0.53 -14.96 9.94 -34.44 -0.34 -15.30 16 10 H 0.07 2.29 8.06 -52.49 -0.42 1.87 16 11 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 12 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 13 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 14 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 17 N -0.51 -7.38 4.55 -228.09 -1.04 -8.42 16 18 C 0.02 0.36 4.54 -3.83 -0.02 0.34 16 19 C -0.11 -1.30 5.08 -26.65 -0.14 -1.44 16 20 C -0.09 -0.89 2.25 -90.50 -0.20 -1.09 16 21 C -0.10 -0.92 3.98 -26.73 -0.11 -1.02 16 22 C -0.14 -1.10 5.46 -27.88 -0.15 -1.25 16 23 C 0.52 4.80 8.10 -10.98 -0.09 4.71 16 24 N -0.86 -4.78 8.87 31.22 0.28 -4.50 16 25 O -0.55 -7.55 16.82 5.56 0.09 -7.45 16 26 C -0.11 -1.09 5.38 -26.65 -0.14 -1.24 16 27 C 0.05 0.60 5.03 -3.84 -0.02 0.58 16 28 H 0.06 0.65 7.07 -51.93 -0.37 0.29 16 29 H 0.07 0.98 5.88 -51.93 -0.31 0.68 16 30 H 0.07 0.98 6.11 -51.93 -0.32 0.66 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 33 H 0.07 0.84 4.34 -51.93 -0.23 0.61 16 34 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 35 H 0.04 0.93 6.92 -51.93 -0.36 0.57 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.02 0.35 6.44 -51.93 -0.33 0.01 16 38 H 0.13 2.45 4.76 -52.35 -0.25 2.20 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.67 6.71 -51.93 -0.35 0.32 16 41 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 42 H 0.07 0.80 8.10 -51.93 -0.42 0.37 16 43 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 44 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.10 0.68 6.64 -51.93 -0.34 0.34 16 46 H 0.40 1.08 8.83 -40.82 -0.36 0.72 16 47 H 0.40 1.94 8.93 -40.82 -0.36 1.57 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 51 H 0.03 0.34 6.92 -51.93 -0.36 -0.02 16 LS Contribution 386.13 15.07 5.82 5.82 Total: -1.00 -36.17 386.13 -8.34 -44.51 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -8.50 Total: 2.77 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -0.65 Total: 2.18 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.51 Total: -52.37 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: 0.17 Total: -19.78 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.17 -8.34 -44.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347940258.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.017 kcal (2) G-P(sol) polarization free energy of solvation -36.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds