Wall clock time and date at job start Fri Apr 10 2020 18:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47565 * 2 1 4 4 C 1.50706 * 109.47116 * 240.00064 * 2 1 3 5 5 O 1.21279 * 120.00160 * 256.82171 * 4 2 1 6 6 N 1.34780 * 119.99675 * 76.54839 * 4 2 1 7 7 C 1.46496 * 120.00164 * 355.46315 * 6 4 2 8 8 C 1.46495 * 119.99555 * 175.45829 * 6 4 2 9 9 C 1.50695 * 109.47046 * 90.00509 * 8 6 4 10 10 H 1.07997 * 120.00407 * 359.97438 * 9 8 6 11 11 C 1.37887 * 120.00274 * 179.97438 * 9 8 6 12 12 N 1.31512 * 119.99989 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99535 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47216 * 90.00500 * 13 11 9 15 15 H 1.48507 * 109.46954 * 209.99992 * 13 11 9 16 16 H 1.48504 * 109.47427 * 330.00154 * 13 11 9 17 17 N 1.46904 * 109.47028 * 120.00317 * 2 1 3 18 18 C 1.46843 * 111.00107 * 59.21038 * 17 2 1 19 19 C 1.53041 * 109.52347 * 174.15889 * 18 17 2 20 20 C 1.53120 * 109.27535 * 59.17780 * 19 18 17 21 21 C 1.53003 * 109.52167 * 182.43802 * 20 19 18 22 22 C 1.53000 * 109.47085 * 294.68938 * 21 20 19 23 23 C 1.50701 * 109.46820 * 180.02562 * 22 21 20 24 24 N 1.34783 * 119.99733 * 179.97438 * 23 22 21 25 25 O 1.21282 * 120.00275 * 359.97438 * 23 22 21 26 26 C 1.53117 * 109.16372 * 302.34727 * 20 19 18 27 27 C 1.46847 * 111.00038 * 294.99800 * 17 2 1 28 28 H 1.08996 * 109.47371 * 308.03286 * 1 2 3 29 29 H 1.09001 * 109.47630 * 68.03145 * 1 2 3 30 30 H 1.09003 * 109.47178 * 188.03047 * 1 2 3 31 31 H 1.09002 * 109.47260 * 95.64143 * 7 6 4 32 32 H 1.08990 * 109.47207 * 215.64277 * 7 6 4 33 33 H 1.09005 * 109.47238 * 335.64503 * 7 6 4 34 34 H 1.09007 * 109.46938 * 210.00016 * 8 6 4 35 35 H 1.09000 * 109.47436 * 329.99928 * 8 6 4 36 36 H 0.96998 * 119.99325 * 179.97438 * 12 11 9 37 37 H 1.08998 * 109.46049 * 294.17717 * 18 17 2 38 38 H 1.09003 * 109.46270 * 54.14319 * 18 17 2 39 39 H 1.09003 * 109.50245 * 299.23771 * 19 18 17 40 40 H 1.09003 * 109.50148 * 179.12125 * 19 18 17 41 41 H 1.09009 * 109.52137 * 62.25267 * 20 19 18 42 42 H 1.09000 * 109.46561 * 54.68532 * 21 20 19 43 43 H 1.08999 * 109.47278 * 174.68667 * 21 20 19 44 44 H 1.09005 * 109.46662 * 299.99448 * 22 21 20 45 45 H 1.08999 * 109.47714 * 59.99413 * 22 21 20 46 46 H 0.96993 * 120.00238 * 359.97438 * 24 23 22 47 47 H 0.96998 * 119.99919 * 179.97438 * 24 23 22 48 48 H 1.09003 * 109.50018 * 297.71274 * 26 20 19 49 49 H 1.08991 * 109.50402 * 177.60061 * 26 20 19 50 50 H 1.08996 * 109.46098 * 305.85760 * 27 17 2 51 51 H 1.08997 * 109.45863 * 65.82220 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.4602 -1.8420 -1.1452 6 7 2.0009 -0.0902 -2.4267 7 6 1.3880 1.2348 -2.5489 8 6 2.5797 -0.7410 -3.6046 9 6 1.5243 -1.5701 -4.2899 10 1 0.5227 -1.6087 -3.8880 11 6 1.8374 -2.2794 -5.4301 12 7 0.9164 -3.0034 -6.0278 13 14 3.5697 -2.2120 -6.1256 14 1 4.3867 -3.2973 -5.5255 15 1 3.5186 -2.3882 -7.5993 16 1 4.1811 -0.8972 -5.8051 17 7 2.0196 -0.6926 1.1994 18 6 1.5334 -2.0775 1.2428 19 6 2.1776 -2.8090 2.4226 20 6 1.8222 -2.0826 3.7228 21 6 2.5132 -2.7738 4.9000 22 6 1.9473 -4.1856 5.0660 23 6 2.6275 -4.8661 6.2259 24 7 2.2871 -6.1263 6.5616 25 8 3.4811 -4.2799 6.8573 26 6 2.2964 -0.6295 3.6325 27 6 1.6488 0.0388 2.4177 28 1 -0.3634 0.6331 0.8094 29 1 -0.3634 0.3844 -0.9530 30 1 -0.3634 -1.0176 0.1436 31 1 2.1603 2.0006 -2.4754 32 1 0.8868 1.3157 -3.5134 33 1 0.6610 1.3741 -1.7488 34 1 2.9499 0.0180 -4.2939 35 1 3.4037 -1.3844 -3.2961 36 1 1.1367 -3.5020 -6.8301 37 1 0.4500 -2.0785 1.3626 38 1 1.7963 -2.5840 0.3141 39 1 3.2603 -2.8205 2.2963 40 1 1.8046 -3.8324 2.4637 41 1 0.7422 -2.1049 3.8690 42 1 3.5847 -2.8320 4.7090 43 1 2.3370 -2.2023 5.8112 44 1 0.8757 -4.1273 5.2570 45 1 2.1234 -4.7572 4.1548 46 1 1.6042 -6.5950 6.0570 47 1 2.7252 -6.5645 7.3079 48 1 3.3809 -0.6067 3.5253 49 1 2.0084 -0.0958 4.5381 50 1 1.9955 1.0693 2.3422 51 1 0.5649 0.0279 2.5320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347940258.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:20 Heat of formation + Delta-G solvation = -99.584863 kcal Electronic energy + Delta-G solvation = -28746.214192 eV Core-core repulsion = 24872.189891 eV Total energy + Delta-G solvation = -3874.024301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.46063 -40.55317 -39.46900 -36.74983 -36.39638 -34.72955 -34.61401 -33.01830 -31.64266 -30.78265 -29.63900 -27.58315 -26.61176 -25.39258 -24.13920 -23.65577 -22.21424 -21.06807 -20.43784 -19.90596 -19.12676 -18.19753 -17.88003 -17.61326 -17.35071 -16.59184 -16.51544 -16.16778 -15.84812 -15.65179 -15.47125 -15.14929 -14.89923 -14.73283 -14.46835 -14.31661 -14.01128 -13.84451 -13.66607 -13.60793 -13.27558 -13.24834 -13.04456 -12.84286 -12.70246 -12.52964 -12.41796 -12.24544 -12.00521 -11.98989 -11.76552 -11.73690 -11.48818 -11.24256 -11.10349 -10.93427 -10.82458 -10.62847 -10.07355 -9.36318 -9.08642 -8.33435 -6.37617 1.32804 1.36768 1.45060 1.67659 1.82815 2.25071 2.31329 2.67962 3.01166 3.08830 3.64871 3.81438 3.86022 3.92451 4.03024 4.10144 4.18037 4.32904 4.34551 4.42778 4.43741 4.53517 4.63082 4.67286 4.67505 4.72788 4.74635 4.78112 4.83004 4.86626 4.94962 4.97730 5.02262 5.07008 5.14812 5.21467 5.26156 5.29882 5.37716 5.40816 5.47650 5.62101 5.70738 5.92194 6.11131 6.26419 6.32451 6.48878 6.63195 6.76443 7.23512 7.38080 7.50470 8.83547 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.015830 B = 0.002654 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.338119 B =10548.774134 C =11651.484368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.077 3.923 3 H 0.127 0.873 4 C 0.503 3.497 5 O -0.572 6.572 6 N -0.607 5.607 7 C 0.068 3.932 8 C 0.225 3.775 9 C -0.530 4.530 10 H 0.028 0.972 11 C 0.010 3.990 12 N -0.946 5.946 13 Si 0.947 3.053 14 H -0.277 1.277 15 H -0.275 1.275 16 H -0.239 1.239 17 N -0.531 5.531 18 C 0.029 3.971 19 C -0.103 4.103 20 C -0.079 4.079 21 C -0.091 4.091 22 C -0.141 4.141 23 C 0.511 3.489 24 N -0.842 5.842 25 O -0.598 6.598 26 C -0.108 4.108 27 C 0.054 3.946 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.049 0.951 35 H 0.016 0.984 36 H 0.268 0.732 37 H 0.031 0.969 38 H 0.082 0.918 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.048 0.952 43 H 0.066 0.934 44 H 0.120 0.880 45 H 0.107 0.893 46 H 0.418 0.582 47 H 0.404 0.596 48 H 0.056 0.944 49 H 0.086 0.914 50 H 0.087 0.913 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.093 4.906 23.291 23.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.035 4.035 3 H 0.145 0.855 4 C 0.292 3.708 5 O -0.452 6.452 6 N -0.339 5.339 7 C -0.074 4.074 8 C 0.102 3.898 9 C -0.568 4.568 10 H 0.046 0.954 11 C -0.187 4.187 12 N -0.586 5.586 13 Si 0.770 3.230 14 H -0.203 1.203 15 H -0.200 1.200 16 H -0.162 1.162 17 N -0.256 5.256 18 C -0.098 4.098 19 C -0.140 4.140 20 C -0.098 4.098 21 C -0.129 4.129 22 C -0.181 4.181 23 C 0.297 3.703 24 N -0.406 5.406 25 O -0.479 6.479 26 C -0.146 4.146 27 C -0.073 4.073 28 H 0.117 0.883 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.067 0.933 35 H 0.034 0.966 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.138 0.862 45 H 0.125 0.875 46 H 0.249 0.751 47 H 0.235 0.765 48 H 0.074 0.926 49 H 0.105 0.895 50 H 0.105 0.895 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.891 4.732 23.424 23.914 hybrid contribution -0.454 -1.087 -0.868 1.463 sum -1.345 3.645 22.556 22.888 Atomic orbital electron populations 1.22452 0.94155 1.02909 1.04289 1.21595 0.94995 0.98952 0.87986 0.85541 1.21208 0.78189 0.86202 0.85242 1.90469 1.48798 1.20209 1.85701 1.47931 1.58099 1.19838 1.08029 1.22148 0.98946 0.82335 1.03925 1.19302 0.93288 0.93109 0.84064 1.21524 0.96985 1.28574 1.09765 0.95364 1.25836 1.01823 0.94135 0.96941 1.70048 1.36041 1.31696 1.20848 0.85731 0.79312 0.80316 0.77673 1.20320 1.20034 1.16203 1.61875 1.60076 1.02451 1.01209 1.22607 0.96380 0.89508 1.01322 1.21610 1.00221 0.98786 0.93431 1.21191 1.00385 0.94887 0.93293 1.21258 0.99439 0.94283 0.97895 1.21782 1.02468 0.97128 0.96676 1.21208 0.81639 0.82214 0.85210 1.43822 1.44256 1.15298 1.37183 1.90726 1.35054 1.66225 1.55932 1.21605 1.00578 0.95152 0.97218 1.22216 0.98604 0.97930 0.88503 0.88255 0.91022 0.93364 0.90384 0.91787 0.88535 0.93336 0.96603 0.92328 0.95126 0.89995 0.93360 0.90722 0.90015 0.93352 0.91560 0.86212 0.87530 0.75095 0.76516 0.92564 0.89530 0.89467 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.26 8.07 71.98 0.58 -3.68 16 2 C 0.08 2.13 1.93 44.17 0.09 2.21 16 3 H 0.13 2.79 7.46 -2.39 -0.02 2.77 16 4 C 0.50 20.28 6.83 87.66 0.60 20.88 16 5 O -0.57 -28.49 12.98 -3.03 -0.04 -28.52 16 6 N -0.61 -24.55 2.86 -851.15 -2.43 -26.98 16 7 C 0.07 1.92 9.87 127.77 1.26 3.18 16 8 C 0.22 11.02 4.22 85.63 0.36 11.38 16 9 C -0.53 -31.24 9.94 25.60 0.25 -30.98 16 10 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 11 C 0.01 0.62 5.47 84.66 0.46 1.08 16 12 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 13 Si 0.95 44.82 27.47 68.60 1.88 46.70 16 14 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 15 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 16 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 17 N -0.53 -14.58 4.55 -875.53 -3.99 -18.57 16 18 C 0.03 0.87 4.54 86.33 0.39 1.26 16 19 C -0.10 -2.46 5.08 30.65 0.16 -2.30 16 20 C -0.08 -1.41 2.25 -10.71 -0.02 -1.43 16 21 C -0.09 -1.62 3.98 30.60 0.12 -1.50 16 22 C -0.14 -1.89 5.46 29.85 0.16 -1.73 16 23 C 0.51 9.00 8.10 87.66 0.71 9.71 16 24 N -0.84 -7.99 8.87 -173.52 -1.54 -9.53 16 25 O -0.60 -16.62 16.82 -3.04 -0.05 -16.67 16 26 C -0.11 -1.93 5.38 30.64 0.16 -1.77 16 27 C 0.05 1.04 5.03 86.32 0.43 1.47 16 28 H 0.10 1.65 7.07 -2.39 -0.02 1.63 16 29 H 0.07 1.74 5.88 -2.39 -0.01 1.73 16 30 H 0.05 1.34 6.11 -2.39 -0.01 1.33 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.94 8.11 -2.39 -0.02 1.92 16 33 H 0.10 2.12 4.34 -2.38 -0.01 2.11 16 34 H 0.05 2.19 7.13 -2.38 -0.02 2.17 16 35 H 0.02 0.84 6.92 -2.39 -0.02 0.82 16 36 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 37 H 0.03 0.85 6.44 -2.39 -0.02 0.84 16 38 H 0.08 3.32 4.76 -9.07 -0.04 3.27 16 39 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.07 1.55 6.71 -2.39 -0.02 1.54 16 41 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 42 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 43 H 0.07 1.21 8.10 -2.39 -0.02 1.19 16 44 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 45 H 0.11 1.29 6.64 -2.39 -0.02 1.27 16 46 H 0.42 1.29 8.83 -92.71 -0.82 0.47 16 47 H 0.40 3.38 8.93 -92.71 -0.83 2.56 16 48 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.09 1.40 8.08 -2.39 -0.02 1.38 16 51 H 0.05 0.78 6.92 -2.39 -0.02 0.77 16 Total: -1.00 -85.10 386.13 -0.93 -86.03 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -0.78 Total: 19.43 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 5.72 Total: 7.79 kcal Atomic # 7 Polarization: -107.10 SS G_CDS: -7.66 Total: -114.76 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -0.09 Total: -45.19 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Total: -85.10 -0.93 -86.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347940258.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.556 kcal (2) G-P(sol) polarization free energy of solvation -85.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds