Wall clock time and date at job start Fri Apr 10 2020 18:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46994 * 2 1 4 4 C 1.46503 * 119.99696 * 90.00032 * 3 2 1 5 5 C 1.50703 * 109.46875 * 90.00020 * 4 3 2 6 6 H 1.07992 * 120.00379 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99512 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00366 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99595 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47281 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47055 * 119.99921 * 9 7 5 12 12 H 1.48500 * 109.46805 * 239.99694 * 9 7 5 13 13 C 1.34774 * 120.00064 * 270.00077 * 3 2 1 14 14 O 1.21284 * 119.99704 * 179.97438 * 13 3 2 15 15 C 1.50704 * 120.00055 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.46752 * 173.74750 * 15 13 3 17 17 C 1.46848 * 110.99455 * 169.40141 * 16 15 13 18 18 C 1.53042 * 109.52153 * 185.84205 * 17 16 15 19 19 C 1.53126 * 109.27514 * 300.81944 * 18 17 16 20 20 C 1.52999 * 109.57039 * 177.59232 * 19 18 17 21 21 C 1.53005 * 109.47190 * 65.28780 * 20 19 18 22 22 C 1.50703 * 109.47089 * 179.97438 * 21 20 19 23 23 N 1.34777 * 120.00273 * 179.97438 * 22 21 20 24 24 O 1.21284 * 120.00043 * 359.97438 * 22 21 20 25 25 C 1.53118 * 109.16066 * 57.65495 * 19 18 17 26 26 C 1.46846 * 111.00425 * 293.60905 * 16 15 13 27 27 H 1.08998 * 109.47064 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47041 * 300.00009 * 1 2 3 29 29 H 1.09000 * 109.47470 * 59.99758 * 1 2 3 30 30 H 1.08997 * 109.47375 * 240.00307 * 2 1 3 31 31 H 1.09004 * 109.47026 * 120.00010 * 2 1 3 32 32 H 1.09000 * 109.47085 * 209.99628 * 4 3 2 33 33 H 1.09001 * 109.47143 * 330.00067 * 4 3 2 34 34 H 0.96999 * 120.00026 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.46787 * 293.75180 * 15 13 3 36 36 H 1.09000 * 109.47013 * 53.74864 * 15 13 3 37 37 H 1.09000 * 109.46501 * 305.85172 * 17 16 15 38 38 H 1.09001 * 109.46489 * 65.82722 * 17 16 15 39 39 H 1.09001 * 109.50491 * 180.87976 * 18 17 16 40 40 H 1.08995 * 109.50563 * 60.75990 * 18 17 16 41 41 H 1.09004 * 109.51903 * 297.74941 * 19 18 17 42 42 H 1.09005 * 109.46606 * 185.28463 * 20 19 18 43 43 H 1.08999 * 109.47686 * 305.28378 * 20 19 18 44 44 H 1.08996 * 109.46520 * 299.99384 * 21 20 19 45 45 H 1.08996 * 109.46997 * 60.00021 * 21 20 19 46 46 H 0.97003 * 119.99392 * 359.97438 * 23 22 21 47 47 H 0.96997 * 120.00329 * 179.97438 * 23 22 21 48 48 H 1.08999 * 109.49963 * 182.40006 * 25 19 18 49 49 H 1.08996 * 109.53331 * 62.30645 * 25 19 18 50 50 H 1.09004 * 109.46151 * 294.18036 * 26 16 15 51 51 H 1.09000 * 109.46097 * 54.15336 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 1.2688 5 6 3.6858 1.8350 1.7038 6 1 4.3428 1.2310 1.0958 7 6 4.1493 2.3905 2.8775 8 7 3.3496 3.1273 3.6172 9 14 5.9138 2.0975 3.4164 10 1 6.6015 1.2424 2.4159 11 1 6.6210 3.3988 3.5241 12 1 5.9217 1.4190 4.7373 13 6 2.2429 2.0166 -1.1672 14 8 2.6467 3.1603 -1.1671 15 6 1.9912 1.3064 -2.4723 16 7 2.1649 2.2501 -3.5846 17 6 2.1763 1.5473 -4.8739 18 6 2.5035 2.5380 -5.9936 19 6 1.4518 3.6509 -6.0070 20 6 1.8057 4.6775 -7.0849 21 6 1.7089 4.0226 -8.4643 22 6 2.0568 5.0339 -9.5260 23 7 2.0393 4.6793 -10.8262 24 8 2.3527 6.1670 -9.2105 25 6 1.4266 4.3350 -4.6373 26 6 1.1308 3.2923 -3.5571 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.0955 3.1411 1.1385 33 1 1.5816 1.6877 2.0284 34 1 3.6758 3.5184 4.4427 35 1 2.6976 0.4835 -2.5802 36 1 0.9737 0.9156 -2.4829 37 1 2.9312 0.7613 -4.8525 38 1 1.1967 1.1049 -5.0552 39 1 2.4965 2.0192 -6.9522 40 1 3.4888 2.9705 -5.8204 41 1 0.4718 3.2234 -6.2188 42 1 1.1105 5.5153 -7.0308 43 1 2.8219 5.0376 -6.9242 44 1 2.4040 3.1848 -8.5183 45 1 0.6927 3.6627 -8.6250 46 1 1.8030 3.7729 -11.0784 47 1 2.2629 5.3303 -11.5096 48 1 0.6503 5.1001 -4.6270 49 1 2.3947 4.7963 -4.4425 50 1 0.1560 2.8417 -3.7445 51 1 1.1263 3.7737 -2.5792 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347940277.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:27 Heat of formation + Delta-G solvation = -89.717421 kcal Electronic energy + Delta-G solvation = -28244.564132 eV Core-core repulsion = 24370.967715 eV Total energy + Delta-G solvation = -3873.596417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.01373 -39.50815 -38.29728 -35.41805 -34.87363 -34.00960 -32.77004 -31.36745 -30.75042 -30.04402 -28.17829 -26.50570 -24.71348 -23.14704 -22.97245 -22.41650 -21.50996 -20.44028 -19.71118 -18.25236 -17.65767 -16.99822 -16.58049 -16.28196 -15.88158 -15.85705 -15.18043 -14.99479 -14.40946 -14.39128 -14.28489 -14.06587 -13.75415 -13.62949 -13.32322 -12.94135 -12.81330 -12.63873 -12.42726 -12.15818 -11.96987 -11.92915 -11.57639 -11.34902 -11.25618 -11.15128 -11.12513 -10.86867 -10.71130 -10.64256 -10.51487 -10.37834 -10.21719 -10.14227 -10.07501 -10.05855 -9.55090 -8.79210 -8.39635 -8.06828 -7.57638 -6.00155 -4.04304 2.32778 3.18371 3.32759 3.40393 3.43901 3.53070 3.71029 4.25702 4.46934 4.49572 4.54691 4.64660 4.83725 4.93527 5.04281 5.14111 5.24356 5.30868 5.31980 5.34503 5.41487 5.42019 5.47588 5.57291 5.61326 5.63222 5.70548 5.78991 5.81311 5.86534 5.91310 6.03407 6.04082 6.11505 6.21299 6.24427 6.33236 6.39478 6.48457 6.49278 6.94014 7.02586 7.22571 7.28049 7.50303 7.62571 7.92336 7.97267 8.28871 8.50694 8.96620 9.21113 9.60911 11.07876 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.018547 B = 0.002319 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.337315 B =12070.874982 C =12848.451724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.108 3.892 3 N -0.601 5.601 4 C 0.248 3.752 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.059 3.941 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.505 3.495 14 O -0.521 6.521 15 C 0.038 3.962 16 N -0.518 5.518 17 C 0.057 3.943 18 C -0.112 4.112 19 C -0.088 4.088 20 C -0.099 4.099 21 C -0.143 4.143 22 C 0.513 3.487 23 N -0.861 5.861 24 O -0.541 6.541 25 C -0.108 4.108 26 C 0.055 3.945 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.030 0.970 34 H 0.262 0.738 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.028 0.972 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.401 0.599 47 H 0.399 0.601 48 H 0.064 0.936 49 H 0.076 0.924 50 H 0.022 0.978 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.251 -6.635 -25.603 27.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.334 5.334 4 C 0.129 3.871 5 C -0.562 4.562 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.211 1.211 13 C 0.291 3.709 14 O -0.397 6.397 15 C -0.093 4.093 16 N -0.243 5.243 17 C -0.071 4.071 18 C -0.149 4.149 19 C -0.107 4.107 20 C -0.137 4.137 21 C -0.183 4.183 22 C 0.299 3.701 23 N -0.425 5.425 24 O -0.418 6.418 25 C -0.146 4.146 26 C -0.072 4.072 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.114 0.886 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.047 0.953 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.114 0.886 45 H 0.110 0.890 46 H 0.229 0.771 47 H 0.229 0.771 48 H 0.083 0.917 49 H 0.094 0.906 50 H 0.041 0.959 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.418 -4.992 -24.947 26.501 hybrid contribution 0.125 -0.968 -0.151 0.988 sum -7.292 -5.960 -25.099 26.807 Atomic orbital electron populations 1.22224 0.96995 1.01278 1.02198 1.21376 0.93329 0.84457 1.02518 1.48275 1.64231 1.13191 1.07738 1.19235 0.96176 0.93596 0.78135 1.21484 0.96959 1.31636 1.06074 0.92442 1.24943 0.97811 0.94995 0.96473 1.69942 1.35575 1.33576 1.14393 0.86452 0.84760 0.78051 0.78211 1.19814 1.20896 1.21058 1.20154 0.78883 0.87185 0.84692 1.90660 1.44445 1.17792 1.86795 1.22058 1.00864 0.95380 0.91021 1.61511 1.49007 1.12692 1.01089 1.22086 0.99666 0.96064 0.89277 1.21689 1.00042 0.96212 0.96992 1.21253 0.98723 0.95632 0.95092 1.21394 1.03498 0.97793 0.90996 1.21766 1.03677 0.98308 0.94513 1.20905 0.75987 0.89321 0.83893 1.43959 1.73700 1.16801 1.08043 1.90769 1.47513 1.21514 1.81970 1.21577 1.02957 0.97317 0.92725 1.22177 0.90800 0.92959 1.01268 0.92269 0.92023 0.93299 0.91983 0.89990 0.93975 0.95172 0.92844 0.88635 0.92909 0.90899 0.95337 0.91799 0.90722 0.91656 0.91193 0.90871 0.88579 0.88953 0.77135 0.77069 0.91704 0.90560 0.95944 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.18 37.16 0.38 -1.86 16 2 C 0.11 1.71 5.85 -4.04 -0.02 1.68 16 3 N -0.60 -12.68 2.46 -175.05 -0.43 -13.11 16 4 C 0.25 6.51 5.16 -5.19 -0.03 6.48 16 5 C -0.52 -14.98 9.39 -34.44 -0.32 -15.31 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 9 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.51 10.55 7.20 -10.98 -0.08 10.47 16 14 O -0.52 -13.22 14.29 5.55 0.08 -13.14 16 15 C 0.04 0.58 3.92 -4.98 -0.02 0.56 16 16 N -0.52 -7.68 4.35 -236.12 -1.03 -8.70 16 17 C 0.06 0.62 5.46 -3.83 -0.02 0.60 16 18 C -0.11 -1.05 5.08 -26.64 -0.14 -1.18 16 19 C -0.09 -0.84 2.25 -90.49 -0.20 -1.04 16 20 C -0.10 -0.91 3.98 -26.73 -0.11 -1.02 16 21 C -0.14 -0.91 5.46 -27.88 -0.15 -1.07 16 22 C 0.51 4.37 8.10 -10.98 -0.09 4.28 16 23 N -0.86 -3.89 8.87 31.22 0.28 -3.62 16 24 O -0.54 -7.32 16.82 5.55 0.09 -7.23 16 25 C -0.11 -1.34 5.38 -26.65 -0.14 -1.49 16 26 C 0.06 0.81 5.12 -3.84 -0.02 0.79 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.62 7.12 -51.93 -0.37 0.25 16 30 H 0.06 0.82 6.61 -51.93 -0.34 0.47 16 31 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 32 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 33 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.10 1.32 7.55 -51.93 -0.39 0.92 16 36 H 0.05 0.70 6.83 -51.93 -0.35 0.34 16 37 H 0.07 0.74 8.01 -51.93 -0.42 0.32 16 38 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.06 0.43 6.71 -51.93 -0.35 0.08 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 43 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 44 H 0.10 0.47 6.64 -51.93 -0.34 0.12 16 45 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.40 0.53 8.83 -40.82 -0.36 0.17 16 47 H 0.40 1.61 8.93 -40.82 -0.36 1.24 16 48 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 51 H 0.09 1.67 6.05 -51.93 -0.31 1.36 16 LS Contribution 401.34 15.07 6.05 6.05 Total: -1.00 -36.80 401.34 -9.33 -46.13 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -9.02 Total: -0.91 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -1.06 Total: 3.53 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.44 Total: -51.62 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.17 Total: -20.37 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.80 -9.33 -46.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347940277.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.591 kcal (2) G-P(sol) polarization free energy of solvation -36.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds