Wall clock time and date at job start Fri Apr 10 2020 18:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46994 * 2 1 4 4 C 1.46503 * 119.99696 * 90.00032 * 3 2 1 5 5 C 1.50703 * 109.46875 * 90.00020 * 4 3 2 6 6 H 1.07992 * 120.00379 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99512 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00366 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99595 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47281 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47055 * 119.99921 * 9 7 5 12 12 H 1.48500 * 109.46805 * 239.99694 * 9 7 5 13 13 C 1.34774 * 120.00064 * 270.00077 * 3 2 1 14 14 O 1.21284 * 119.99704 * 179.97438 * 13 3 2 15 15 C 1.50704 * 120.00055 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.46752 * 173.74750 * 15 13 3 17 17 C 1.46848 * 110.99455 * 169.40141 * 16 15 13 18 18 C 1.53042 * 109.52153 * 185.84205 * 17 16 15 19 19 C 1.53126 * 109.27514 * 300.81944 * 18 17 16 20 20 C 1.52999 * 109.57039 * 177.59232 * 19 18 17 21 21 C 1.53005 * 109.47190 * 65.28780 * 20 19 18 22 22 C 1.50703 * 109.47089 * 179.97438 * 21 20 19 23 23 N 1.34777 * 120.00273 * 179.97438 * 22 21 20 24 24 O 1.21284 * 120.00043 * 359.97438 * 22 21 20 25 25 C 1.53118 * 109.16066 * 57.65495 * 19 18 17 26 26 C 1.46846 * 111.00425 * 293.60905 * 16 15 13 27 27 H 1.08998 * 109.47064 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47041 * 300.00009 * 1 2 3 29 29 H 1.09000 * 109.47470 * 59.99758 * 1 2 3 30 30 H 1.08997 * 109.47375 * 240.00307 * 2 1 3 31 31 H 1.09004 * 109.47026 * 120.00010 * 2 1 3 32 32 H 1.09000 * 109.47085 * 209.99628 * 4 3 2 33 33 H 1.09001 * 109.47143 * 330.00067 * 4 3 2 34 34 H 0.96999 * 120.00026 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.46787 * 293.75180 * 15 13 3 36 36 H 1.09000 * 109.47013 * 53.74864 * 15 13 3 37 37 H 1.09000 * 109.46501 * 305.85172 * 17 16 15 38 38 H 1.09001 * 109.46489 * 65.82722 * 17 16 15 39 39 H 1.09001 * 109.50491 * 180.87976 * 18 17 16 40 40 H 1.08995 * 109.50563 * 60.75990 * 18 17 16 41 41 H 1.09004 * 109.51903 * 297.74941 * 19 18 17 42 42 H 1.09005 * 109.46606 * 185.28463 * 20 19 18 43 43 H 1.08999 * 109.47686 * 305.28378 * 20 19 18 44 44 H 1.08996 * 109.46520 * 299.99384 * 21 20 19 45 45 H 1.08996 * 109.46997 * 60.00021 * 21 20 19 46 46 H 0.97003 * 119.99392 * 359.97438 * 23 22 21 47 47 H 0.96997 * 120.00329 * 179.97438 * 23 22 21 48 48 H 1.08999 * 109.49963 * 182.40006 * 25 19 18 49 49 H 1.08996 * 109.53331 * 62.30645 * 25 19 18 50 50 H 1.09004 * 109.46151 * 294.18036 * 26 16 15 51 51 H 1.09000 * 109.46097 * 54.15336 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 1.2688 5 6 3.6858 1.8350 1.7038 6 1 4.3428 1.2310 1.0958 7 6 4.1493 2.3905 2.8775 8 7 3.3496 3.1273 3.6172 9 14 5.9138 2.0975 3.4164 10 1 6.6015 1.2424 2.4159 11 1 6.6210 3.3988 3.5241 12 1 5.9217 1.4190 4.7373 13 6 2.2429 2.0166 -1.1672 14 8 2.6467 3.1603 -1.1671 15 6 1.9912 1.3064 -2.4723 16 7 2.1649 2.2501 -3.5846 17 6 2.1763 1.5473 -4.8739 18 6 2.5035 2.5380 -5.9936 19 6 1.4518 3.6509 -6.0070 20 6 1.8057 4.6775 -7.0849 21 6 1.7089 4.0226 -8.4643 22 6 2.0568 5.0339 -9.5260 23 7 2.0393 4.6793 -10.8262 24 8 2.3527 6.1670 -9.2105 25 6 1.4266 4.3350 -4.6373 26 6 1.1308 3.2923 -3.5571 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.0955 3.1411 1.1385 33 1 1.5816 1.6877 2.0284 34 1 3.6758 3.5184 4.4427 35 1 2.6976 0.4835 -2.5802 36 1 0.9737 0.9156 -2.4829 37 1 2.9312 0.7613 -4.8525 38 1 1.1967 1.1049 -5.0552 39 1 2.4965 2.0192 -6.9522 40 1 3.4888 2.9705 -5.8204 41 1 0.4718 3.2234 -6.2188 42 1 1.1105 5.5153 -7.0308 43 1 2.8219 5.0376 -6.9242 44 1 2.4040 3.1848 -8.5183 45 1 0.6927 3.6627 -8.6250 46 1 1.8030 3.7729 -11.0784 47 1 2.2629 5.3303 -11.5096 48 1 0.6503 5.1001 -4.6270 49 1 2.3947 4.7963 -4.4425 50 1 0.1560 2.8417 -3.7445 51 1 1.1263 3.7737 -2.5792 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347940277.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:26 Heat of formation + Delta-G solvation = -118.417481 kcal Electronic energy + Delta-G solvation = -28245.808660 eV Core-core repulsion = 24370.967715 eV Total energy + Delta-G solvation = -3874.840945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.06532 -40.51583 -39.47840 -36.92531 -35.99607 -34.88813 -34.58986 -32.29191 -31.73594 -31.45933 -29.66453 -27.98472 -25.87595 -24.61617 -24.05537 -23.84952 -22.45949 -21.08121 -20.57701 -19.83334 -18.61258 -18.15719 -17.91121 -17.60924 -17.27902 -16.59796 -16.49786 -16.45926 -15.89569 -15.58444 -15.23498 -14.99050 -14.87772 -14.65782 -14.58270 -14.31253 -14.12077 -13.74842 -13.54491 -13.39051 -13.27600 -13.09196 -13.00284 -12.84727 -12.66725 -12.48655 -12.41885 -12.15568 -12.08528 -11.97328 -11.85608 -11.67332 -11.49333 -11.23247 -11.05275 -10.92953 -10.65077 -10.59521 -10.41703 -9.39598 -9.11088 -8.22061 -6.36722 1.34769 1.38068 1.49658 1.71994 1.92492 2.27177 2.42363 2.71047 3.05862 3.07437 3.73083 3.80899 3.86137 3.91796 4.09428 4.14835 4.24180 4.33218 4.35146 4.40355 4.46242 4.53629 4.56410 4.64143 4.65636 4.72223 4.76597 4.84582 4.93680 4.95967 4.99714 5.04259 5.06508 5.10779 5.21551 5.23397 5.25842 5.32277 5.39400 5.41619 5.59731 5.61896 5.89028 5.95414 6.07756 6.08994 6.30816 6.54568 6.72497 6.88415 7.30012 7.43342 7.59804 8.84899 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.018547 B = 0.002319 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.337315 B =12070.874982 C =12848.451724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.608 5.608 4 C 0.265 3.735 5 C -0.538 4.538 6 H 0.053 0.947 7 C 0.004 3.996 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.493 3.507 14 O -0.581 6.581 15 C 0.054 3.946 16 N -0.547 5.547 17 C 0.056 3.944 18 C -0.109 4.109 19 C -0.076 4.076 20 C -0.095 4.095 21 C -0.133 4.133 22 C 0.507 3.493 23 N -0.840 5.840 24 O -0.604 6.604 25 C -0.108 4.108 26 C 0.061 3.939 27 H 0.096 0.904 28 H 0.036 0.964 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.071 0.929 32 H -0.008 1.008 33 H 0.020 0.980 34 H 0.266 0.734 35 H 0.120 0.880 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.054 0.946 39 H 0.104 0.896 40 H 0.050 0.950 41 H 0.091 0.909 42 H 0.053 0.947 43 H 0.044 0.956 44 H 0.121 0.879 45 H 0.124 0.876 46 H 0.420 0.580 47 H 0.403 0.597 48 H 0.067 0.933 49 H 0.042 0.958 50 H 0.044 0.956 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.763 -10.464 -28.522 31.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.340 5.340 4 C 0.143 3.857 5 C -0.577 4.577 6 H 0.071 0.929 7 C -0.195 4.195 8 N -0.570 5.570 9 Si 0.793 3.207 10 H -0.190 1.190 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.282 3.718 14 O -0.460 6.460 15 C -0.077 4.077 16 N -0.273 5.273 17 C -0.071 4.071 18 C -0.147 4.147 19 C -0.094 4.094 20 C -0.133 4.133 21 C -0.173 4.173 22 C 0.293 3.707 23 N -0.404 5.404 24 O -0.485 6.485 25 C -0.146 4.146 26 C -0.066 4.066 27 H 0.115 0.885 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.089 0.911 32 H 0.010 0.990 33 H 0.038 0.962 34 H 0.075 0.925 35 H 0.138 0.862 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.072 0.928 39 H 0.122 0.878 40 H 0.068 0.932 41 H 0.109 0.891 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.139 0.861 45 H 0.142 0.858 46 H 0.251 0.749 47 H 0.233 0.767 48 H 0.085 0.915 49 H 0.060 0.940 50 H 0.062 0.938 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.964 -8.921 -27.929 30.381 hybrid contribution 0.248 0.248 0.731 0.811 sum -7.716 -8.673 -27.198 29.572 Atomic orbital electron populations 1.22146 0.94727 1.03452 1.01436 1.21727 0.95167 0.81405 1.03894 1.48316 1.64358 1.15162 1.06157 1.18636 0.95164 0.91319 0.80587 1.21747 0.97917 1.31719 1.06318 0.92915 1.25893 1.02454 0.94564 0.96548 1.70064 1.37707 1.34325 1.14879 0.85358 0.78999 0.77954 0.78431 1.19049 1.20960 1.19262 1.21326 0.77347 0.86749 0.86402 1.90633 1.47003 1.20614 1.87795 1.21955 1.03117 0.94939 0.87647 1.61437 1.49596 1.13410 1.02853 1.22234 1.01446 0.96272 0.87123 1.21721 0.98464 0.95962 0.98521 1.21164 1.00209 0.95418 0.92631 1.21269 1.01341 0.97580 0.93140 1.21745 1.06149 0.97823 0.91566 1.21341 0.75199 0.88796 0.85327 1.43803 1.71818 1.17916 1.06873 1.90754 1.50645 1.24107 1.83036 1.21558 1.01127 0.97243 0.94640 1.22009 0.91996 0.93404 0.99237 0.88493 0.94524 0.92379 0.88086 0.91088 0.98996 0.96200 0.92486 0.86248 0.89837 0.89685 0.92825 0.87779 0.93151 0.89106 0.92866 0.93687 0.86063 0.85822 0.74882 0.76662 0.91463 0.93951 0.93776 0.93798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 10.18 71.98 0.73 -3.15 16 2 C 0.10 3.03 5.85 86.38 0.50 3.53 16 3 N -0.61 -26.23 2.46 -826.12 -2.03 -28.25 16 4 C 0.26 14.73 5.16 85.63 0.44 15.17 16 5 C -0.54 -31.97 9.39 25.60 0.24 -31.73 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.00 0.24 5.46 84.66 0.46 0.70 16 8 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 9 Si 0.97 46.28 29.54 68.60 2.03 48.31 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 C 0.49 21.09 7.20 87.66 0.63 21.72 16 14 O -0.58 -31.50 14.29 -3.04 -0.04 -31.54 16 15 C 0.05 1.54 3.92 85.56 0.33 1.87 16 16 N -0.55 -15.50 4.35 -900.93 -3.92 -19.42 16 17 C 0.06 1.00 5.46 86.33 0.47 1.47 16 18 C -0.11 -1.70 5.08 30.65 0.16 -1.55 16 19 C -0.08 -1.28 2.25 -10.71 -0.02 -1.30 16 20 C -0.10 -1.68 3.98 30.60 0.12 -1.56 16 21 C -0.13 -1.29 5.46 29.85 0.16 -1.12 16 22 C 0.51 7.84 8.10 87.66 0.71 8.55 16 23 N -0.84 -5.50 8.87 -173.53 -1.54 -7.04 16 24 O -0.60 -16.69 16.82 -3.04 -0.05 -16.74 16 25 C -0.11 -2.77 5.38 30.64 0.16 -2.60 16 26 C 0.06 1.79 5.12 86.32 0.44 2.23 16 27 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.31 7.12 -2.39 -0.02 1.29 16 30 H 0.10 2.27 6.61 -2.39 -0.02 2.26 16 31 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 32 H -0.01 -0.53 7.42 -2.39 -0.02 -0.54 16 33 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 34 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 35 H 0.12 2.84 7.55 -2.39 -0.02 2.82 16 36 H 0.08 1.87 6.83 -2.39 -0.02 1.86 16 37 H 0.08 1.34 8.01 -2.39 -0.02 1.32 16 38 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.10 0.83 6.71 -2.39 -0.02 0.81 16 40 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.05 1.11 8.10 -2.38 -0.02 1.09 16 43 H 0.04 1.04 8.10 -2.39 -0.02 1.02 16 44 H 0.12 0.59 6.64 -2.39 -0.02 0.58 16 45 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.42 -0.45 8.83 -92.71 -0.82 -1.27 16 47 H 0.40 2.50 8.93 -92.71 -0.83 1.67 16 48 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 51 H 0.04 1.70 6.05 -2.39 -0.01 1.69 16 Total: -1.00 -89.50 401.34 -0.44 -89.94 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -0.72 Total: 10.05 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 5.55 Total: 12.24 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -7.20 Total: -112.26 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: -0.09 Total: -48.28 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -89.50 -0.44 -89.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347940277.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.477 kcal (2) G-P(sol) polarization free energy of solvation -89.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds