Wall clock time and date at job start Fri Apr 10 2020 18:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47469 * 2 1 4 4 C 1.34773 * 120.00321 * 180.02562 * 3 2 1 5 5 O 1.21282 * 119.99791 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99932 * 180.02562 * 4 3 2 7 7 C 1.53006 * 109.46801 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.46688 * 179.97438 * 7 6 4 9 9 C 1.50697 * 109.46949 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99966 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00266 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00231 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46914 * 179.97438 * 12 11 9 14 14 C 1.53350 * 109.41773 * 295.12314 * 13 12 11 15 15 C 1.53198 * 109.14641 * 178.67869 * 14 13 12 16 16 N 1.46925 * 108.89335 * 54.57862 * 15 14 13 17 17 C 1.36931 * 120.63201 * 126.29969 * 16 15 14 18 18 H 1.08005 * 119.99889 * 331.83485 * 17 16 15 19 19 C 1.38813 * 120.00220 * 151.82683 * 17 16 15 20 20 N 1.31618 * 120.00004 * 343.08678 * 19 17 16 21 21 Si 1.86806 * 119.99953 * 163.08567 * 19 17 16 22 22 H 1.48496 * 109.47191 * 90.00149 * 21 19 17 23 23 H 1.48501 * 109.46981 * 210.00196 * 21 19 17 24 24 H 1.48500 * 109.46794 * 329.99854 * 21 19 17 25 25 C 1.46925 * 118.73856 * 306.31536 * 16 15 14 26 26 C 1.53044 * 109.45578 * 174.99670 * 13 12 11 27 27 H 1.08998 * 109.47034 * 59.99816 * 1 2 3 28 28 H 1.08997 * 109.47241 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46684 * 299.99900 * 1 2 3 30 30 H 1.09000 * 109.46684 * 240.00100 * 2 1 3 31 31 H 1.08998 * 109.47034 * 120.00184 * 2 1 3 32 32 H 0.97010 * 119.99908 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.47053 * 59.99670 * 6 4 3 34 34 H 1.08999 * 109.46735 * 299.99873 * 6 4 3 35 35 H 1.09000 * 109.46995 * 59.99864 * 7 6 4 36 36 H 1.08998 * 109.47000 * 299.99778 * 7 6 4 37 37 H 1.09000 * 109.47014 * 59.99884 * 8 7 6 38 38 H 1.08998 * 109.47314 * 299.99703 * 8 7 6 39 39 H 0.97000 * 119.99583 * 359.97438 * 11 9 8 40 40 H 1.09000 * 109.47093 * 59.99701 * 12 11 9 41 41 H 1.08998 * 109.46676 * 299.99753 * 12 11 9 42 42 H 1.08997 * 109.45943 * 55.02788 * 13 12 11 43 43 H 1.08996 * 109.68537 * 58.71633 * 14 13 12 44 44 H 1.09000 * 109.47180 * 298.51549 * 14 13 12 45 45 H 1.08997 * 109.58387 * 294.71773 * 15 14 13 46 46 H 1.08993 * 109.58533 * 174.43928 * 15 14 13 47 47 H 0.96996 * 119.99787 * 179.97438 * 20 19 17 48 48 H 1.08998 * 109.58495 * 173.39541 * 25 16 15 49 49 H 1.09000 * 109.58924 * 293.68296 * 25 16 15 50 50 H 1.08996 * 109.49900 * 61.43384 * 26 13 12 51 51 H 1.08999 * 109.52516 * 301.35224 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 -0.0005 5 8 4.1316 0.7056 -0.0005 6 6 3.8458 3.0483 0.0001 7 6 5.3759 3.0482 -0.0001 8 6 5.8858 4.4907 -0.0001 9 6 7.3928 4.4907 0.0004 10 8 7.9992 3.4404 0.0003 11 7 8.0667 5.6579 -0.0001 12 6 9.5318 5.6579 -0.0001 13 6 10.0417 7.1004 -0.0014 14 6 9.6327 7.7847 -1.3114 15 6 10.1175 9.2377 -1.2920 16 7 11.5625 9.2536 -1.0266 17 6 12.4190 9.9130 -1.8672 18 1 12.1678 10.0300 -2.9111 19 6 13.6102 10.4311 -1.3777 20 7 13.7748 10.5916 -0.0817 21 14 14.9796 10.9006 -2.5583 22 1 14.8178 12.3197 -2.9649 23 1 16.2930 10.7243 -1.8882 24 1 14.9165 10.0310 -3.7604 25 6 12.0711 8.5483 0.1577 26 6 11.5670 7.1020 0.1244 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.3881 2.1186 -0.0004 33 1 3.4829 3.5616 0.8905 34 1 3.4820 3.5626 -0.8895 35 1 5.7391 2.5347 -0.8903 36 1 5.7392 2.5340 0.8897 37 1 5.5225 5.0045 0.8899 38 1 5.5225 5.0046 -0.8901 39 1 7.5817 6.4979 -0.0011 40 1 9.8950 5.1437 -0.8899 41 1 9.8950 5.1444 0.8900 42 1 9.6074 7.6398 0.8403 43 1 8.5476 7.7645 -1.4129 44 1 10.0870 7.2607 -2.1523 45 1 9.5959 9.7865 -0.5079 46 1 9.9182 9.7023 -2.2576 47 1 14.6072 10.9533 0.2603 48 1 13.1610 8.5556 0.1473 49 1 11.7108 9.0423 1.0600 50 1 12.0030 6.5843 -0.7299 51 1 11.8572 6.5943 1.0443 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362405299.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:56 Heat of formation + Delta-G solvation = -85.255491 kcal Electronic energy + Delta-G solvation = -26879.038465 eV Core-core repulsion = 23005.635532 eV Total energy + Delta-G solvation = -3873.402933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.16878 -39.64801 -37.81846 -35.81620 -35.00502 -34.39812 -32.83313 -31.30074 -30.79659 -29.76971 -28.79954 -26.64076 -24.30339 -23.56316 -22.45101 -22.06750 -21.01000 -20.67512 -20.26001 -19.08736 -17.61666 -16.92642 -16.63989 -16.52795 -16.22653 -15.76180 -15.70596 -14.96339 -14.79776 -14.21366 -14.16847 -13.85047 -13.56254 -13.51778 -13.33307 -13.16158 -13.12061 -12.48727 -12.41766 -12.36076 -12.23211 -12.12878 -11.94428 -11.77680 -11.70968 -11.32837 -11.02777 -10.98498 -10.70557 -10.50574 -10.24954 -10.21962 -10.20686 -9.96855 -9.79380 -9.53728 -9.50888 -9.41063 -8.93917 -8.46289 -6.66217 -5.78722 -3.20984 2.31645 2.68563 2.74007 3.28357 3.37655 3.44960 3.47569 4.28745 4.47599 4.50222 4.56035 4.57708 4.69121 4.77920 4.81379 5.07195 5.10842 5.17223 5.22865 5.25565 5.31560 5.38606 5.38716 5.38988 5.43082 5.52962 5.61886 5.86822 5.88909 5.96776 5.98201 6.06116 6.15963 6.17870 6.32632 6.44408 6.50715 6.60971 6.70290 6.77154 6.81851 6.98134 7.06440 7.37653 7.56580 7.66562 7.79846 7.87218 8.28306 8.45869 9.22058 9.85693 10.42365 11.29844 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.045310 B = 0.001549 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.819430 B =18072.309888 C =18246.235793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.112 3.888 3 N -0.737 5.737 4 C 0.509 3.491 5 O -0.533 6.533 6 C -0.141 4.141 7 C -0.089 4.089 8 C -0.141 4.141 9 C 0.507 3.493 10 O -0.542 6.542 11 N -0.727 5.727 12 C 0.122 3.878 13 C -0.090 4.090 14 C -0.127 4.127 15 C 0.145 3.855 16 N -0.592 5.592 17 C -0.253 4.253 18 H 0.064 0.936 19 C 0.003 3.997 20 N -0.903 5.903 21 Si 0.901 3.099 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.172 3.828 26 C -0.133 4.133 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.400 0.600 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.400 0.600 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.047 0.953 44 H 0.059 0.941 45 H 0.016 0.984 46 H 0.052 0.948 47 H 0.253 0.747 48 H 0.087 0.913 49 H 0.017 0.983 50 H 0.057 0.943 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.133 -14.094 2.015 30.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.391 5.391 4 C 0.296 3.704 5 O -0.409 6.409 6 C -0.181 4.181 7 C -0.128 4.128 8 C -0.181 4.181 9 C 0.293 3.707 10 O -0.419 6.419 11 N -0.379 5.379 12 C -0.001 4.001 13 C -0.109 4.109 14 C -0.166 4.166 15 C 0.019 3.981 16 N -0.315 5.315 17 C -0.383 4.383 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.548 5.548 21 Si 0.731 3.269 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.205 1.205 25 C 0.046 3.954 26 C -0.173 4.173 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.234 0.766 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.234 0.766 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.034 0.966 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.106 0.894 49 H 0.036 0.964 50 H 0.076 0.924 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -25.945 -15.466 2.094 30.277 hybrid contribution 0.110 1.115 -0.518 1.234 sum -25.834 -14.351 1.576 29.595 Atomic orbital electron populations 1.22005 0.94413 1.03314 1.02509 1.21296 0.94215 0.83177 1.02475 1.46122 1.07343 1.08903 1.76721 1.20818 0.81962 0.92012 0.75612 1.90753 1.55193 1.46602 1.48362 1.21710 0.98273 0.93609 1.04475 1.21070 0.91641 0.94815 1.05259 1.21683 0.92591 0.99500 1.04374 1.20639 0.90083 0.83794 0.76197 1.90727 1.70522 1.31336 1.49300 1.46139 1.08092 1.08428 1.75208 1.21568 0.78514 0.98139 1.01857 1.21360 0.97828 0.92962 0.98704 1.22127 0.98393 0.99280 0.96809 1.20885 0.86430 0.92435 0.98397 1.44037 1.00220 1.58961 1.28278 1.19173 0.99659 1.29223 0.90203 0.91802 1.25034 1.00140 0.98697 0.95716 1.70027 1.25547 1.47867 1.11322 0.86324 0.81855 0.78304 0.80454 1.21417 1.21541 1.20491 1.20761 1.00255 0.86073 0.88323 1.22175 0.93040 1.01644 1.00432 0.91953 0.90770 0.91955 0.91527 0.91531 0.76582 0.88724 0.88704 0.90352 0.90368 0.88891 0.88834 0.76588 0.91716 0.91907 0.91370 0.93448 0.92213 0.96650 0.92948 0.93650 0.89450 0.96446 0.92402 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.46 10.03 37.16 0.37 -0.09 16 2 C 0.11 0.63 6.39 -4.04 -0.03 0.61 16 3 N -0.74 -4.17 5.56 -60.29 -0.33 -4.51 16 4 C 0.51 4.49 7.83 -10.99 -0.09 4.41 16 5 O -0.53 -7.40 15.98 5.56 0.09 -7.31 16 6 C -0.14 -0.83 5.70 -27.88 -0.16 -0.99 16 7 C -0.09 -0.84 3.79 -26.73 -0.10 -0.95 16 8 C -0.14 -1.11 5.70 -27.88 -0.16 -1.27 16 9 C 0.51 6.39 7.83 -10.99 -0.09 6.31 16 10 O -0.54 -9.38 15.98 5.56 0.09 -9.29 16 11 N -0.73 -8.56 5.27 -60.29 -0.32 -8.88 16 12 C 0.12 1.75 5.07 -4.04 -0.02 1.73 16 13 C -0.09 -1.40 2.19 -90.42 -0.20 -1.60 16 14 C -0.13 -2.05 5.27 -26.45 -0.14 -2.19 16 15 C 0.15 2.92 6.50 -3.71 -0.02 2.90 16 16 N -0.59 -14.60 2.99 -172.32 -0.52 -15.12 16 17 C -0.25 -6.91 9.58 -15.06 -0.14 -7.06 16 18 H 0.06 1.72 7.89 -52.48 -0.41 1.30 16 19 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 20 N -0.90 -26.10 11.20 55.49 0.62 -25.48 16 21 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 25 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 26 C -0.13 -2.48 5.36 -26.61 -0.14 -2.62 16 27 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.40 1.00 8.47 -40.82 -0.35 0.65 16 33 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 36 H 0.08 0.92 8.06 -51.93 -0.42 0.50 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.40 3.70 7.65 -40.82 -0.31 3.38 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.62 7.16 -51.93 -0.37 0.25 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.09 2.32 6.06 -51.93 -0.31 2.00 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 50 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 51 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 407.36 15.07 6.14 6.14 Total: -1.00 -35.64 407.36 -9.61 -45.25 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -9.33 Total: -0.60 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -1.02 Total: 3.19 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.55 Total: -53.98 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.18 Total: -16.60 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.64 -9.61 -45.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362405299.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.010 kcal (2) G-P(sol) polarization free energy of solvation -35.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds