Wall clock time and date at job start Fri Apr 10 2020 18:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46846 * 111.00262 * 2 1 4 4 C 1.53029 * 109.52529 * 185.84037 * 3 2 1 5 5 C 1.53116 * 109.28031 * 300.82666 * 4 3 2 6 6 C 1.53003 * 109.52676 * 177.55968 * 5 4 3 7 7 C 1.50700 * 109.47608 * 174.99683 * 6 5 4 8 8 O 1.21288 * 119.99644 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00118 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99778 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.45013 * 324.96434 * 10 9 7 12 12 C 1.53042 * 109.46084 * 84.93322 * 10 9 7 13 13 C 1.52761 * 109.38545 * 181.25723 * 12 10 9 14 14 N 1.46926 * 109.00676 * 305.59232 * 13 12 10 15 15 C 1.36935 * 120.62679 * 233.57816 * 14 13 12 16 16 H 1.08007 * 120.00125 * 151.86114 * 15 14 13 17 17 C 1.38814 * 120.00295 * 331.86126 * 15 14 13 18 18 N 1.31616 * 119.99756 * 343.00020 * 17 15 14 19 19 Si 1.86800 * 120.00150 * 162.72161 * 17 15 14 20 20 H 1.48499 * 109.47120 * 266.51728 * 19 17 15 21 21 H 1.48500 * 109.47186 * 26.51827 * 19 17 15 22 22 H 1.48496 * 109.47113 * 146.51645 * 19 17 15 23 23 C 1.46924 * 118.74247 * 53.30926 * 14 13 12 24 24 C 1.53041 * 109.46024 * 205.00084 * 10 9 7 25 25 H 1.09001 * 109.52480 * 298.58685 * 24 10 9 26 26 O 1.42901 * 109.49508 * 58.66520 * 24 10 9 27 27 C 1.53120 * 109.16388 * 57.65061 * 5 4 3 28 28 C 1.46849 * 111.00189 * 124.21436 * 2 1 3 29 29 H 1.09001 * 109.47259 * 59.99467 * 1 2 3 30 30 H 1.08999 * 109.47567 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46525 * 299.99896 * 1 2 3 32 32 H 1.09005 * 109.45833 * 65.82426 * 3 2 1 33 33 H 1.08998 * 109.46341 * 305.85997 * 3 2 1 34 34 H 1.09000 * 109.50836 * 180.87925 * 4 3 2 35 35 H 1.09006 * 109.53305 * 60.78292 * 4 3 2 36 36 H 1.09005 * 109.52008 * 297.67922 * 5 4 3 37 37 H 1.09002 * 109.47048 * 54.99675 * 6 5 4 38 38 H 1.09000 * 109.46874 * 295.00096 * 6 5 4 39 39 H 0.96994 * 120.00237 * 0.02562 * 9 7 6 40 40 H 1.09000 * 109.49545 * 301.33866 * 12 10 9 41 41 H 1.09003 * 109.49215 * 61.40028 * 12 10 9 42 42 H 1.08996 * 109.51199 * 185.70744 * 13 12 10 43 43 H 1.09004 * 109.43117 * 65.42487 * 13 12 10 44 44 H 0.97007 * 119.99844 * 179.72804 * 18 17 15 45 45 H 1.08999 * 109.58753 * 66.42971 * 23 14 13 46 46 H 1.09001 * 109.58978 * 186.71321 * 23 14 13 47 47 H 0.96704 * 113.99593 * 179.84371 * 26 24 10 48 48 H 1.08997 * 109.50107 * 62.29034 * 27 5 4 49 49 H 1.08996 * 109.50566 * 182.40816 * 27 5 4 50 50 H 1.08997 * 109.45899 * 294.17529 * 28 2 1 51 51 H 1.09005 * 109.45788 * 54.14235 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 -0.1468 5 6 4.1188 0.5368 1.0142 6 6 5.6361 0.4447 0.8404 7 6 6.2396 -0.2326 2.0438 8 8 5.5263 -0.6046 2.9514 9 7 7.5718 -0.4249 2.1114 10 6 8.1583 -1.0839 3.2810 11 1 7.5998 -0.8030 4.1739 12 6 8.0947 -2.6018 3.0963 13 6 8.6781 -3.2875 4.3304 14 7 10.0295 -2.7650 4.5743 15 6 11.0949 -3.6163 4.6976 16 1 12.0861 -3.2837 4.4264 17 6 10.9012 -4.9067 5.1712 18 7 9.7915 -5.2140 5.8088 19 14 12.2120 -6.2090 4.8967 20 1 11.9069 -6.9643 3.6550 21 1 13.5390 -5.5556 4.7652 22 1 12.2320 -7.1423 6.0515 23 6 10.2169 -1.3114 4.6775 24 6 9.6171 -0.6475 3.4340 25 1 10.1821 -0.9495 2.5520 26 8 9.6776 0.7732 3.5757 27 6 3.5181 -0.8716 1.0207 28 6 1.9953 -0.7709 1.1337 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.7325 1.8608 0.9376 33 1 1.5635 1.9257 -0.8329 34 1 3.9100 2.3511 -0.1311 35 1 3.7819 0.8571 -1.0907 36 1 3.8898 1.0359 1.9558 37 1 6.0520 1.4474 0.7412 38 1 5.8648 -0.1336 -0.0548 39 1 8.1423 -0.1271 1.3857 40 1 7.0573 -2.9090 2.9641 41 1 8.6732 -2.8857 2.2172 42 1 8.7275 -4.3630 4.1601 43 1 8.0451 -3.0808 5.1934 44 1 9.6544 -6.1167 6.1362 45 1 9.7120 -0.9402 5.5693 46 1 11.2811 -1.0835 4.7386 47 1 10.5743 1.1202 3.6797 48 1 3.7813 -1.3837 0.0952 49 1 3.9099 -1.4305 1.8705 50 1 1.7325 -0.2710 2.0659 51 1 1.5634 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090625959.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:36 Heat of formation + Delta-G solvation = -74.200001 kcal Electronic energy + Delta-G solvation = -28837.598835 eV Core-core repulsion = 24964.675303 eV Total energy + Delta-G solvation = -3872.923531 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.09277 -38.97614 -37.84656 -35.42144 -34.66108 -34.13412 -31.98466 -30.95578 -30.33356 -29.29080 -28.39838 -25.86895 -24.79949 -23.30166 -22.62258 -22.22276 -21.55696 -20.08690 -19.79618 -19.34824 -17.25799 -16.72653 -16.51881 -16.03606 -15.78864 -15.32420 -15.15705 -14.88085 -14.69851 -14.37370 -13.93827 -13.92116 -13.64719 -13.35178 -13.12923 -12.93922 -12.75449 -12.56564 -12.35723 -12.27161 -12.14187 -11.81807 -11.62375 -11.57414 -11.29327 -11.10379 -10.89559 -10.77675 -10.67262 -10.60366 -10.38656 -10.31602 -10.23733 -9.95749 -9.75811 -9.65516 -9.28934 -8.70381 -8.53984 -8.44371 -6.78123 -5.85713 -3.30420 2.91999 3.33541 3.40694 3.42289 3.44582 3.74670 4.36210 4.51076 4.57515 4.65296 4.70061 4.90356 5.05302 5.10636 5.18441 5.28975 5.30973 5.33224 5.36469 5.40384 5.43606 5.48785 5.51471 5.56837 5.59929 5.65035 5.75227 5.77364 5.81794 5.89610 5.97477 6.00577 6.12594 6.27988 6.34231 6.40356 6.48268 6.55024 6.66987 6.76908 6.86156 6.89817 6.92502 7.28876 7.59853 7.72057 7.81253 7.90959 8.36775 8.53568 9.12269 9.74592 10.30601 11.22795 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.002534 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.390540 B =11046.789174 C =11996.461676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.057 3.943 4 C -0.113 4.113 5 C -0.071 4.071 6 C -0.136 4.136 7 C 0.510 3.490 8 O -0.541 6.541 9 N -0.718 5.718 10 C 0.163 3.837 11 H 0.086 0.914 12 C -0.145 4.145 13 C 0.171 3.829 14 N -0.588 5.588 15 C -0.260 4.260 16 H 0.067 0.933 17 C 0.005 3.995 18 N -0.899 5.899 19 Si 0.905 3.095 20 H -0.287 1.287 21 H -0.278 1.278 22 H -0.290 1.290 23 C 0.121 3.879 24 C 0.080 3.920 25 H 0.055 0.945 26 O -0.571 6.571 27 C -0.117 4.117 28 C 0.057 3.943 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.023 0.977 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.395 0.605 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.092 0.908 43 H 0.023 0.977 44 H 0.256 0.744 45 H 0.028 0.972 46 H 0.059 0.941 47 H 0.373 0.627 48 H 0.064 0.936 49 H 0.090 0.910 50 H 0.033 0.967 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.582 13.487 -13.418 22.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.270 5.270 3 C -0.071 4.071 4 C -0.150 4.150 5 C -0.090 4.090 6 C -0.176 4.176 7 C 0.297 3.703 8 O -0.418 6.418 9 N -0.368 5.368 10 C 0.059 3.941 11 H 0.104 0.896 12 C -0.186 4.186 13 C 0.045 3.955 14 N -0.312 5.312 15 C -0.389 4.389 16 H 0.085 0.915 17 C -0.194 4.194 18 N -0.542 5.542 19 Si 0.734 3.266 20 H -0.214 1.214 21 H -0.204 1.204 22 H -0.217 1.217 23 C -0.007 4.007 24 C 0.019 3.981 25 H 0.073 0.927 26 O -0.376 6.376 27 C -0.154 4.154 28 C -0.070 4.070 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.228 0.772 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.110 0.890 43 H 0.041 0.959 44 H 0.066 0.934 45 H 0.046 0.954 46 H 0.078 0.922 47 H 0.220 0.780 48 H 0.082 0.918 49 H 0.108 0.892 50 H 0.051 0.949 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.626 12.768 -13.142 22.252 hybrid contribution 1.285 -0.125 0.339 1.334 sum -11.341 12.643 -12.804 21.270 Atomic orbital electron populations 1.22344 0.87610 1.02025 1.00382 1.61968 1.07300 1.13732 1.43987 1.22060 0.95636 0.89188 1.00238 1.21663 0.94221 0.99998 0.99150 1.20932 0.92326 0.97004 0.98763 1.21729 0.96697 1.01850 0.97295 1.20599 0.82278 0.79086 0.88380 1.90667 1.60258 1.51146 1.39746 1.46131 1.07276 1.60724 1.22654 1.20965 0.91820 0.92691 0.88635 0.89579 1.22516 1.00833 0.93145 1.02065 1.20735 0.84187 0.99215 0.91375 1.44028 1.05122 0.99083 1.82980 1.19173 0.88536 0.93537 1.37645 0.91530 1.25085 0.97530 0.99343 0.97474 1.70043 1.26575 1.19474 1.38112 0.86247 0.81189 0.81708 0.77425 1.21360 1.20365 1.21685 1.21525 0.98526 0.86664 0.93971 1.22778 0.95799 0.79877 0.99665 0.92667 1.86481 1.32995 1.21661 1.96427 1.21772 0.93551 0.96760 1.03343 1.22102 0.96144 0.97850 0.90946 0.91559 0.91409 0.95840 0.94992 0.90959 0.91528 0.90991 0.90706 0.89196 0.89079 0.77188 0.91928 0.92465 0.88952 0.95899 0.93439 0.95378 0.92209 0.78050 0.91759 0.89156 0.94871 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.59 60.07 0.58 0.78 16 2 N -0.55 -5.42 4.91 -242.97 -1.19 -6.61 16 3 C 0.06 0.50 5.46 -3.84 -0.02 0.48 16 4 C -0.11 -0.97 5.38 -26.66 -0.14 -1.11 16 5 C -0.07 -0.77 1.90 -90.50 -0.17 -0.94 16 6 C -0.14 -1.40 5.18 -27.88 -0.14 -1.55 16 7 C 0.51 7.49 7.53 -10.99 -0.08 7.40 16 8 O -0.54 -9.98 13.66 5.55 0.08 -9.90 16 9 N -0.72 -10.42 4.92 -53.77 -0.26 -10.69 16 10 C 0.16 2.91 2.12 -67.89 -0.14 2.77 16 11 H 0.09 1.80 7.58 -51.93 -0.39 1.40 16 12 C -0.15 -2.85 5.63 -26.83 -0.15 -3.00 16 13 C 0.17 4.09 5.28 -3.93 -0.02 4.07 16 14 N -0.59 -14.39 3.00 -172.58 -0.52 -14.90 16 15 C -0.26 -6.92 9.58 -15.06 -0.14 -7.07 16 16 H 0.07 1.73 7.89 -52.48 -0.41 1.31 16 17 C 0.00 0.14 4.91 -17.43 -0.09 0.05 16 18 N -0.90 -25.84 11.20 55.49 0.62 -25.22 16 19 Si 0.90 21.26 29.59 -169.99 -5.03 16.23 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 C 0.12 2.45 6.14 -3.71 -0.02 2.43 16 24 C 0.08 1.35 3.14 -26.61 -0.08 1.26 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 O -0.57 -8.46 13.16 -35.23 -0.46 -8.92 16 27 C -0.12 -1.38 5.09 -26.65 -0.14 -1.52 16 28 C 0.06 0.62 5.46 -3.84 -0.02 0.60 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 31 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.94 7.95 -51.93 -0.41 0.53 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.40 4.70 8.60 -40.82 -0.35 4.35 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.09 2.45 6.06 -51.93 -0.31 2.14 16 43 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 47 H 0.37 3.95 9.08 45.56 0.41 4.36 16 48 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.09 1.31 6.04 -51.93 -0.31 0.99 16 50 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 LS Contribution 391.89 15.07 5.91 5.91 Total: -1.00 -31.68 391.89 -10.17 -41.86 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -8.51 Total: 7.58 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -0.80 Total: 4.67 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -1.35 Total: -57.42 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.39 Total: -18.82 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.68 -10.17 -41.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090625959.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.344 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds