Wall clock time and date at job start Fri Apr 10 2020 18:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46846 * 111.00262 * 2 1 4 4 C 1.53029 * 109.52529 * 185.84037 * 3 2 1 5 5 C 1.53116 * 109.28031 * 300.82666 * 4 3 2 6 6 C 1.53003 * 109.52676 * 177.55968 * 5 4 3 7 7 C 1.50700 * 109.47608 * 174.99683 * 6 5 4 8 8 O 1.21288 * 119.99644 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00118 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99778 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.45013 * 324.96434 * 10 9 7 12 12 C 1.53042 * 109.46084 * 84.93322 * 10 9 7 13 13 C 1.52761 * 109.38545 * 181.25723 * 12 10 9 14 14 N 1.46926 * 109.00676 * 305.59232 * 13 12 10 15 15 C 1.36935 * 120.62679 * 233.57816 * 14 13 12 16 16 H 1.08007 * 120.00125 * 151.86114 * 15 14 13 17 17 C 1.38814 * 120.00295 * 331.86126 * 15 14 13 18 18 N 1.31616 * 119.99756 * 343.00020 * 17 15 14 19 19 Si 1.86800 * 120.00150 * 162.72161 * 17 15 14 20 20 H 1.48499 * 109.47120 * 266.51728 * 19 17 15 21 21 H 1.48500 * 109.47186 * 26.51827 * 19 17 15 22 22 H 1.48496 * 109.47113 * 146.51645 * 19 17 15 23 23 C 1.46924 * 118.74247 * 53.30926 * 14 13 12 24 24 C 1.53041 * 109.46024 * 205.00084 * 10 9 7 25 25 H 1.09001 * 109.52480 * 298.58685 * 24 10 9 26 26 O 1.42901 * 109.49508 * 58.66520 * 24 10 9 27 27 C 1.53120 * 109.16388 * 57.65061 * 5 4 3 28 28 C 1.46849 * 111.00189 * 124.21436 * 2 1 3 29 29 H 1.09001 * 109.47259 * 59.99467 * 1 2 3 30 30 H 1.08999 * 109.47567 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46525 * 299.99896 * 1 2 3 32 32 H 1.09005 * 109.45833 * 65.82426 * 3 2 1 33 33 H 1.08998 * 109.46341 * 305.85997 * 3 2 1 34 34 H 1.09000 * 109.50836 * 180.87925 * 4 3 2 35 35 H 1.09006 * 109.53305 * 60.78292 * 4 3 2 36 36 H 1.09005 * 109.52008 * 297.67922 * 5 4 3 37 37 H 1.09002 * 109.47048 * 54.99675 * 6 5 4 38 38 H 1.09000 * 109.46874 * 295.00096 * 6 5 4 39 39 H 0.96994 * 120.00237 * 0.02562 * 9 7 6 40 40 H 1.09000 * 109.49545 * 301.33866 * 12 10 9 41 41 H 1.09003 * 109.49215 * 61.40028 * 12 10 9 42 42 H 1.08996 * 109.51199 * 185.70744 * 13 12 10 43 43 H 1.09004 * 109.43117 * 65.42487 * 13 12 10 44 44 H 0.97007 * 119.99844 * 179.72804 * 18 17 15 45 45 H 1.08999 * 109.58753 * 66.42971 * 23 14 13 46 46 H 1.09001 * 109.58978 * 186.71321 * 23 14 13 47 47 H 0.96704 * 113.99593 * 179.84371 * 26 24 10 48 48 H 1.08997 * 109.50107 * 62.29034 * 27 5 4 49 49 H 1.08996 * 109.50566 * 182.40816 * 27 5 4 50 50 H 1.08997 * 109.45899 * 294.17529 * 28 2 1 51 51 H 1.09005 * 109.45788 * 54.14235 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 -0.1468 5 6 4.1188 0.5368 1.0142 6 6 5.6361 0.4447 0.8404 7 6 6.2396 -0.2326 2.0438 8 8 5.5263 -0.6046 2.9514 9 7 7.5718 -0.4249 2.1114 10 6 8.1583 -1.0839 3.2810 11 1 7.5998 -0.8030 4.1739 12 6 8.0947 -2.6018 3.0963 13 6 8.6781 -3.2875 4.3304 14 7 10.0295 -2.7650 4.5743 15 6 11.0949 -3.6163 4.6976 16 1 12.0861 -3.2837 4.4264 17 6 10.9012 -4.9067 5.1712 18 7 9.7915 -5.2140 5.8088 19 14 12.2120 -6.2090 4.8967 20 1 11.9069 -6.9643 3.6550 21 1 13.5390 -5.5556 4.7652 22 1 12.2320 -7.1423 6.0515 23 6 10.2169 -1.3114 4.6775 24 6 9.6171 -0.6475 3.4340 25 1 10.1821 -0.9495 2.5520 26 8 9.6776 0.7732 3.5757 27 6 3.5181 -0.8716 1.0207 28 6 1.9953 -0.7709 1.1337 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.7325 1.8608 0.9376 33 1 1.5635 1.9257 -0.8329 34 1 3.9100 2.3511 -0.1311 35 1 3.7819 0.8571 -1.0907 36 1 3.8898 1.0359 1.9558 37 1 6.0520 1.4474 0.7412 38 1 5.8648 -0.1336 -0.0548 39 1 8.1423 -0.1271 1.3857 40 1 7.0573 -2.9090 2.9641 41 1 8.6732 -2.8857 2.2172 42 1 8.7275 -4.3630 4.1601 43 1 8.0451 -3.0808 5.1934 44 1 9.6544 -6.1167 6.1362 45 1 9.7120 -0.9402 5.5693 46 1 11.2811 -1.0835 4.7386 47 1 10.5743 1.1202 3.6797 48 1 3.7813 -1.3837 0.0952 49 1 3.9099 -1.4305 1.8705 50 1 1.7325 -0.2710 2.0659 51 1 1.5634 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090625959.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:35 Heat of formation + Delta-G solvation = -98.719482 kcal Electronic energy + Delta-G solvation = -28838.662079 eV Core-core repulsion = 24964.675303 eV Total energy + Delta-G solvation = -3873.986776 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.25870 -40.05015 -39.14340 -36.98316 -35.81939 -35.26336 -33.79218 -31.92895 -31.74305 -30.54811 -29.78809 -27.21107 -26.11906 -24.17286 -24.05375 -23.67230 -22.79728 -21.40635 -20.93487 -20.55593 -18.94584 -18.01214 -17.87857 -17.36707 -16.75201 -16.66627 -16.30122 -15.99408 -15.75676 -15.63948 -15.45742 -15.18268 -14.99278 -14.77074 -14.47628 -14.04167 -13.93195 -13.77967 -13.56769 -13.29875 -13.27933 -13.09092 -12.96236 -12.76151 -12.68155 -12.38370 -12.36090 -12.13144 -12.07893 -12.02082 -11.89340 -11.60259 -11.48244 -11.36114 -11.18541 -11.07732 -10.60822 -10.52468 -9.94758 -9.30626 -8.78047 -7.91302 -5.39547 1.47867 1.49230 1.58550 1.76968 2.26018 2.48289 3.01763 3.13075 3.25978 3.62547 3.72769 3.81688 3.86280 3.88981 4.07028 4.11016 4.22407 4.25183 4.34848 4.38610 4.44033 4.52005 4.54496 4.61800 4.67067 4.69136 4.71074 4.80025 4.84043 4.90192 4.93187 4.93768 5.00036 5.01846 5.05779 5.11528 5.13228 5.22613 5.35841 5.36974 5.52026 5.58214 5.60529 5.64452 6.10389 6.16558 6.32586 6.68673 6.88543 7.08356 7.40785 7.76619 8.29536 9.16044 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.002534 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.390540 B =11046.789174 C =11996.461676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.551 5.551 3 C 0.053 3.947 4 C -0.104 4.104 5 C -0.070 4.070 6 C -0.124 4.124 7 C 0.504 3.496 8 O -0.585 6.585 9 N -0.707 5.707 10 C 0.171 3.829 11 H 0.050 0.950 12 C -0.127 4.127 13 C 0.180 3.820 14 N -0.604 5.604 15 C -0.265 4.265 16 H 0.078 0.922 17 C -0.052 4.052 18 N -0.937 5.937 19 Si 0.972 3.028 20 H -0.285 1.285 21 H -0.263 1.263 22 H -0.298 1.298 23 C 0.117 3.883 24 C 0.103 3.897 25 H 0.074 0.926 26 O -0.570 6.570 27 C -0.114 4.114 28 C 0.060 3.940 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.021 0.979 32 H 0.024 0.976 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.413 0.587 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.061 0.939 43 H -0.013 1.013 44 H 0.250 0.750 45 H 0.009 0.991 46 H 0.076 0.924 47 H 0.396 0.604 48 H 0.069 0.931 49 H 0.056 0.944 50 H 0.018 0.982 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.498 15.510 -16.579 25.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.276 5.276 3 C -0.075 4.075 4 C -0.142 4.142 5 C -0.089 4.089 6 C -0.163 4.163 7 C 0.292 3.708 8 O -0.465 6.465 9 N -0.358 5.358 10 C 0.065 3.935 11 H 0.068 0.932 12 C -0.167 4.167 13 C 0.054 3.946 14 N -0.328 5.328 15 C -0.394 4.394 16 H 0.095 0.905 17 C -0.248 4.248 18 N -0.583 5.583 19 Si 0.800 3.200 20 H -0.212 1.212 21 H -0.187 1.187 22 H -0.225 1.225 23 C -0.010 4.010 24 C 0.042 3.958 25 H 0.092 0.908 26 O -0.377 6.377 27 C -0.152 4.152 28 C -0.068 4.068 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.040 0.960 32 H 0.042 0.958 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.250 0.750 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.006 0.994 44 H 0.060 0.940 45 H 0.027 0.973 46 H 0.094 0.906 47 H 0.246 0.754 48 H 0.087 0.913 49 H 0.075 0.925 50 H 0.037 0.963 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.505 14.856 -16.348 24.906 hybrid contribution 0.908 -0.681 1.395 1.798 sum -10.597 14.175 -14.953 23.170 Atomic orbital electron populations 1.22408 0.86546 1.02463 1.01054 1.62005 1.08383 1.14330 1.42914 1.22169 0.96097 0.88646 1.00604 1.21627 0.93768 1.00721 0.98075 1.20899 0.92922 0.96218 0.98831 1.21753 0.95828 1.03170 0.95566 1.21482 0.81862 0.78337 0.89107 1.90670 1.61215 1.52856 1.41771 1.45921 1.07652 1.60256 1.21997 1.20545 0.92544 0.91531 0.88847 0.93168 1.22222 1.00103 0.94400 1.00005 1.20444 0.84212 0.97966 0.92004 1.44242 1.04583 1.00773 1.83237 1.19584 0.89419 0.94002 1.36430 0.90470 1.25918 0.99634 1.01520 0.97700 1.70218 1.28800 1.19468 1.39819 0.85186 0.79300 0.78833 0.76708 1.21152 1.18687 1.22542 1.21706 0.99667 0.84490 0.95134 1.22293 0.94516 0.80811 0.98210 0.90781 1.86452 1.35207 1.19804 1.96279 1.21676 0.94130 0.97391 1.01954 1.22010 0.95781 0.98034 0.90976 0.89967 0.91197 0.95999 0.95818 0.89066 0.89464 0.90139 0.93096 0.86267 0.86575 0.75037 0.92580 0.91222 0.92025 0.99442 0.94047 0.97322 0.90604 0.75432 0.91274 0.92504 0.96331 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.59 127.69 1.22 1.57 16 2 N -0.55 -10.25 4.91 -922.60 -4.53 -14.78 16 3 C 0.05 0.82 5.46 86.32 0.47 1.29 16 4 C -0.10 -1.49 5.38 30.64 0.16 -1.32 16 5 C -0.07 -1.40 1.90 -10.71 -0.02 -1.42 16 6 C -0.12 -2.21 5.18 29.85 0.15 -2.06 16 7 C 0.50 14.30 7.53 87.66 0.66 14.96 16 8 O -0.58 -22.31 13.66 -3.05 -0.04 -22.35 16 9 N -0.71 -19.25 4.92 -442.40 -2.18 -21.43 16 10 C 0.17 6.06 2.12 45.02 0.10 6.16 16 11 H 0.05 2.17 7.58 -2.39 -0.02 2.15 16 12 C -0.13 -5.06 5.63 30.53 0.17 -4.89 16 13 C 0.18 9.04 5.28 86.22 0.45 9.49 16 14 N -0.60 -29.95 3.00 -699.92 -2.10 -32.05 16 15 C -0.26 -14.11 9.58 84.03 0.81 -13.30 16 16 H 0.08 3.89 7.89 -2.91 -0.02 3.87 16 17 C -0.05 -2.89 4.91 84.86 0.42 -2.47 16 18 N -0.94 -56.04 11.20 21.65 0.24 -55.79 16 19 Si 0.97 44.04 29.59 68.60 2.03 46.07 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 22 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 23 C 0.12 4.68 6.14 86.36 0.53 5.21 16 24 C 0.10 3.28 3.14 30.67 0.10 3.37 16 25 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 26 O -0.57 -15.19 13.16 -148.98 -1.96 -17.15 16 27 C -0.11 -2.70 5.09 30.64 0.16 -2.54 16 28 C 0.06 1.33 5.46 86.32 0.47 1.80 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 31 H 0.02 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.02 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.09 1.11 8.12 -2.39 -0.02 1.09 16 34 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.05 1.28 7.95 -2.38 -0.02 1.26 16 37 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.41 8.35 8.60 -92.71 -0.80 7.55 16 40 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.06 3.45 6.06 -2.39 -0.01 3.44 16 43 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 44 H 0.25 14.52 8.31 -92.70 -0.77 13.74 16 45 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.08 2.76 7.93 -2.39 -0.02 2.74 16 47 H 0.40 6.87 9.08 -74.05 -0.67 6.20 16 48 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.06 1.74 6.04 -2.39 -0.01 1.72 16 50 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 51 H 0.07 1.56 8.09 -2.38 -0.02 1.54 16 Total: -1.00 -72.39 391.89 -3.24 -75.62 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: -0.56 Total: 26.01 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 5.85 Total: 15.84 kcal Atomic # 7 Polarization: -115.48 SS G_CDS: -8.56 Total: -124.04 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -2.00 Total: -39.50 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -72.39 -3.24 -75.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090625959.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.095 kcal (2) G-P(sol) polarization free energy of solvation -72.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds