Wall clock time and date at job start Fri Apr 10 2020 18:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46895 * 109.46959 * 2 1 4 4 C 1.47009 * 111.00256 * 313.63256 * 3 2 1 5 5 C 1.53102 * 109.25813 * 177.60906 * 4 3 2 6 6 O 1.43017 * 109.25640 * 56.84980 * 5 4 3 7 7 C 1.43018 * 113.74098 * 301.32711 * 6 5 4 8 8 C 1.47018 * 110.99655 * 189.99601 * 3 2 1 9 9 H 1.09004 * 109.50355 * 62.42012 * 8 3 2 10 10 C 1.50697 * 109.50683 * 302.33082 * 8 3 2 11 11 O 1.21281 * 120.00304 * 359.97438 * 10 8 3 12 12 N 1.34783 * 119.99743 * 180.02562 * 10 8 3 13 13 C 1.46500 * 119.99855 * 179.97438 * 12 10 8 14 14 C 1.52995 * 109.46848 * 179.97438 * 13 12 10 15 15 H 1.09000 * 110.78437 * 56.79084 * 14 13 12 16 16 C 1.54325 * 110.72304 * 293.54475 * 14 13 12 17 17 N 1.47018 * 107.40412 * 219.52316 * 16 14 13 18 18 C 1.36936 * 125.64899 * 178.89496 * 17 16 14 19 19 H 1.07997 * 119.99931 * 0.02562 * 18 17 16 20 20 C 1.38819 * 120.00094 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99956 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99883 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47088 * 60.00291 * 22 20 18 24 24 H 1.48494 * 109.47009 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47347 * 300.00261 * 22 20 18 26 26 C 1.47426 * 108.70517 * 358.86539 * 17 16 14 27 27 C 1.54914 * 104.82992 * 24.12623 * 26 17 16 28 28 H 1.09004 * 111.00278 * 81.10732 * 27 26 17 29 29 C 1.53000 * 111.00205 * 204.91932 * 27 26 17 30 30 H 1.08999 * 109.47556 * 299.99977 * 1 2 3 31 31 H 1.09008 * 109.46706 * 59.99864 * 1 2 3 32 32 H 1.08998 * 109.47422 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47074 * 239.99972 * 2 1 3 34 34 H 1.08994 * 109.46626 * 120.00359 * 2 1 3 35 35 H 1.08995 * 109.50976 * 297.53879 * 4 3 2 36 36 H 1.09001 * 109.50697 * 57.63491 * 4 3 2 37 37 H 1.08997 * 109.50748 * 176.78453 * 5 4 3 38 38 H 1.09001 * 109.50429 * 296.87166 * 5 4 3 39 39 H 1.09003 * 109.50915 * 298.74328 * 7 6 5 40 40 H 1.08994 * 109.50922 * 178.60571 * 7 6 5 41 41 H 0.96999 * 120.00280 * 359.97438 * 12 10 8 42 42 H 1.08999 * 109.47094 * 59.99757 * 13 12 10 43 43 H 1.08997 * 109.47268 * 300.00292 * 13 12 10 44 44 H 1.09002 * 109.88192 * 100.02756 * 16 14 13 45 45 H 1.09000 * 109.88128 * 339.01609 * 16 14 13 46 46 H 0.96998 * 120.00119 * 179.97438 * 21 20 18 47 47 H 1.08999 * 110.36956 * 142.96999 * 26 17 16 48 48 H 1.09003 * 110.36599 * 265.28903 * 26 17 16 49 49 H 1.08997 * 109.47294 * 58.54570 * 29 27 26 50 50 H 1.08997 * 109.47279 * 178.55250 * 29 27 26 51 51 H 1.09006 * 109.47100 * 298.55044 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.3024 2.1974 -0.9933 5 6 1.8009 3.6430 -0.9183 6 8 3.2165 3.6649 -1.1212 7 6 3.9465 2.8844 -0.1708 8 6 3.4696 1.4311 -0.2382 9 1 3.6898 1.0205 -1.2237 10 6 4.1787 0.6194 0.8150 11 8 3.5402 0.0578 1.6798 12 7 5.5226 0.5184 0.7966 13 6 6.2120 -0.2702 1.8208 14 6 7.7208 -0.2217 1.5720 15 1 8.0774 0.8082 1.5567 16 6 8.0808 -0.9438 0.2564 17 7 9.3273 -1.6875 0.4899 18 6 9.9689 -2.4774 -0.4263 19 1 9.5605 -2.5933 -1.4194 20 6 11.1448 -3.1284 -0.0791 21 7 11.6427 -2.9868 1.1310 22 14 12.0203 -4.2055 -1.3292 23 1 12.3985 -3.3869 -2.5092 24 1 13.2425 -4.7834 -0.7150 25 1 11.1158 -5.3026 -1.7572 26 6 9.7726 -1.4415 1.8736 27 6 8.4847 -1.0514 2.6411 28 1 7.9164 -1.9368 2.9260 29 6 8.8144 -0.1971 3.8669 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8932 -0.5139 0.8899 35 1 1.4879 1.7998 -1.9911 36 1 0.2332 2.1691 -0.7831 37 1 1.3132 4.2368 -1.6913 38 1 1.5666 4.0584 0.0618 39 1 3.7752 3.2774 0.8313 40 1 5.0104 2.9295 -0.4033 41 1 6.0334 0.9679 0.1052 42 1 5.8696 -1.3040 1.7750 43 1 5.9924 0.1419 2.8057 44 1 8.2284 -0.2133 -0.5390 45 1 7.2831 -1.6341 -0.0178 46 1 12.4641 -3.4420 1.3738 47 1 10.2083 -2.3458 2.2984 48 1 10.4927 -0.6236 1.9006 49 1 9.3442 0.7017 3.5515 50 1 7.8908 0.0842 4.3728 51 1 9.4431 -0.7686 4.5497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092754427.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:52 Heat of formation + Delta-G solvation = -67.708476 kcal Electronic energy + Delta-G solvation = -28962.429428 eV Core-core repulsion = 25089.787390 eV Total energy + Delta-G solvation = -3872.642037 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.66328 -40.09281 -39.30392 -37.20144 -35.99866 -34.72603 -33.05155 -32.55317 -31.63299 -30.62704 -28.02562 -27.62431 -26.71694 -25.69961 -24.34401 -23.27637 -22.17446 -21.44045 -21.30697 -20.63763 -18.93800 -18.46984 -17.61914 -17.35564 -17.16613 -16.67158 -16.40093 -16.14159 -15.88337 -15.83100 -15.57187 -15.41788 -15.12494 -14.76835 -14.51587 -14.15412 -13.99597 -13.84811 -13.53110 -13.38463 -13.25820 -12.97403 -12.81573 -12.77071 -12.67616 -12.64163 -12.46154 -12.36090 -12.06730 -11.99090 -11.81748 -11.61111 -11.54411 -11.39958 -11.21532 -10.94871 -10.73660 -10.47182 -10.11343 -9.40549 -8.87655 -7.77276 -5.21581 1.45656 1.48481 1.50955 1.54917 1.97011 2.49046 2.64186 2.91961 3.31682 3.58919 3.64544 3.70160 3.82686 3.89523 3.92428 3.95909 3.98794 4.11434 4.20657 4.31982 4.38702 4.40910 4.51172 4.54293 4.58994 4.63374 4.65081 4.76011 4.76973 4.80254 4.86879 4.92152 4.96346 4.97747 5.10254 5.13261 5.20233 5.23534 5.37375 5.40327 5.45286 5.50782 5.73339 5.78147 5.85163 5.96216 6.05492 6.32242 6.49756 7.11393 7.18120 7.79432 8.42859 9.23970 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.016940 B = 0.002628 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.522786 B =10653.294556 C =11041.316167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.036 3.964 3 N -0.527 5.527 4 C 0.013 3.987 5 C 0.057 3.943 6 O -0.391 6.391 7 C 0.079 3.921 8 C 0.033 3.967 9 H 0.080 0.920 10 C 0.520 3.480 11 O -0.556 6.556 12 N -0.714 5.714 13 C 0.148 3.852 14 C -0.089 4.089 15 H 0.098 0.902 16 C 0.137 3.863 17 N -0.629 5.629 18 C -0.241 4.241 19 H 0.079 0.921 20 C -0.066 4.066 21 N -0.948 5.948 22 Si 0.978 3.022 23 H -0.277 1.277 24 H -0.293 1.293 25 H -0.279 1.279 26 C 0.162 3.838 27 C -0.100 4.100 28 H 0.064 0.936 29 C -0.127 4.127 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.022 0.978 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.112 0.888 37 H 0.124 0.876 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.121 0.879 41 H 0.412 0.588 42 H 0.050 0.950 43 H 0.078 0.922 44 H 0.029 0.971 45 H 0.018 0.982 46 H 0.247 0.753 47 H 0.067 0.933 48 H -0.009 1.009 49 H 0.056 0.944 50 H 0.073 0.927 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.854 13.865 -1.880 25.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.091 4.091 3 N -0.254 5.254 4 C -0.115 4.115 5 C -0.020 4.020 6 O -0.309 6.309 7 C 0.001 3.999 8 C -0.079 4.079 9 H 0.097 0.903 10 C 0.306 3.694 11 O -0.435 6.435 12 N -0.367 5.367 13 C 0.024 3.976 14 C -0.108 4.108 15 H 0.116 0.884 16 C 0.012 3.988 17 N -0.355 5.355 18 C -0.370 4.370 19 H 0.097 0.903 20 C -0.259 4.259 21 N -0.597 5.597 22 Si 0.807 3.193 23 H -0.203 1.203 24 H -0.219 1.219 25 H -0.205 1.205 26 C 0.037 3.963 27 C -0.121 4.121 28 H 0.082 0.918 29 C -0.185 4.185 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.040 0.960 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.130 0.870 37 H 0.142 0.858 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.139 0.861 41 H 0.248 0.752 42 H 0.069 0.931 43 H 0.096 0.904 44 H 0.047 0.953 45 H 0.036 0.964 46 H 0.057 0.943 47 H 0.085 0.915 48 H 0.009 0.991 49 H 0.075 0.925 50 H 0.092 0.908 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.139 13.639 -0.981 25.176 hybrid contribution 1.213 -1.377 -1.492 2.365 sum -19.926 12.262 -2.474 23.528 Atomic orbital electron populations 1.21861 0.93181 1.02608 1.02627 1.22418 0.97163 0.88301 1.01190 1.62100 1.01214 1.12547 1.49494 1.23043 1.00794 0.94206 0.93422 1.22935 0.80410 0.95307 1.03312 1.88013 1.19435 1.69493 1.53968 1.22632 0.97310 0.86073 0.93851 1.22321 0.90410 0.98326 0.96832 0.90262 1.20502 0.82250 0.80809 0.85815 1.90617 1.65954 1.48007 1.38873 1.45973 1.06258 1.52406 1.32042 1.21164 0.89762 0.95117 0.91566 1.22385 0.93404 1.00132 0.94904 0.88426 1.21497 0.87884 0.93407 0.95990 1.44794 1.25295 1.54281 1.11083 1.19404 1.03956 1.20075 0.93558 0.90347 1.25615 0.98953 1.02407 0.98926 1.70049 1.22300 1.47895 1.19485 0.85152 0.77520 0.78620 0.78042 1.20347 1.21934 1.20492 1.21756 0.92273 0.98591 0.83660 1.22478 0.96633 0.97857 0.95089 0.91766 1.21600 1.01807 0.99021 0.96053 0.91973 0.91201 0.91542 0.95989 0.89860 0.93894 0.87013 0.85846 0.91912 0.91853 0.86074 0.75153 0.93149 0.90405 0.95332 0.96377 0.94347 0.91468 0.99110 0.92454 0.90792 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.18 71.98 0.66 -1.62 16 2 C 0.04 0.79 5.33 86.30 0.46 1.25 16 3 N -0.53 -10.72 4.51 -874.40 -3.94 -14.66 16 4 C 0.01 0.18 4.94 86.32 0.43 0.61 16 5 C 0.06 0.76 7.01 72.02 0.50 1.26 16 6 O -0.39 -6.98 10.83 -148.98 -1.61 -8.59 16 7 C 0.08 1.34 6.16 72.02 0.44 1.78 16 8 C 0.03 0.67 2.36 44.18 0.10 0.78 16 9 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 10 C 0.52 12.98 6.88 87.66 0.60 13.58 16 11 O -0.56 -17.87 13.70 -3.03 -0.04 -17.91 16 12 N -0.71 -16.14 5.31 -463.07 -2.46 -18.60 16 13 C 0.15 3.94 5.00 86.38 0.43 4.37 16 14 C -0.09 -2.71 2.50 -9.52 -0.02 -2.73 16 15 H 0.10 2.64 8.02 -2.39 -0.02 2.62 16 16 C 0.14 5.34 6.52 86.73 0.57 5.91 16 17 N -0.63 -32.03 3.39 -691.97 -2.35 -34.38 16 18 C -0.24 -13.51 10.27 84.04 0.86 -12.65 16 19 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 20 C -0.07 -3.77 5.49 84.86 0.47 -3.31 16 21 N -0.95 -56.49 10.09 21.65 0.22 -56.27 16 22 Si 0.98 45.70 29.55 68.60 2.03 47.73 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 26 C 0.16 7.84 5.36 86.86 0.47 8.31 16 27 C -0.10 -3.56 3.09 -9.31 -0.03 -3.58 16 28 H 0.06 2.36 8.05 -2.39 -0.02 2.35 16 29 C -0.13 -3.59 9.30 71.98 0.67 -2.92 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 0.85 6.28 -2.38 -0.01 0.83 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 33 H 0.02 0.48 8.08 -2.39 -0.02 0.46 16 34 H 0.08 2.33 5.49 -2.39 -0.01 2.32 16 35 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.11 1.26 6.05 -2.39 -0.01 1.24 16 37 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.12 1.58 7.68 -2.39 -0.02 1.56 16 41 H 0.41 7.52 7.82 -92.71 -0.73 6.80 16 42 H 0.05 1.56 8.06 -2.39 -0.02 1.54 16 43 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.02 0.73 7.76 -2.39 -0.02 0.71 16 46 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 47 H 0.07 3.78 5.87 -2.39 -0.01 3.77 16 48 H -0.01 -0.47 8.04 -2.39 -0.02 -0.49 16 49 H 0.06 1.56 8.11 -2.39 -0.02 1.54 16 50 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 51 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -70.81 389.12 -1.36 -72.18 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.18 Total: 19.48 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 6.61 Total: 11.04 kcal Atomic # 7 Polarization: -115.38 SS G_CDS: -8.53 Total: -123.91 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -1.65 Total: -26.51 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -70.81 -1.36 -72.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092754427.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.467 kcal (2) G-P(sol) polarization free energy of solvation -70.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds