Wall clock time and date at job start Fri Apr 10 2020 18:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.46816 * 2 1 4 4 C 1.47010 * 111.00364 * 46.36972 * 3 2 1 5 5 C 1.53094 * 109.25994 * 182.39410 * 4 3 2 6 6 O 1.43018 * 109.25595 * 303.14561 * 5 4 3 7 7 C 1.43016 * 113.73611 * 58.67518 * 6 5 4 8 8 C 1.47016 * 111.00090 * 170.00436 * 3 2 1 9 9 H 1.09000 * 109.50647 * 297.58869 * 8 3 2 10 10 C 1.50702 * 109.50578 * 57.67119 * 8 3 2 11 11 O 1.21281 * 120.00048 * 0.02562 * 10 8 3 12 12 N 1.34784 * 119.99875 * 180.02562 * 10 8 3 13 13 C 1.46497 * 119.99780 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.46768 * 180.02562 * 13 12 10 15 15 H 1.08997 * 110.64412 * 51.85414 * 14 13 12 16 16 C 1.54342 * 110.99978 * 288.77718 * 14 13 12 17 17 N 1.47029 * 107.26505 * 219.60322 * 16 14 13 18 18 C 1.36928 * 125.64717 * 178.84706 * 17 16 14 19 19 H 1.07999 * 120.00565 * 342.87712 * 18 17 16 20 20 C 1.38811 * 119.99895 * 162.86797 * 18 17 16 21 21 N 1.31620 * 120.00366 * 331.90976 * 20 18 17 22 22 Si 1.86803 * 120.00070 * 151.90412 * 20 18 17 23 23 H 1.48505 * 109.47149 * 270.00560 * 22 20 18 24 24 H 1.48491 * 109.47391 * 150.00538 * 22 20 18 25 25 H 1.48507 * 109.47042 * 30.00175 * 22 20 18 26 26 C 1.47429 * 108.69998 * 358.58438 * 17 16 14 27 27 C 1.54906 * 104.83193 * 24.35861 * 26 17 16 28 28 H 1.09004 * 111.00609 * 81.10106 * 27 26 17 29 29 C 1.53005 * 111.00142 * 204.91099 * 27 26 17 30 30 H 1.08999 * 109.46903 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46980 * 299.99377 * 1 2 3 32 32 H 1.08997 * 109.47317 * 60.00092 * 1 2 3 33 33 H 1.09002 * 109.46980 * 240.00623 * 2 1 3 34 34 H 1.09000 * 109.47779 * 120.00145 * 2 1 3 35 35 H 1.09003 * 109.50105 * 302.32634 * 4 3 2 36 36 H 1.08996 * 109.50669 * 62.45563 * 4 3 2 37 37 H 1.08992 * 109.51187 * 63.08278 * 5 4 3 38 38 H 1.09002 * 109.50699 * 183.17215 * 5 4 3 39 39 H 1.09001 * 109.50557 * 181.39028 * 7 6 5 40 40 H 1.09001 * 109.50766 * 61.26298 * 7 6 5 41 41 H 0.97003 * 119.99766 * 359.97438 * 12 10 8 42 42 H 1.08999 * 109.47504 * 60.00050 * 13 12 10 43 43 H 1.09000 * 109.46847 * 299.99401 * 13 12 10 44 44 H 1.09004 * 109.99016 * 100.12882 * 16 14 13 45 45 H 1.08994 * 109.77582 * 338.95841 * 16 14 13 46 46 H 0.96997 * 119.99663 * 353.96004 * 21 20 18 47 47 H 1.09004 * 110.36261 * 143.19153 * 26 17 16 48 48 H 1.08999 * 110.36862 * 265.40625 * 26 17 16 49 49 H 1.08999 * 109.46621 * 58.54596 * 29 27 26 50 50 H 1.09002 * 109.47176 * 178.54563 * 29 27 26 51 51 H 1.09001 * 109.47230 * 298.54750 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.3024 2.1974 0.9934 5 6 1.8008 3.6430 0.9183 6 8 3.2163 3.6650 1.1212 7 6 3.9463 2.8845 0.1708 8 6 3.4696 1.4313 0.2382 9 1 3.6898 1.0206 1.2236 10 6 4.1787 0.6196 -0.8151 11 8 3.5402 0.0580 -1.6798 12 7 5.5226 0.5179 -0.7961 13 6 6.2120 -0.2706 -1.8204 14 6 7.7207 -0.2230 -1.5709 15 1 7.9487 -0.4964 -0.5406 16 6 8.2919 1.1728 -1.8991 17 7 9.5901 0.9689 -2.5586 18 6 10.4104 1.9593 -3.0291 19 1 10.0207 2.9542 -3.1862 20 6 11.7429 1.6845 -3.3040 21 7 12.3675 0.7305 -2.6466 22 14 12.6499 2.6687 -4.6072 23 1 12.4982 2.0023 -5.9257 24 1 14.0904 2.7471 -4.2551 25 1 12.0821 4.0391 -4.6771 26 6 9.8653 -0.4780 -2.6235 27 6 8.4708 -1.1499 -2.5636 28 1 7.9918 -1.1439 -3.5427 29 6 8.5717 -2.5744 -2.0144 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 0.2332 2.1696 0.7827 36 1 1.4878 1.7998 1.9911 37 1 1.5671 4.0582 -0.0620 38 1 1.3125 4.2369 1.6909 39 1 5.0103 2.9297 0.4032 40 1 3.7750 3.2776 -0.8313 41 1 6.0333 0.9675 -0.1047 42 1 5.9930 0.1421 -2.8052 43 1 5.8690 -1.3042 -1.7751 44 1 8.4280 1.7450 -0.9814 45 1 7.6140 1.7001 -2.5702 46 1 11.9252 0.2788 -1.9110 47 1 10.3665 -0.7271 -3.5589 48 1 10.4740 -0.7869 -1.7737 49 1 9.0139 -2.5493 -1.0185 50 1 7.5757 -3.0138 -1.9587 51 1 9.1973 -3.1750 -2.6747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092754430.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:57 Heat of formation + Delta-G solvation = -49.998753 kcal Electronic energy + Delta-G solvation = -29001.805519 eV Core-core repulsion = 25129.931433 eV Total energy + Delta-G solvation = -3871.874086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.79890 -39.07588 -38.13632 -36.42504 -34.80423 -33.27113 -32.19540 -30.96272 -30.81332 -29.34091 -27.04317 -25.98248 -25.57293 -24.61430 -22.86242 -22.45893 -21.20345 -20.41728 -20.00122 -19.43586 -17.74474 -17.36650 -16.81549 -16.56783 -15.99303 -15.59118 -15.40667 -15.05475 -14.90933 -14.60079 -14.30722 -14.23938 -13.73718 -13.68498 -13.43566 -13.12958 -13.05396 -12.77906 -12.53692 -12.16491 -12.15649 -11.99715 -11.95624 -11.69834 -11.46435 -11.29787 -11.27996 -10.86326 -10.74302 -10.52489 -10.34380 -10.25751 -10.14946 -10.05170 -10.00893 -9.56729 -9.48675 -9.09716 -8.62594 -8.40826 -6.94850 -6.10440 -3.15264 2.46273 2.88465 3.37019 3.51627 3.53701 3.62792 3.70048 4.40883 4.50044 4.56993 4.58450 4.69682 4.79315 4.84446 4.96437 4.99978 5.04380 5.07896 5.08399 5.20137 5.20905 5.25983 5.35526 5.41706 5.50118 5.54900 5.56748 5.59771 5.69091 5.86061 5.87450 5.92011 5.98543 5.99785 6.09689 6.21969 6.33259 6.40262 6.46590 6.54033 6.58860 6.68214 6.73956 6.78612 6.98199 7.06256 7.40677 7.79710 8.12110 8.48536 9.01796 9.80831 10.36428 11.22102 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.017947 B = 0.002714 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.797399 B =10313.263556 C =11418.728207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.036 3.964 3 N -0.514 5.514 4 C 0.012 3.988 5 C 0.059 3.941 6 O -0.378 6.378 7 C 0.074 3.926 8 C 0.031 3.969 9 H 0.075 0.925 10 C 0.520 3.480 11 O -0.522 6.522 12 N -0.723 5.723 13 C 0.135 3.865 14 C -0.110 4.110 15 H 0.078 0.922 16 C 0.141 3.859 17 N -0.603 5.603 18 C -0.337 4.337 19 H 0.065 0.935 20 C -0.025 4.025 21 N -0.917 5.917 22 Si 1.066 2.934 23 H -0.293 1.293 24 H -0.290 1.290 25 H -0.292 1.292 26 C 0.151 3.849 27 C -0.101 4.101 28 H 0.076 0.924 29 C -0.137 4.137 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.113 0.887 34 H 0.026 0.974 35 H 0.096 0.904 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.069 0.931 41 H 0.401 0.599 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.020 0.980 45 H 0.026 0.974 46 H 0.269 0.731 47 H 0.050 0.950 48 H 0.027 0.973 49 H 0.053 0.947 50 H 0.049 0.951 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.942 -1.216 8.952 23.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.091 4.091 3 N -0.241 5.241 4 C -0.116 4.116 5 C -0.018 4.018 6 O -0.296 6.296 7 C -0.003 4.003 8 C -0.082 4.082 9 H 0.092 0.908 10 C 0.304 3.696 11 O -0.398 6.398 12 N -0.375 5.375 13 C 0.011 3.989 14 C -0.129 4.129 15 H 0.096 0.904 16 C 0.015 3.985 17 N -0.330 5.330 18 C -0.464 4.464 19 H 0.082 0.918 20 C -0.227 4.227 21 N -0.558 5.558 22 Si 0.896 3.104 23 H -0.221 1.221 24 H -0.216 1.216 25 H -0.219 1.219 26 C 0.025 3.975 27 C -0.121 4.121 28 H 0.094 0.906 29 C -0.195 4.195 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.130 0.870 34 H 0.044 0.956 35 H 0.114 0.886 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.087 0.913 41 H 0.235 0.765 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.038 0.962 45 H 0.044 0.956 46 H 0.080 0.920 47 H 0.069 0.931 48 H 0.045 0.955 49 H 0.072 0.928 50 H 0.068 0.932 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.906 -1.082 7.142 22.118 hybrid contribution -1.161 -0.398 1.896 2.259 sum -22.066 -1.480 9.038 23.891 Atomic orbital electron populations 1.21914 0.95086 1.01952 1.02064 1.22525 0.95570 0.88222 1.02758 1.62085 1.01077 1.12540 1.48371 1.22953 1.00152 0.94461 0.93990 1.22750 0.81343 0.95291 1.02388 1.88027 1.18258 1.69596 1.53731 1.22617 0.96460 0.87100 0.94163 1.22326 0.90317 0.97944 0.97594 0.90759 1.20123 0.82301 0.81222 0.85905 1.90616 1.65278 1.46620 1.37284 1.46089 1.06330 1.52959 1.32146 1.21429 0.90975 0.95220 0.91236 1.22501 0.92302 0.98053 1.00073 0.90378 1.21373 0.89019 0.92929 0.95172 1.44537 1.18914 1.01363 1.68179 1.19765 0.92161 0.92103 1.42406 0.91758 1.25736 0.92947 1.01333 1.02676 1.70755 1.37779 1.26993 1.20293 0.83496 0.75758 0.74902 0.76223 1.22061 1.21640 1.21873 1.21575 0.92055 0.84245 0.99590 1.22379 0.98218 0.93606 0.97933 0.90580 1.21692 1.00883 0.95933 1.01009 0.92088 0.92873 0.91669 0.86964 0.95599 0.88569 0.93945 0.91938 0.88196 0.87642 0.91304 0.76461 0.91075 0.91521 0.96187 0.95565 0.91991 0.93147 0.95530 0.92767 0.93193 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.18 37.16 0.34 -0.89 16 2 C 0.04 0.38 5.34 -3.83 -0.02 0.36 16 3 N -0.51 -5.50 4.51 -227.73 -1.03 -6.52 16 4 C 0.01 0.10 4.94 -3.72 -0.02 0.08 16 5 C 0.06 0.49 7.01 37.21 0.26 0.75 16 6 O -0.38 -4.01 10.83 -35.23 -0.38 -4.39 16 7 C 0.07 0.76 6.16 37.21 0.23 0.99 16 8 C 0.03 0.33 2.36 -68.75 -0.16 0.16 16 9 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 10 C 0.52 6.64 6.88 -10.98 -0.08 6.56 16 11 O -0.52 -8.31 13.70 5.56 0.08 -8.24 16 12 N -0.72 -8.59 5.38 -60.29 -0.32 -8.92 16 13 C 0.13 1.84 5.03 -4.04 -0.02 1.82 16 14 C -0.11 -1.71 2.41 -88.78 -0.21 -1.93 16 15 H 0.08 1.15 8.01 -51.93 -0.42 0.73 16 16 C 0.14 2.79 6.77 -3.05 -0.02 2.77 16 17 N -0.60 -15.06 3.29 -170.06 -0.56 -15.62 16 18 C -0.34 -9.49 10.02 -15.06 -0.15 -9.64 16 19 H 0.06 1.82 7.97 -52.49 -0.42 1.40 16 20 C -0.03 -0.72 5.08 -17.43 -0.09 -0.81 16 21 N -0.92 -27.61 12.93 55.49 0.72 -26.89 16 22 Si 1.07 25.50 30.00 -169.99 -5.10 20.40 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 26 C 0.15 3.42 4.77 -2.53 -0.01 3.40 16 27 C -0.10 -1.73 3.09 -88.47 -0.27 -2.00 16 28 H 0.08 1.31 8.05 -51.93 -0.42 0.89 16 29 C -0.14 -1.93 9.30 37.16 0.35 -1.59 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.36 6.28 -51.93 -0.33 0.04 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.11 1.47 5.49 -51.93 -0.29 1.18 16 34 H 0.03 0.26 8.08 -51.93 -0.42 -0.16 16 35 H 0.10 0.66 6.05 -51.93 -0.31 0.35 16 36 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.11 0.93 7.68 -51.93 -0.40 0.53 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.40 4.05 7.97 -40.82 -0.33 3.72 16 42 H 0.07 1.09 7.95 -51.93 -0.41 0.68 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.03 0.53 7.70 -51.93 -0.40 0.13 16 46 H 0.27 8.07 6.06 -40.82 -0.25 7.82 16 47 H 0.05 1.27 7.95 -51.93 -0.41 0.86 16 48 H 0.03 0.64 6.70 -51.93 -0.35 0.30 16 49 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16 50 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 51 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 389.91 15.07 5.88 5.88 Total: -1.00 -33.14 389.91 -9.61 -42.75 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -9.01 Total: 1.52 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 0.12 Total: 0.05 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -1.19 Total: -57.96 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -0.31 Total: -12.63 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.10 Total: 20.40 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.14 -9.61 -42.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092754430.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.252 kcal (2) G-P(sol) polarization free energy of solvation -33.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds