Wall clock time and date at job start Fri Apr 10 2020 18:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.46816 * 2 1 4 4 C 1.47010 * 111.00364 * 46.36972 * 3 2 1 5 5 C 1.53094 * 109.25994 * 182.39410 * 4 3 2 6 6 O 1.43018 * 109.25595 * 303.14561 * 5 4 3 7 7 C 1.43016 * 113.73611 * 58.67518 * 6 5 4 8 8 C 1.47016 * 111.00090 * 170.00436 * 3 2 1 9 9 H 1.09000 * 109.50647 * 297.58869 * 8 3 2 10 10 C 1.50702 * 109.50578 * 57.67119 * 8 3 2 11 11 O 1.21281 * 120.00048 * 0.02562 * 10 8 3 12 12 N 1.34784 * 119.99875 * 180.02562 * 10 8 3 13 13 C 1.46497 * 119.99780 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.46768 * 180.02562 * 13 12 10 15 15 H 1.08997 * 110.64412 * 51.85414 * 14 13 12 16 16 C 1.54342 * 110.99978 * 288.77718 * 14 13 12 17 17 N 1.47029 * 107.26505 * 219.60322 * 16 14 13 18 18 C 1.36928 * 125.64717 * 178.84706 * 17 16 14 19 19 H 1.07999 * 120.00565 * 342.87712 * 18 17 16 20 20 C 1.38811 * 119.99895 * 162.86797 * 18 17 16 21 21 N 1.31620 * 120.00366 * 331.90976 * 20 18 17 22 22 Si 1.86803 * 120.00070 * 151.90412 * 20 18 17 23 23 H 1.48505 * 109.47149 * 270.00560 * 22 20 18 24 24 H 1.48491 * 109.47391 * 150.00538 * 22 20 18 25 25 H 1.48507 * 109.47042 * 30.00175 * 22 20 18 26 26 C 1.47429 * 108.69998 * 358.58438 * 17 16 14 27 27 C 1.54906 * 104.83193 * 24.35861 * 26 17 16 28 28 H 1.09004 * 111.00609 * 81.10106 * 27 26 17 29 29 C 1.53005 * 111.00142 * 204.91099 * 27 26 17 30 30 H 1.08999 * 109.46903 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46980 * 299.99377 * 1 2 3 32 32 H 1.08997 * 109.47317 * 60.00092 * 1 2 3 33 33 H 1.09002 * 109.46980 * 240.00623 * 2 1 3 34 34 H 1.09000 * 109.47779 * 120.00145 * 2 1 3 35 35 H 1.09003 * 109.50105 * 302.32634 * 4 3 2 36 36 H 1.08996 * 109.50669 * 62.45563 * 4 3 2 37 37 H 1.08992 * 109.51187 * 63.08278 * 5 4 3 38 38 H 1.09002 * 109.50699 * 183.17215 * 5 4 3 39 39 H 1.09001 * 109.50557 * 181.39028 * 7 6 5 40 40 H 1.09001 * 109.50766 * 61.26298 * 7 6 5 41 41 H 0.97003 * 119.99766 * 359.97438 * 12 10 8 42 42 H 1.08999 * 109.47504 * 60.00050 * 13 12 10 43 43 H 1.09000 * 109.46847 * 299.99401 * 13 12 10 44 44 H 1.09004 * 109.99016 * 100.12882 * 16 14 13 45 45 H 1.08994 * 109.77582 * 338.95841 * 16 14 13 46 46 H 0.96997 * 119.99663 * 353.96004 * 21 20 18 47 47 H 1.09004 * 110.36261 * 143.19153 * 26 17 16 48 48 H 1.08999 * 110.36862 * 265.40625 * 26 17 16 49 49 H 1.08999 * 109.46621 * 58.54596 * 29 27 26 50 50 H 1.09002 * 109.47176 * 178.54563 * 29 27 26 51 51 H 1.09001 * 109.47230 * 298.54750 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.3024 2.1974 0.9934 5 6 1.8008 3.6430 0.9183 6 8 3.2163 3.6650 1.1212 7 6 3.9463 2.8845 0.1708 8 6 3.4696 1.4313 0.2382 9 1 3.6898 1.0206 1.2236 10 6 4.1787 0.6196 -0.8151 11 8 3.5402 0.0580 -1.6798 12 7 5.5226 0.5179 -0.7961 13 6 6.2120 -0.2706 -1.8204 14 6 7.7207 -0.2230 -1.5709 15 1 7.9487 -0.4964 -0.5406 16 6 8.2919 1.1728 -1.8991 17 7 9.5901 0.9689 -2.5586 18 6 10.4104 1.9593 -3.0291 19 1 10.0207 2.9542 -3.1862 20 6 11.7429 1.6845 -3.3040 21 7 12.3675 0.7305 -2.6466 22 14 12.6499 2.6687 -4.6072 23 1 12.4982 2.0023 -5.9257 24 1 14.0904 2.7471 -4.2551 25 1 12.0821 4.0391 -4.6771 26 6 9.8653 -0.4780 -2.6235 27 6 8.4708 -1.1499 -2.5636 28 1 7.9918 -1.1439 -3.5427 29 6 8.5717 -2.5744 -2.0144 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 0.2332 2.1696 0.7827 36 1 1.4878 1.7998 1.9911 37 1 1.5671 4.0582 -0.0620 38 1 1.3125 4.2369 1.6909 39 1 5.0103 2.9297 0.4032 40 1 3.7750 3.2776 -0.8313 41 1 6.0333 0.9675 -0.1047 42 1 5.9930 0.1421 -2.8052 43 1 5.8690 -1.3042 -1.7751 44 1 8.4280 1.7450 -0.9814 45 1 7.6140 1.7001 -2.5702 46 1 11.9252 0.2788 -1.9110 47 1 10.3665 -0.7271 -3.5589 48 1 10.4740 -0.7869 -1.7737 49 1 9.0139 -2.5493 -1.0185 50 1 7.5757 -3.0138 -1.9587 51 1 9.1973 -3.1750 -2.6747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092754430.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:56 Heat of formation + Delta-G solvation = -74.151362 kcal Electronic energy + Delta-G solvation = -29002.852855 eV Core-core repulsion = 25129.931433 eV Total energy + Delta-G solvation = -3872.921422 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.70092 -40.22890 -39.44093 -37.24033 -36.15346 -34.90105 -33.09177 -32.56509 -31.64540 -30.72221 -27.93994 -27.68929 -26.80709 -25.69740 -24.35828 -23.29363 -22.21024 -21.59800 -21.42078 -20.69585 -19.52418 -18.60245 -17.70237 -17.37893 -17.02034 -16.57879 -16.44219 -16.16606 -15.88544 -15.74747 -15.71426 -15.48688 -15.21143 -15.14526 -14.73714 -14.34118 -14.11259 -13.87423 -13.67236 -13.50340 -13.24220 -12.96604 -12.83350 -12.69118 -12.66005 -12.60112 -12.43026 -12.38243 -12.08971 -11.90900 -11.76268 -11.76037 -11.58077 -11.52420 -11.42351 -11.00602 -10.55203 -10.49903 -10.15761 -9.40327 -9.02325 -8.33637 -5.35020 1.46640 1.56390 1.63669 1.81456 1.93055 2.61778 2.62459 2.88007 3.16392 3.44012 3.56373 3.62391 3.72761 3.74960 3.82811 3.89092 3.92027 4.10087 4.18536 4.26333 4.30577 4.35754 4.38435 4.48641 4.52722 4.57939 4.59412 4.61352 4.70191 4.73496 4.76225 4.85773 4.89492 4.89665 4.95206 5.03421 5.09779 5.14103 5.23372 5.24604 5.29650 5.41090 5.48948 5.66598 5.77575 5.95745 6.01872 6.31462 6.44769 6.90591 7.13776 7.69382 8.28451 8.98301 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.017947 B = 0.002714 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.797399 B =10313.263556 C =11418.728207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.038 3.962 3 N -0.532 5.532 4 C 0.015 3.985 5 C 0.054 3.946 6 O -0.390 6.390 7 C 0.077 3.923 8 C 0.037 3.963 9 H 0.088 0.912 10 C 0.521 3.479 11 O -0.555 6.555 12 N -0.716 5.716 13 C 0.148 3.852 14 C -0.088 4.088 15 H 0.096 0.904 16 C 0.137 3.863 17 N -0.628 5.628 18 C -0.346 4.346 19 H 0.057 0.943 20 C -0.077 4.077 21 N -0.944 5.944 22 Si 1.115 2.885 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.272 1.272 26 C 0.154 3.846 27 C -0.090 4.090 28 H 0.075 0.925 29 C -0.131 4.131 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.028 0.972 35 H 0.112 0.888 36 H 0.047 0.953 37 H 0.058 0.942 38 H 0.125 0.875 39 H 0.117 0.883 40 H 0.055 0.945 41 H 0.412 0.588 42 H 0.054 0.946 43 H 0.079 0.921 44 H 0.023 0.977 45 H 0.023 0.977 46 H 0.257 0.743 47 H 0.013 0.987 48 H 0.009 0.991 49 H 0.056 0.944 50 H 0.079 0.921 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.876 -1.173 10.053 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.089 4.089 3 N -0.258 5.258 4 C -0.112 4.112 5 C -0.022 4.022 6 O -0.309 6.309 7 C -0.001 4.001 8 C -0.075 4.075 9 H 0.105 0.895 10 C 0.307 3.693 11 O -0.433 6.433 12 N -0.368 5.368 13 C 0.024 3.976 14 C -0.107 4.107 15 H 0.114 0.886 16 C 0.012 3.988 17 N -0.355 5.355 18 C -0.475 4.475 19 H 0.075 0.925 20 C -0.274 4.274 21 N -0.587 5.587 22 Si 0.940 3.060 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.197 1.197 26 C 0.029 3.971 27 C -0.110 4.110 28 H 0.094 0.906 29 C -0.188 4.188 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.046 0.954 35 H 0.130 0.870 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.143 0.857 39 H 0.135 0.865 40 H 0.074 0.926 41 H 0.248 0.752 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.041 0.959 45 H 0.041 0.959 46 H 0.067 0.933 47 H 0.031 0.969 48 H 0.027 0.973 49 H 0.076 0.924 50 H 0.098 0.902 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.873 -1.025 8.271 24.344 hybrid contribution -0.618 -0.370 1.566 1.724 sum -23.491 -1.395 9.837 25.506 Atomic orbital electron populations 1.21868 0.93324 1.02685 1.02506 1.22423 0.97044 0.88031 1.01425 1.62071 1.01163 1.12894 1.49703 1.23017 1.00735 0.93897 0.93577 1.22957 0.80359 0.95721 1.03165 1.88014 1.19512 1.69605 1.53734 1.22604 0.97203 0.86736 0.93581 1.22272 0.90423 0.97707 0.97118 0.89496 1.20499 0.82207 0.80772 0.85842 1.90619 1.65956 1.48002 1.38695 1.45979 1.06283 1.52656 1.31901 1.21168 0.89422 0.96089 0.90940 1.22333 0.93202 0.94718 1.00488 0.88621 1.21524 0.86896 0.95704 0.94636 1.44834 1.19948 1.01835 1.68885 1.20009 0.92757 0.92706 1.42031 0.92494 1.27089 0.94227 1.02017 1.04034 1.70864 1.38171 1.28578 1.21118 0.82844 0.74537 0.74694 0.73924 1.21278 1.21823 1.19735 1.21504 0.94934 0.83850 0.96834 1.22281 0.94497 0.95381 0.98805 0.90616 1.21656 1.02722 0.93584 1.00860 0.91289 0.91203 0.92336 0.89789 0.95380 0.87004 0.93438 0.92349 0.85732 0.86496 0.92630 0.75212 0.92722 0.90234 0.95944 0.95856 0.93295 0.96874 0.97318 0.92448 0.90249 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.18 71.98 0.66 -1.44 16 2 C 0.04 0.74 5.34 86.30 0.46 1.20 16 3 N -0.53 -10.57 4.51 -874.41 -3.94 -14.51 16 4 C 0.02 0.21 4.94 86.31 0.43 0.64 16 5 C 0.05 0.78 7.01 72.01 0.50 1.29 16 6 O -0.39 -7.56 10.83 -148.98 -1.61 -9.18 16 7 C 0.08 1.46 6.16 72.01 0.44 1.90 16 8 C 0.04 0.73 2.36 44.18 0.10 0.84 16 9 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 10 C 0.52 12.67 6.88 87.66 0.60 13.27 16 11 O -0.55 -17.36 13.70 -3.03 -0.04 -17.40 16 12 N -0.72 -15.76 5.38 -463.06 -2.49 -18.25 16 13 C 0.15 3.78 5.03 86.38 0.43 4.21 16 14 C -0.09 -2.61 2.41 -9.60 -0.02 -2.63 16 15 H 0.10 2.56 8.01 -2.39 -0.02 2.54 16 16 C 0.14 5.40 6.77 86.73 0.59 5.98 16 17 N -0.63 -31.98 3.29 -691.94 -2.28 -34.26 16 18 C -0.35 -19.93 10.02 84.03 0.84 -19.09 16 19 H 0.06 3.28 7.97 -2.91 -0.02 3.25 16 20 C -0.08 -4.51 5.08 84.86 0.43 -4.08 16 21 N -0.94 -58.47 12.93 21.65 0.28 -58.19 16 22 Si 1.12 52.06 30.00 68.60 2.06 54.11 16 23 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 26 C 0.15 7.17 4.77 86.85 0.41 7.58 16 27 C -0.09 -2.98 3.09 -9.40 -0.03 -3.01 16 28 H 0.08 2.54 8.05 -2.39 -0.02 2.52 16 29 C -0.13 -3.40 9.30 71.98 0.67 -2.73 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.76 6.28 -2.39 -0.01 0.75 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 2.17 5.49 -2.39 -0.01 2.16 16 34 H 0.03 0.53 8.08 -2.39 -0.02 0.51 16 35 H 0.11 1.23 6.05 -2.39 -0.01 1.21 16 36 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.12 1.88 7.68 -2.39 -0.02 1.86 16 40 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 41 H 0.41 7.41 7.97 -92.71 -0.74 6.67 16 42 H 0.05 1.62 7.95 -2.39 -0.02 1.60 16 43 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.02 0.94 7.70 -2.39 -0.02 0.92 16 46 H 0.26 16.01 6.06 -92.71 -0.56 15.45 16 47 H 0.01 0.68 7.95 -2.38 -0.02 0.66 16 48 H 0.01 0.45 6.70 -2.39 -0.02 0.43 16 49 H 0.06 1.47 8.11 -2.39 -0.02 1.45 16 50 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -73.84 389.91 -1.12 -74.96 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.37 Total: 18.77 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 6.53 Total: 3.94 kcal Atomic # 7 Polarization: -116.78 SS G_CDS: -8.43 Total: -125.21 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -1.65 Total: -26.58 kcal Atomic # 14 Polarization: 52.06 SS G_CDS: 2.06 Total: 54.11 kcal Total: -73.84 -1.12 -74.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092754430.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.810 kcal (2) G-P(sol) polarization free energy of solvation -73.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds