Wall clock time and date at job start Fri Apr 10 2020 18:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46898 * 109.46953 * 2 1 4 4 C 1.47015 * 110.99642 * 293.62955 * 3 2 1 5 5 C 1.53098 * 109.25723 * 177.60943 * 4 3 2 6 6 O 1.43023 * 109.25952 * 56.85124 * 5 4 3 7 7 C 1.43014 * 113.73189 * 301.32868 * 6 5 4 8 8 H 1.08998 * 109.54816 * 298.71218 * 7 6 5 9 9 C 1.50706 * 109.50275 * 178.60227 * 7 6 5 10 10 O 1.21273 * 119.99948 * 355.22026 * 9 7 6 11 11 N 1.34780 * 119.99659 * 175.21580 * 9 7 6 12 12 C 1.46506 * 119.99448 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.46617 * 180.02562 * 12 11 9 14 14 H 1.09001 * 110.88919 * 51.11761 * 13 12 11 15 15 C 1.54914 * 111.00146 * 287.19348 * 13 12 11 16 16 N 1.47428 * 104.82666 * 204.91911 * 15 13 12 17 17 C 1.36942 * 125.64602 * 204.08396 * 16 15 13 18 18 H 1.08002 * 119.99807 * 0.02562 * 17 16 15 19 19 C 1.38808 * 120.00206 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99863 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00081 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47201 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47221 * 119.99891 * 21 19 17 24 24 H 1.48507 * 109.47064 * 239.99585 * 21 19 17 25 25 C 1.47023 * 108.70774 * 24.13145 * 16 15 13 26 26 C 1.54325 * 107.26935 * 358.94013 * 25 16 15 27 27 H 1.08994 * 110.72090 * 96.16875 * 26 25 16 28 28 C 1.52995 * 110.71853 * 219.44887 * 26 25 16 29 29 C 1.47016 * 110.99994 * 169.99953 * 3 2 1 30 30 H 1.08994 * 109.47199 * 300.00767 * 1 2 3 31 31 H 1.09009 * 109.46751 * 60.00423 * 1 2 3 32 32 H 1.08998 * 109.46982 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47199 * 239.99232 * 2 1 3 34 34 H 1.08996 * 109.46529 * 119.99627 * 2 1 3 35 35 H 1.08999 * 109.50673 * 297.54208 * 4 3 2 36 36 H 1.09004 * 109.50788 * 57.67624 * 4 3 2 37 37 H 1.08997 * 109.51060 * 296.91507 * 5 4 3 38 38 H 1.08998 * 109.54334 * 176.80599 * 5 4 3 39 39 H 0.97001 * 120.00400 * 0.02562 * 11 9 7 40 40 H 1.08996 * 109.46992 * 299.99744 * 12 11 9 41 41 H 1.08993 * 109.47218 * 60.00190 * 12 11 9 42 42 H 1.08996 * 110.36552 * 323.75758 * 15 13 12 43 43 H 1.08999 * 110.36440 * 86.08669 * 15 13 12 44 44 H 0.97002 * 120.00426 * 180.02562 * 20 19 17 45 45 H 1.09002 * 109.88300 * 239.52326 * 25 16 15 46 46 H 1.09003 * 109.88203 * 118.35341 * 25 16 15 47 47 H 1.08996 * 109.47264 * 173.52035 * 28 26 25 48 48 H 1.09001 * 109.46965 * 293.51894 * 28 26 25 49 49 H 1.09002 * 109.47823 * 53.51449 * 28 26 25 50 50 H 1.09000 * 109.50136 * 302.32362 * 29 3 2 51 51 H 1.08996 * 109.50988 * 62.41201 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6766 2.0650 -1.2575 5 6 2.1515 3.5189 -1.1911 6 8 3.5571 3.5445 -0.9278 7 6 3.9266 2.8915 0.2897 8 1 3.4494 3.3928 1.1317 9 6 5.4236 2.9447 0.4549 10 8 6.1147 3.4103 -0.4262 11 7 5.9943 2.4749 1.5819 12 6 7.4495 2.5272 1.7428 13 6 7.8342 1.9345 3.0999 14 1 7.3776 0.9547 3.2395 15 6 7.4527 2.8954 4.2536 16 7 8.3694 2.5463 5.3541 17 6 8.1393 2.7689 6.6856 18 1 7.2199 3.2380 7.0036 19 6 9.0876 2.3918 7.6264 20 7 10.2078 1.8197 7.2389 21 14 8.7740 2.6961 9.4425 22 1 7.4509 3.3483 9.6139 23 1 8.7864 1.4019 10.1707 24 1 9.8355 3.5806 9.9868 25 6 9.5722 1.9205 4.7854 26 6 9.3760 1.8571 3.2560 27 1 9.8560 2.7065 2.7700 28 6 9.9110 0.5377 2.6959 29 6 3.4697 1.4312 0.2383 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.1663 1.5597 -2.0899 36 1 0.5963 2.0412 -1.4011 37 1 1.6222 4.0388 -0.3926 38 1 1.9504 4.0120 -2.1422 39 1 5.4415 2.1022 2.2866 40 1 7.9238 1.9517 0.9478 41 1 7.7839 3.5633 1.6904 42 1 7.6021 3.9314 3.9495 43 1 6.4181 2.7332 4.5558 44 1 10.8704 1.5558 7.8963 45 1 9.6910 0.9138 5.1860 46 1 10.4500 2.5219 5.0219 47 1 9.6602 0.4638 1.6378 48 1 10.9939 0.5046 2.8157 49 1 9.4603 -0.2955 3.2352 50 1 3.6982 0.9447 1.1866 51 1 3.9880 0.9152 -0.5698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093212420.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:01 Heat of formation + Delta-G solvation = -53.887197 kcal Electronic energy + Delta-G solvation = -28554.683590 eV Core-core repulsion = 24682.640888 eV Total energy + Delta-G solvation = -3872.042702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.55863 -39.07416 -37.92636 -36.44918 -34.67516 -33.03707 -32.04094 -31.25540 -30.73653 -29.34898 -27.30153 -25.93392 -25.11337 -24.62881 -23.14942 -22.45129 -20.95159 -20.53407 -20.02174 -19.22163 -17.62910 -16.95303 -16.76652 -16.38028 -15.97848 -15.61013 -15.49486 -15.04097 -14.75085 -14.58627 -14.34800 -14.11636 -13.79797 -13.73327 -13.16146 -13.10011 -12.89560 -12.52784 -12.47184 -12.34693 -12.12662 -11.89030 -11.76708 -11.68393 -11.40203 -11.27905 -11.22401 -11.08818 -10.82188 -10.78556 -10.17237 -10.03099 -9.98672 -9.96416 -9.90040 -9.65393 -9.51425 -8.99343 -8.85892 -8.61241 -6.83543 -5.71921 -3.05422 2.52490 2.74479 3.31551 3.38927 3.44545 3.46963 3.83007 4.39001 4.47526 4.48721 4.52835 4.67504 4.71865 4.84162 4.89959 5.02895 5.07075 5.09609 5.16528 5.20168 5.27661 5.32024 5.35839 5.48420 5.49452 5.52653 5.55960 5.57260 5.75045 5.79574 5.85857 6.01562 6.09094 6.17730 6.27792 6.40474 6.45821 6.48109 6.50589 6.56595 6.61547 6.72564 6.77965 6.93806 7.49098 7.56648 7.63991 7.83433 8.19468 8.25423 9.21555 9.81927 10.47961 11.39728 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.015105 B = 0.002558 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.206582 B =10941.654811 C =11719.249137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 N -0.535 5.535 4 C 0.012 3.988 5 C 0.062 3.938 6 O -0.356 6.356 7 C 0.078 3.922 8 H 0.094 0.906 9 C 0.519 3.481 10 O -0.522 6.522 11 N -0.720 5.720 12 C 0.134 3.866 13 C -0.112 4.112 14 H 0.080 0.920 15 C 0.141 3.859 16 N -0.607 5.607 17 C -0.227 4.227 18 H 0.078 0.922 19 C -0.009 4.009 20 N -0.921 5.921 21 Si 0.911 3.089 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.183 3.817 26 C -0.111 4.111 27 H 0.068 0.932 28 C -0.134 4.134 29 C 0.029 3.971 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.035 0.965 34 H 0.079 0.921 35 H 0.045 0.955 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.103 0.897 39 H 0.402 0.598 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.020 0.980 43 H 0.036 0.964 44 H 0.251 0.749 45 H 0.049 0.951 46 H 0.041 0.959 47 H 0.044 0.956 48 H 0.053 0.947 49 H 0.054 0.946 50 H 0.094 0.906 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.133 -3.567 -16.687 24.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.261 5.261 4 C -0.116 4.116 5 C -0.015 4.015 6 O -0.273 6.273 7 C 0.016 3.984 8 H 0.112 0.888 9 C 0.302 3.698 10 O -0.396 6.396 11 N -0.374 5.374 12 C 0.011 3.989 13 C -0.132 4.132 14 H 0.099 0.901 15 C 0.015 3.985 16 N -0.333 5.333 17 C -0.356 4.356 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.059 3.941 26 C -0.131 4.131 27 H 0.086 0.914 28 C -0.192 4.192 29 C -0.099 4.099 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.121 0.879 39 H 0.236 0.764 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.037 0.963 43 H 0.054 0.946 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.063 0.937 48 H 0.072 0.928 49 H 0.073 0.927 50 H 0.112 0.888 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.603 -2.917 -16.861 23.842 hybrid contribution -0.190 -0.622 0.882 1.096 sum -16.793 -3.539 -15.979 23.449 Atomic orbital electron populations 1.21799 0.94477 1.01815 1.02556 1.22123 0.96380 0.88053 1.01285 1.62257 1.12849 1.16716 1.34259 1.22893 1.02012 0.95875 0.90797 1.22751 0.81512 0.95024 1.02206 1.88133 1.23225 1.76628 1.39348 1.21948 0.93106 0.93402 0.89916 0.88803 1.19991 0.88877 0.78461 0.82429 1.90724 1.63959 1.43991 1.40953 1.45991 1.09080 1.63185 1.19097 1.21431 0.78451 1.01630 0.97430 1.22680 0.97702 0.99845 0.92991 0.90130 1.21592 0.94025 0.94978 0.87897 1.44479 1.16790 1.70690 1.01323 1.19097 1.02273 1.33615 0.80594 0.90439 1.24802 0.96610 1.01009 0.98093 1.69971 1.08600 1.46310 1.32011 0.86055 0.77352 0.77352 0.85065 1.20518 1.21789 1.21774 1.21228 0.89653 0.98281 0.84960 1.22443 0.93033 0.97366 1.00210 0.91377 1.21690 1.00929 0.97203 0.99336 1.22668 0.88432 0.95943 1.02877 0.91605 0.92705 0.92057 0.94623 0.90239 0.93708 0.89094 0.91922 0.87877 0.76355 0.91545 0.91211 0.96282 0.94589 0.93818 0.93294 0.94042 0.93681 0.92758 0.92720 0.88782 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.85 37.16 0.37 -0.48 16 2 C 0.05 0.34 5.68 -3.82 -0.02 0.32 16 3 N -0.54 -4.44 4.73 -234.31 -1.11 -5.55 16 4 C 0.01 0.09 5.44 -3.71 -0.02 0.07 16 5 C 0.06 0.53 7.01 37.21 0.26 0.79 16 6 O -0.36 -4.50 10.01 -55.07 -0.55 -5.05 16 7 C 0.08 0.87 3.22 -27.83 -0.09 0.78 16 8 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 9 C 0.52 7.21 7.18 -10.98 -0.08 7.13 16 10 O -0.52 -9.52 16.51 -14.27 -0.24 -9.76 16 11 N -0.72 -8.91 5.46 -60.29 -0.33 -9.24 16 12 C 0.13 1.90 5.13 -4.04 -0.02 1.88 16 13 C -0.11 -1.80 2.50 -88.46 -0.22 -2.02 16 14 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 15 C 0.14 2.77 6.65 -2.52 -0.02 2.76 16 16 N -0.61 -15.15 3.39 -170.06 -0.58 -15.73 16 17 C -0.23 -6.26 10.28 -15.06 -0.15 -6.41 16 18 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 19 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 20 N -0.92 -26.85 10.31 55.49 0.57 -26.28 16 21 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 C 0.18 4.34 4.97 -3.06 -0.02 4.33 16 26 C -0.11 -1.97 3.02 -88.78 -0.27 -2.24 16 27 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 28 C -0.13 -2.05 9.16 37.16 0.34 -1.71 16 29 C 0.03 0.27 4.88 -3.71 -0.02 0.25 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.29 6.52 -51.92 -0.34 -0.05 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.04 0.25 8.12 -51.93 -0.42 -0.17 16 34 H 0.08 0.53 8.04 -51.93 -0.42 0.11 16 35 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.53 6.38 -51.93 -0.33 0.20 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.40 4.10 8.34 -40.82 -0.34 3.76 16 40 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 41 H 0.07 1.09 7.96 -51.93 -0.41 0.67 16 42 H 0.02 0.39 7.91 -51.93 -0.41 -0.02 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.05 1.28 7.01 -51.93 -0.36 0.91 16 46 H 0.04 1.11 7.51 -51.93 -0.39 0.72 16 47 H 0.04 0.59 8.10 -51.93 -0.42 0.17 16 48 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.05 0.85 8.06 -51.93 -0.42 0.44 16 50 H 0.09 0.74 7.95 -51.93 -0.41 0.32 16 51 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 397.21 15.07 5.99 5.99 Total: -1.00 -33.42 397.21 -10.60 -44.03 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -9.29 Total: -0.44 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -0.05 Total: 5.10 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: -1.44 Total: -56.79 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.79 Total: -14.81 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.42 -10.60 -44.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093212420.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.858 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds