Wall clock time and date at job start Fri Apr 10 2020 18:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21279 * 120.00228 * 2 1 4 4 N 1.34780 * 119.99917 * 180.02562 * 2 1 3 5 5 C 1.46493 * 119.99806 * 180.02562 * 4 2 1 6 6 H 1.09000 * 109.47247 * 324.99484 * 5 4 2 7 7 C 1.52995 * 109.47337 * 84.99739 * 5 4 2 8 8 C 1.50703 * 109.47047 * 205.00097 * 5 4 2 9 9 O 1.21279 * 119.99783 * 359.97438 * 8 5 4 10 10 N 1.34777 * 120.00155 * 180.02562 * 8 5 4 11 11 C 1.46498 * 120.00006 * 179.97438 * 10 8 5 12 12 C 1.53002 * 109.47315 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.70108 * 60.41890 * 12 11 10 14 14 C 1.53618 * 109.66701 * 181.01032 * 12 11 10 15 15 C 1.53037 * 109.24254 * 174.55282 * 14 12 11 16 16 C 1.53045 * 109.53459 * 298.50755 * 15 14 12 17 17 C 1.52999 * 109.49950 * 301.41496 * 16 15 14 18 18 C 1.53006 * 109.49382 * 181.31540 * 16 15 14 19 19 C 1.53191 * 109.31126 * 61.36856 * 16 15 14 20 20 N 1.46924 * 109.58612 * 300.06639 * 12 11 10 21 21 C 1.36933 * 120.63195 * 6.62216 * 20 12 11 22 22 H 1.08007 * 119.99874 * 304.59575 * 21 20 12 23 23 C 1.38817 * 120.00152 * 124.59219 * 21 20 12 24 24 N 1.31615 * 120.00029 * 156.27198 * 23 21 20 25 25 Si 1.86802 * 119.99590 * 335.99354 * 23 21 20 26 26 H 1.48494 * 109.47127 * 275.95026 * 25 23 21 27 27 H 1.48499 * 109.47170 * 35.95542 * 25 23 21 28 28 H 1.48504 * 109.46655 * 155.95545 * 25 23 21 29 29 H 1.08995 * 109.47248 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46885 * 300.00045 * 1 2 3 31 31 H 1.09001 * 109.47347 * 59.99868 * 1 2 3 32 32 H 0.96997 * 120.00001 * 359.97438 * 4 2 1 33 33 H 1.09007 * 109.47266 * 179.97438 * 7 5 4 34 34 H 1.08993 * 109.47308 * 299.99783 * 7 5 4 35 35 H 1.09003 * 109.47268 * 60.00203 * 7 5 4 36 36 H 0.97005 * 119.99677 * 359.97438 * 10 8 5 37 37 H 1.09003 * 109.47045 * 59.99668 * 11 10 8 38 38 H 1.09000 * 109.47016 * 299.99789 * 11 10 8 39 39 H 1.08995 * 109.63452 * 54.55631 * 14 12 11 40 40 H 1.09004 * 109.45921 * 294.43356 * 14 12 11 41 41 H 1.09005 * 109.46227 * 178.48984 * 15 14 12 42 42 H 1.08994 * 109.46372 * 58.53120 * 15 14 12 43 43 H 1.09000 * 109.46653 * 179.83958 * 17 16 15 44 44 H 1.08997 * 109.47105 * 299.83903 * 17 16 15 45 45 H 1.08997 * 109.46713 * 59.83711 * 17 16 15 46 46 H 1.08995 * 109.47579 * 300.16638 * 18 16 15 47 47 H 1.09000 * 109.46783 * 60.17080 * 18 16 15 48 48 H 1.08999 * 109.46584 * 180.16398 * 18 16 15 49 49 H 1.09000 * 109.58753 * 185.57597 * 19 16 15 50 50 H 1.09001 * 109.70092 * 65.21775 * 19 16 15 51 51 H 0.97003 * 119.99981 * 359.71323 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6458 -1.1672 0.0000 6 1 4.0094 -0.3251 -0.5888 7 6 4.1553 -1.0424 1.4373 8 6 4.1484 -2.4545 -0.6011 9 8 3.3604 -3.2899 -0.9911 10 7 5.4735 -2.6779 -0.7044 11 6 5.9621 -3.9295 -1.2883 12 6 7.4921 -3.9295 -1.2878 13 1 7.8592 -3.8478 -0.2648 14 6 8.0092 -5.2294 -1.9224 15 6 9.5335 -5.1611 -2.0412 16 6 9.9240 -3.9933 -2.9500 17 6 9.2853 -4.1822 -4.3274 18 6 11.4465 -3.9458 -3.0945 19 6 9.4280 -2.6823 -2.3318 20 7 7.9848 -2.7945 -2.0801 21 6 7.1162 -1.8561 -2.5698 22 1 6.2837 -2.1606 -3.1867 23 6 7.3056 -0.5132 -2.2732 24 7 6.8096 0.4123 -3.0667 25 14 8.2577 -0.0199 -0.7436 26 1 7.3471 -0.0247 0.4293 27 1 9.3632 -0.9849 -0.5160 28 1 8.8198 1.3422 -0.9284 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6959 -2.0072 -0.0005 33 1 5.2454 -1.0428 1.4377 34 1 3.7919 -0.1113 1.8720 35 1 3.7918 -1.8846 2.0261 36 1 6.1037 -2.0099 -0.3921 37 1 5.5993 -4.0186 -2.3123 38 1 5.5982 -4.7715 -0.6994 39 1 7.5722 -5.3524 -2.9133 40 1 7.7309 -6.0758 -1.2944 41 1 9.9068 -6.0927 -2.4664 42 1 9.9685 -5.0133 -1.0528 43 1 9.5615 -3.3488 -4.9733 44 1 9.6385 -5.1151 -4.7668 45 1 8.2009 -4.2174 -4.2232 46 1 11.9007 -3.8126 -2.1127 47 1 11.7990 -4.8787 -3.5344 48 1 11.7244 -3.1122 -3.7395 49 1 9.6157 -1.8592 -3.0212 50 1 9.9495 -2.4985 -1.3925 51 1 6.3153 0.1561 -3.8610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098872743.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:29 Heat of formation + Delta-G solvation = -72.713840 kcal Electronic energy + Delta-G solvation = -30229.726909 eV Core-core repulsion = 26356.867822 eV Total energy + Delta-G solvation = -3872.859086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.01351 -39.10244 -38.39856 -35.32421 -34.61065 -33.20542 -32.41888 -31.21450 -30.71935 -28.84116 -27.48366 -26.79619 -25.30540 -24.47774 -22.93048 -22.21090 -20.36325 -20.16296 -19.62342 -18.40239 -17.58281 -16.96465 -16.44984 -15.63864 -15.44651 -15.08188 -14.81824 -14.64521 -14.35872 -14.14697 -13.70101 -13.56999 -13.42769 -13.37084 -12.97606 -12.86471 -12.67348 -12.52602 -12.22017 -12.19635 -12.06952 -11.93946 -11.67367 -11.56944 -11.35345 -11.29939 -11.02589 -10.82037 -10.71515 -10.45189 -10.23371 -9.92605 -9.76362 -9.69036 -9.65036 -9.43655 -9.19830 -8.91721 -8.52001 -8.24959 -6.95317 -6.11531 -3.72456 2.76954 3.11421 3.20548 3.29706 3.41357 3.57249 3.93056 4.47075 4.86938 4.90643 5.10004 5.14275 5.21058 5.27842 5.29529 5.31728 5.36901 5.40783 5.47365 5.59409 5.70477 5.75502 5.82042 5.84988 5.95743 6.00659 6.05249 6.06051 6.14894 6.19389 6.26424 6.29711 6.30329 6.32857 6.37303 6.50472 6.55756 6.60986 6.73719 6.75583 6.84459 6.95535 7.07368 7.11890 7.68305 8.13574 8.20449 8.39513 8.52793 8.74329 8.96128 9.45297 10.21884 10.93251 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.017253 B = 0.004125 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.528851 B = 6785.534696 C = 7567.832037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.509 3.491 3 O -0.546 6.546 4 N -0.709 5.709 5 C 0.120 3.880 6 H 0.119 0.881 7 C -0.157 4.157 8 C 0.509 3.491 9 O -0.566 6.566 10 N -0.679 5.679 11 C 0.142 3.858 12 C 0.151 3.849 13 H 0.033 0.967 14 C -0.129 4.129 15 C -0.096 4.096 16 C -0.088 4.088 17 C -0.125 4.125 18 C -0.137 4.137 19 C 0.153 3.847 20 N -0.593 5.593 21 C -0.352 4.352 22 H 0.051 0.949 23 C 0.015 3.985 24 N -0.893 5.893 25 Si 1.020 2.980 26 H -0.289 1.289 27 H -0.270 1.270 28 H -0.290 1.290 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.407 0.593 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.409 0.591 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.046 0.954 44 H 0.033 0.967 45 H 0.066 0.934 46 H 0.049 0.951 47 H 0.046 0.954 48 H 0.051 0.949 49 H 0.063 0.937 50 H 0.026 0.974 51 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.966 -8.209 6.737 10.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.295 3.705 3 O -0.423 6.423 4 N -0.363 5.363 5 C 0.012 3.988 6 H 0.136 0.864 7 C -0.216 4.216 8 C 0.294 3.706 9 O -0.447 6.447 10 N -0.329 5.329 11 C 0.018 3.982 12 C 0.044 3.956 13 H 0.050 0.950 14 C -0.168 4.168 15 C -0.133 4.133 16 C -0.089 4.089 17 C -0.182 4.182 18 C -0.195 4.195 19 C 0.028 3.972 20 N -0.319 5.319 21 C -0.482 4.482 22 H 0.069 0.931 23 C -0.192 4.192 24 N -0.528 5.528 25 Si 0.848 3.152 26 H -0.216 1.216 27 H -0.196 1.196 28 H -0.217 1.217 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.244 0.756 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.247 0.753 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.053 0.947 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.081 0.919 50 H 0.044 0.956 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.551 -6.716 7.294 10.036 hybrid contribution -0.346 -1.353 -0.897 1.660 sum -1.897 -8.069 6.397 10.471 Atomic orbital electron populations 1.21813 0.91681 1.04128 1.05091 1.20800 0.90574 0.83418 0.75667 1.90754 1.70597 1.31322 1.49606 1.45868 1.06099 1.09379 1.74978 1.20780 0.81517 0.98208 0.98329 0.86365 1.22111 1.01992 1.02839 0.94631 1.20325 0.83273 0.87767 0.79259 1.90603 1.55646 1.47025 1.51377 1.45851 1.05963 1.20946 1.60121 1.21183 0.93831 0.84718 0.98439 1.21043 0.91216 0.89269 0.94034 0.94981 1.22047 0.96033 0.97485 1.01279 1.21407 0.95712 0.97248 0.98980 1.21090 0.93953 0.97828 0.96056 1.21700 1.01898 0.99275 0.95328 1.21813 0.95848 1.00876 1.00998 1.21423 0.84979 0.93968 0.96839 1.44267 1.02101 1.25932 1.59555 1.19747 1.10996 0.87154 1.30280 0.93115 1.26588 0.98676 0.92354 1.01629 1.70890 1.33519 1.35274 1.13110 0.84374 0.77496 0.76386 0.76896 1.21646 1.19593 1.21674 0.90597 0.88908 0.88766 0.75630 0.90921 0.91059 0.92083 0.75306 0.91611 0.92724 0.91531 0.93016 0.93273 0.92811 0.93536 0.94746 0.91483 0.93231 0.93529 0.92947 0.91890 0.95614 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 10.39 36.01 0.37 -1.29 16 2 C 0.51 7.82 7.90 -10.98 -0.09 7.74 16 3 O -0.55 -10.90 16.76 5.56 0.09 -10.81 16 4 N -0.71 -10.86 4.95 -54.94 -0.27 -11.13 16 5 C 0.12 2.13 2.98 -69.09 -0.21 1.92 16 6 H 0.12 2.49 7.58 -51.93 -0.39 2.09 16 7 C -0.16 -2.37 9.38 37.15 0.35 -2.03 16 8 C 0.51 9.81 7.22 -10.98 -0.08 9.73 16 9 O -0.57 -11.73 15.84 5.56 0.09 -11.64 16 10 N -0.68 -13.15 4.05 -60.29 -0.24 -13.39 16 11 C 0.14 2.62 4.55 -4.04 -0.02 2.60 16 12 C 0.15 2.69 3.03 -67.38 -0.20 2.48 16 13 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 14 C -0.13 -1.98 5.05 -26.39 -0.13 -2.12 16 15 C -0.10 -1.40 4.71 -26.69 -0.13 -1.53 16 16 C -0.09 -1.41 0.77 -154.38 -0.12 -1.53 16 17 C -0.12 -2.07 7.99 37.16 0.30 -1.78 16 18 C -0.14 -1.90 8.48 37.16 0.32 -1.58 16 19 C 0.15 2.98 3.39 -3.71 -0.01 2.97 16 20 N -0.59 -12.26 1.59 -164.52 -0.26 -12.52 16 21 C -0.35 -8.56 6.24 -15.06 -0.09 -8.66 16 22 H 0.05 1.43 7.40 -52.48 -0.39 1.04 16 23 C 0.01 0.38 5.03 -17.43 -0.09 0.29 16 24 N -0.89 -25.61 13.71 55.49 0.76 -24.85 16 25 Si 1.02 23.19 26.71 -169.99 -4.54 18.65 16 26 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.27 -5.69 5.10 56.52 0.29 -5.40 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H 0.08 0.58 7.91 -51.93 -0.41 0.17 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.41 5.51 7.63 -40.82 -0.31 5.20 16 33 H 0.07 1.11 7.56 -51.93 -0.39 0.71 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.41 8.24 5.17 -40.82 -0.21 8.03 16 37 H 0.07 1.37 7.56 -51.93 -0.39 0.97 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 1.09 6.33 -51.93 -0.33 0.76 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 1.25 5.97 -51.93 -0.31 0.94 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.06 1.36 7.75 -51.93 -0.40 0.96 16 50 H 0.03 0.51 6.56 -51.93 -0.34 0.17 16 51 H 0.27 7.84 8.73 -40.82 -0.36 7.49 16 LS Contribution 390.18 15.07 5.88 5.88 Total: -1.00 -29.95 390.18 -7.40 -37.35 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: -9.07 Total: 15.23 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 0.17 Total: 7.23 kcal Atomic # 7 Polarization: -61.87 SS G_CDS: -0.02 Total: -61.89 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: 0.18 Total: -22.45 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -4.54 Total: 18.65 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.95 -7.40 -37.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098872743.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.368 kcal (2) G-P(sol) polarization free energy of solvation -29.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds