Wall clock time and date at job start Fri Apr 10 2020 18:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21279 * 120.00228 * 2 1 4 4 N 1.34780 * 119.99917 * 180.02562 * 2 1 3 5 5 C 1.46493 * 119.99806 * 180.02562 * 4 2 1 6 6 H 1.09000 * 109.47247 * 324.99484 * 5 4 2 7 7 C 1.52995 * 109.47337 * 84.99739 * 5 4 2 8 8 C 1.50703 * 109.47047 * 205.00097 * 5 4 2 9 9 O 1.21279 * 119.99783 * 359.97438 * 8 5 4 10 10 N 1.34777 * 120.00155 * 180.02562 * 8 5 4 11 11 C 1.46498 * 120.00006 * 179.97438 * 10 8 5 12 12 C 1.53002 * 109.47315 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.70108 * 60.41890 * 12 11 10 14 14 C 1.53618 * 109.66701 * 181.01032 * 12 11 10 15 15 C 1.53037 * 109.24254 * 174.55282 * 14 12 11 16 16 C 1.53045 * 109.53459 * 298.50755 * 15 14 12 17 17 C 1.52999 * 109.49950 * 301.41496 * 16 15 14 18 18 C 1.53006 * 109.49382 * 181.31540 * 16 15 14 19 19 C 1.53191 * 109.31126 * 61.36856 * 16 15 14 20 20 N 1.46924 * 109.58612 * 300.06639 * 12 11 10 21 21 C 1.36933 * 120.63195 * 6.62216 * 20 12 11 22 22 H 1.08007 * 119.99874 * 304.59575 * 21 20 12 23 23 C 1.38817 * 120.00152 * 124.59219 * 21 20 12 24 24 N 1.31615 * 120.00029 * 156.27198 * 23 21 20 25 25 Si 1.86802 * 119.99590 * 335.99354 * 23 21 20 26 26 H 1.48494 * 109.47127 * 275.95026 * 25 23 21 27 27 H 1.48499 * 109.47170 * 35.95542 * 25 23 21 28 28 H 1.48504 * 109.46655 * 155.95545 * 25 23 21 29 29 H 1.08995 * 109.47248 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46885 * 300.00045 * 1 2 3 31 31 H 1.09001 * 109.47347 * 59.99868 * 1 2 3 32 32 H 0.96997 * 120.00001 * 359.97438 * 4 2 1 33 33 H 1.09007 * 109.47266 * 179.97438 * 7 5 4 34 34 H 1.08993 * 109.47308 * 299.99783 * 7 5 4 35 35 H 1.09003 * 109.47268 * 60.00203 * 7 5 4 36 36 H 0.97005 * 119.99677 * 359.97438 * 10 8 5 37 37 H 1.09003 * 109.47045 * 59.99668 * 11 10 8 38 38 H 1.09000 * 109.47016 * 299.99789 * 11 10 8 39 39 H 1.08995 * 109.63452 * 54.55631 * 14 12 11 40 40 H 1.09004 * 109.45921 * 294.43356 * 14 12 11 41 41 H 1.09005 * 109.46227 * 178.48984 * 15 14 12 42 42 H 1.08994 * 109.46372 * 58.53120 * 15 14 12 43 43 H 1.09000 * 109.46653 * 179.83958 * 17 16 15 44 44 H 1.08997 * 109.47105 * 299.83903 * 17 16 15 45 45 H 1.08997 * 109.46713 * 59.83711 * 17 16 15 46 46 H 1.08995 * 109.47579 * 300.16638 * 18 16 15 47 47 H 1.09000 * 109.46783 * 60.17080 * 18 16 15 48 48 H 1.08999 * 109.46584 * 180.16398 * 18 16 15 49 49 H 1.09000 * 109.58753 * 185.57597 * 19 16 15 50 50 H 1.09001 * 109.70092 * 65.21775 * 19 16 15 51 51 H 0.97003 * 119.99981 * 359.71323 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6458 -1.1672 0.0000 6 1 4.0094 -0.3251 -0.5888 7 6 4.1553 -1.0424 1.4373 8 6 4.1484 -2.4545 -0.6011 9 8 3.3604 -3.2899 -0.9911 10 7 5.4735 -2.6779 -0.7044 11 6 5.9621 -3.9295 -1.2883 12 6 7.4921 -3.9295 -1.2878 13 1 7.8592 -3.8478 -0.2648 14 6 8.0092 -5.2294 -1.9224 15 6 9.5335 -5.1611 -2.0412 16 6 9.9240 -3.9933 -2.9500 17 6 9.2853 -4.1822 -4.3274 18 6 11.4465 -3.9458 -3.0945 19 6 9.4280 -2.6823 -2.3318 20 7 7.9848 -2.7945 -2.0801 21 6 7.1162 -1.8561 -2.5698 22 1 6.2837 -2.1606 -3.1867 23 6 7.3056 -0.5132 -2.2732 24 7 6.8096 0.4123 -3.0667 25 14 8.2577 -0.0199 -0.7436 26 1 7.3471 -0.0247 0.4293 27 1 9.3632 -0.9849 -0.5160 28 1 8.8198 1.3422 -0.9284 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6959 -2.0072 -0.0005 33 1 5.2454 -1.0428 1.4377 34 1 3.7919 -0.1113 1.8720 35 1 3.7918 -1.8846 2.0261 36 1 6.1037 -2.0099 -0.3921 37 1 5.5993 -4.0186 -2.3123 38 1 5.5982 -4.7715 -0.6994 39 1 7.5722 -5.3524 -2.9133 40 1 7.7309 -6.0758 -1.2944 41 1 9.9068 -6.0927 -2.4664 42 1 9.9685 -5.0133 -1.0528 43 1 9.5615 -3.3488 -4.9733 44 1 9.6385 -5.1151 -4.7668 45 1 8.2009 -4.2174 -4.2232 46 1 11.9007 -3.8126 -2.1127 47 1 11.7990 -4.8787 -3.5344 48 1 11.7244 -3.1122 -3.7395 49 1 9.6157 -1.8592 -3.0212 50 1 9.9495 -2.4985 -1.3925 51 1 6.3153 0.1561 -3.8610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098872743.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:28 Heat of formation + Delta-G solvation = -93.206678 kcal Electronic energy + Delta-G solvation = -30230.615545 eV Core-core repulsion = 26356.867822 eV Total energy + Delta-G solvation = -3873.747722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.46373 -40.51651 -39.84745 -36.81147 -36.04835 -35.00514 -33.93487 -32.54361 -32.32144 -29.88810 -28.82818 -28.09230 -27.03205 -25.86206 -24.41027 -23.70789 -21.80642 -21.63724 -21.12402 -19.99384 -19.06652 -18.52494 -17.83954 -17.12543 -16.97202 -16.39899 -16.25831 -16.11805 -15.88614 -15.67022 -15.24398 -14.98123 -14.79202 -14.74797 -14.49744 -14.35859 -14.07688 -13.70301 -13.57618 -13.49478 -13.28819 -13.07769 -13.01630 -12.81375 -12.66655 -12.63809 -12.57214 -12.31764 -12.24916 -12.01071 -11.73218 -11.34155 -11.31523 -11.10710 -11.08786 -10.99304 -10.84333 -10.43818 -10.29069 -9.92112 -8.93530 -8.01903 -5.76121 1.44376 1.47751 1.52487 1.60565 1.72106 1.91648 2.51117 2.57334 3.09545 3.41613 3.59631 3.86639 3.92258 3.95982 3.99570 4.07927 4.09506 4.26712 4.36545 4.46170 4.46384 4.53704 4.60308 4.64554 4.69058 4.73000 4.78367 4.86024 4.88327 5.00220 5.02209 5.02957 5.04831 5.08451 5.12179 5.15603 5.21759 5.27189 5.29393 5.44575 5.47629 5.55500 5.59486 5.74976 6.02815 6.48500 6.49276 6.54510 7.04717 7.13913 7.18982 7.60006 8.26905 8.84059 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.017253 B = 0.004125 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.528851 B = 6785.534696 C = 7567.832037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.501 3.499 3 O -0.599 6.599 4 N -0.703 5.703 5 C 0.122 3.878 6 H 0.077 0.923 7 C -0.148 4.148 8 C 0.508 3.492 9 O -0.581 6.581 10 N -0.682 5.682 11 C 0.144 3.856 12 C 0.150 3.850 13 H 0.052 0.948 14 C -0.124 4.124 15 C -0.091 4.091 16 C -0.085 4.085 17 C -0.119 4.119 18 C -0.132 4.132 19 C 0.151 3.849 20 N -0.603 5.603 21 C -0.312 4.312 22 H 0.002 0.998 23 C -0.029 4.029 24 N -0.939 5.939 25 Si 1.051 2.949 26 H -0.267 1.267 27 H -0.238 1.238 28 H -0.311 1.311 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.101 0.899 32 H 0.418 0.582 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.406 0.594 37 H 0.032 0.968 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.027 0.973 44 H 0.060 0.940 45 H 0.038 0.962 46 H 0.061 0.939 47 H 0.067 0.933 48 H 0.044 0.956 49 H 0.030 0.970 50 H 0.035 0.965 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.033 -11.175 9.235 14.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.291 3.709 3 O -0.480 6.480 4 N -0.357 5.357 5 C 0.012 3.988 6 H 0.095 0.905 7 C -0.207 4.207 8 C 0.293 3.707 9 O -0.463 6.463 10 N -0.331 5.331 11 C 0.020 3.980 12 C 0.044 3.956 13 H 0.070 0.930 14 C -0.163 4.163 15 C -0.129 4.129 16 C -0.087 4.087 17 C -0.176 4.176 18 C -0.190 4.190 19 C 0.026 3.974 20 N -0.329 5.329 21 C -0.442 4.442 22 H 0.020 0.980 23 C -0.229 4.229 24 N -0.577 5.577 25 Si 0.875 3.125 26 H -0.192 1.192 27 H -0.162 1.162 28 H -0.239 1.239 29 H 0.123 0.877 30 H 0.131 0.869 31 H 0.119 0.881 32 H 0.256 0.744 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.243 0.757 37 H 0.051 0.949 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.046 0.954 44 H 0.079 0.921 45 H 0.057 0.943 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.063 0.937 49 H 0.049 0.951 50 H 0.053 0.947 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.620 -9.767 9.809 13.856 hybrid contribution -0.672 -0.536 -1.787 1.983 sum -1.293 -10.303 8.022 13.121 Atomic orbital electron populations 1.21857 0.86874 1.06488 1.06341 1.21870 0.92765 0.82307 0.73973 1.90731 1.72142 1.33076 1.52042 1.45896 1.05061 1.10179 1.74610 1.20628 0.83215 0.95580 0.99341 0.90466 1.22056 1.01863 1.03902 0.92841 1.20584 0.83160 0.88045 0.78877 1.90580 1.55924 1.47780 1.52038 1.45914 1.06031 1.21211 1.59965 1.21244 0.94575 0.85195 0.96956 1.21217 0.90564 0.89200 0.94585 0.93029 1.22001 0.96778 0.96757 1.00794 1.21405 0.94787 0.97322 0.99348 1.21042 0.95635 0.96539 0.95483 1.21634 1.00123 0.99874 0.96002 1.21761 0.93623 1.01792 1.01844 1.21428 0.84050 0.95194 0.96721 1.44315 1.02257 1.26100 1.60257 1.19232 1.09523 0.87752 1.27708 0.98050 1.27530 0.99439 0.92724 1.03186 1.71029 1.36627 1.36237 1.13824 0.84028 0.77846 0.75681 0.74956 1.19236 1.16182 1.23911 0.87711 0.86865 0.88079 0.74364 0.91042 0.91135 0.89485 0.75747 0.94944 0.90138 0.93088 0.89907 0.90739 0.91412 0.95359 0.92125 0.94330 0.91975 0.91358 0.93716 0.95101 0.94737 0.94300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 10.39 71.24 0.74 -2.06 16 2 C 0.50 15.40 7.90 87.66 0.69 16.09 16 3 O -0.60 -24.76 16.76 -3.03 -0.05 -24.81 16 4 N -0.70 -21.47 4.95 -446.11 -2.21 -23.68 16 5 C 0.12 4.41 2.98 44.25 0.13 4.54 16 6 H 0.08 3.48 7.58 -2.39 -0.02 3.46 16 7 C -0.15 -4.37 9.38 71.98 0.68 -3.69 16 8 C 0.51 19.83 7.22 87.66 0.63 20.46 16 9 O -0.58 -24.17 15.84 -3.03 -0.05 -24.22 16 10 N -0.68 -26.56 4.05 -463.06 -1.88 -28.44 16 11 C 0.14 5.23 4.55 86.38 0.39 5.63 16 12 C 0.15 5.04 3.03 45.12 0.14 5.18 16 13 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 14 C -0.12 -3.42 5.05 30.81 0.16 -3.26 16 15 C -0.09 -2.26 4.71 30.62 0.14 -2.12 16 16 C -0.09 -2.54 0.77 -52.10 -0.04 -2.58 16 17 C -0.12 -3.86 7.99 71.98 0.58 -3.28 16 18 C -0.13 -3.20 8.48 71.98 0.61 -2.59 16 19 C 0.15 5.70 3.39 86.36 0.29 6.00 16 20 N -0.60 -24.80 1.59 -674.43 -1.07 -25.88 16 21 C -0.31 -15.83 6.24 84.04 0.52 -15.31 16 22 H 0.00 0.12 7.40 -2.91 -0.02 0.10 16 23 C -0.03 -1.58 5.03 84.86 0.43 -1.15 16 24 N -0.94 -57.50 13.71 21.65 0.30 -57.20 16 25 Si 1.05 47.28 26.71 68.60 1.83 49.11 16 26 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 27 H -0.24 -9.35 5.10 99.48 0.51 -8.84 16 28 H -0.31 -15.15 7.11 99.48 0.71 -14.44 16 29 H 0.10 1.27 7.91 -2.39 -0.02 1.25 16 30 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.42 10.90 7.63 -92.71 -0.71 10.19 16 33 H 0.07 2.10 7.56 -2.38 -0.02 2.09 16 34 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.09 2.09 8.14 -2.39 -0.02 2.08 16 36 H 0.41 16.33 5.17 -92.70 -0.48 15.85 16 37 H 0.03 1.39 7.56 -2.39 -0.02 1.37 16 38 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.05 1.58 6.33 -2.39 -0.02 1.57 16 40 H 0.08 1.82 8.14 -2.38 -0.02 1.81 16 41 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.04 1.45 5.97 -2.39 -0.01 1.44 16 46 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.03 1.34 7.75 -2.39 -0.02 1.33 16 50 H 0.03 1.26 6.56 -2.39 -0.02 1.24 16 51 H 0.25 15.73 8.73 -92.71 -0.81 14.92 16 Total: -1.00 -71.56 390.18 2.46 -69.10 By element: Atomic # 1 Polarization: 44.66 SS G_CDS: -0.51 Total: 44.15 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: 6.09 Total: 21.85 kcal Atomic # 7 Polarization: -130.33 SS G_CDS: -4.86 Total: -135.19 kcal Atomic # 8 Polarization: -48.93 SS G_CDS: -0.10 Total: -49.03 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.83 Total: 49.11 kcal Total: -71.56 2.46 -69.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098872743.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.105 kcal (2) G-P(sol) polarization free energy of solvation -71.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds