Wall clock time and date at job start Fri Apr 10 2020 18:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21285 * 120.00226 * 2 1 4 4 N 1.34774 * 120.00152 * 180.02562 * 2 1 3 5 5 C 1.46498 * 120.00185 * 180.02562 * 4 2 1 6 6 H 1.08999 * 109.47557 * 34.99807 * 5 4 2 7 7 C 1.53006 * 109.47043 * 275.00054 * 5 4 2 8 8 C 1.50703 * 109.47155 * 155.00167 * 5 4 2 9 9 O 1.21280 * 119.99879 * 359.97438 * 8 5 4 10 10 N 1.34778 * 119.99532 * 180.02562 * 8 5 4 11 11 C 1.46500 * 119.99312 * 179.97438 * 10 8 5 12 12 C 1.53008 * 109.47180 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.69926 * 297.41526 * 12 11 10 14 14 C 1.52751 * 109.51159 * 177.29334 * 12 11 10 15 15 C 1.53045 * 109.38321 * 185.70550 * 14 12 11 16 16 C 1.53040 * 109.53474 * 61.24268 * 15 14 12 17 17 C 1.53003 * 109.49608 * 178.68459 * 16 15 14 18 18 C 1.52992 * 109.52422 * 58.60427 * 16 15 14 19 19 C 1.53190 * 109.31086 * 298.63426 * 16 15 14 20 20 N 1.46920 * 108.78030 * 54.63824 * 19 16 15 21 21 C 1.36933 * 120.63464 * 126.36046 * 20 19 16 22 22 H 1.08003 * 120.00597 * 210.40606 * 21 20 19 23 23 C 1.38818 * 119.99426 * 30.41242 * 21 20 19 24 24 N 1.31621 * 119.99490 * 205.77771 * 23 21 20 25 25 Si 1.86799 * 120.00372 * 25.78028 * 23 21 20 26 26 H 1.48501 * 109.47138 * 245.38363 * 25 23 21 27 27 H 1.48498 * 109.46949 * 5.38271 * 25 23 21 28 28 H 1.48502 * 109.47133 * 125.38142 * 25 23 21 29 29 H 1.09004 * 109.46993 * 269.99881 * 1 2 3 30 30 H 1.09002 * 109.47055 * 29.99356 * 1 2 3 31 31 H 1.08996 * 109.47056 * 149.99713 * 1 2 3 32 32 H 0.96999 * 119.99855 * 359.97438 * 4 2 1 33 33 H 1.08996 * 109.46957 * 180.02562 * 7 5 4 34 34 H 1.08999 * 109.46742 * 300.00251 * 7 5 4 35 35 H 1.08995 * 109.47227 * 59.99861 * 7 5 4 36 36 H 0.96997 * 120.00709 * 359.97438 * 10 8 5 37 37 H 1.08996 * 109.47528 * 59.99932 * 11 10 8 38 38 H 1.08994 * 109.47488 * 299.99429 * 11 10 8 39 39 H 1.09004 * 109.56781 * 65.67472 * 14 12 11 40 40 H 1.08998 * 109.39250 * 305.63541 * 14 12 11 41 41 H 1.09004 * 109.46081 * 301.22414 * 15 14 12 42 42 H 1.09005 * 109.46089 * 181.26328 * 15 14 12 43 43 H 1.08996 * 109.47225 * 179.83420 * 17 16 15 44 44 H 1.08996 * 109.47179 * 299.83942 * 17 16 15 45 45 H 1.08999 * 109.46938 * 59.83618 * 17 16 15 46 46 H 1.08997 * 109.47282 * 300.14321 * 18 16 15 47 47 H 1.09003 * 109.47349 * 60.14811 * 18 16 15 48 48 H 1.09002 * 109.46930 * 180.14692 * 18 16 15 49 49 H 1.09001 * 109.58973 * 294.84811 * 19 16 15 50 50 H 1.09001 * 109.70374 * 174.49790 * 19 16 15 51 51 H 0.97003 * 120.00256 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0091 -0.3258 0.5901 7 6 4.1564 -1.0405 -1.4367 8 6 4.1480 -2.4553 0.5998 9 8 3.3597 -3.2908 0.9889 10 7 5.4730 -2.6783 0.7047 11 6 5.9611 -3.9303 1.2882 12 6 7.4912 -3.9304 1.2887 13 1 7.8589 -3.8869 0.2636 14 6 8.0010 -5.2053 1.9580 15 6 9.5247 -5.1378 2.0851 16 6 9.9129 -3.9430 2.9591 17 6 11.4345 -3.8955 3.1126 18 6 9.2649 -4.0859 4.3376 19 6 9.4252 -2.6509 2.2963 20 7 7.9835 -2.7665 2.0384 21 6 7.1145 -1.8109 2.4930 22 1 6.1019 -2.0817 2.7533 23 6 7.5350 -0.4940 2.6191 24 7 6.9466 0.3046 3.4842 25 14 8.9358 0.1446 1.5611 26 1 10.0939 0.4852 2.4260 27 1 9.3367 -0.9016 0.5865 28 1 8.4904 1.3578 0.8297 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8901 -0.5137 31 1 -0.3633 -0.8899 -0.5139 32 1 1.6959 -2.0072 -0.0005 33 1 5.2464 -1.0409 -1.4363 34 1 3.7932 -1.8819 -2.0268 35 1 3.7933 -0.1088 -1.8706 36 1 6.1035 -2.0099 0.3938 37 1 5.5983 -4.7719 0.6983 38 1 5.5972 -4.0203 2.3117 39 1 7.7243 -6.0700 1.3548 40 1 7.5570 -5.2962 2.9493 41 1 9.9669 -5.0227 1.0955 42 1 9.8921 -6.0567 2.5422 43 1 11.7107 -3.0427 3.7326 44 1 11.7810 -4.8151 3.5841 45 1 11.8957 -3.7949 2.1301 46 1 8.1810 -4.1209 4.2278 47 1 9.6122 -5.0054 4.8088 48 1 9.5398 -3.2332 4.9585 49 1 9.9540 -2.5009 1.3550 50 1 9.6113 -1.8053 2.9585 51 1 6.2194 -0.0271 4.0338 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098872745.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:32 Heat of formation + Delta-G solvation = -63.490885 kcal Electronic energy + Delta-G solvation = -30126.180001 eV Core-core repulsion = 26253.720852 eV Total energy + Delta-G solvation = -3872.459149 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.08410 -39.20677 -38.46642 -35.39917 -34.65721 -33.28379 -32.49180 -31.25296 -30.68967 -28.88466 -27.54571 -26.79349 -25.30917 -24.54273 -23.01719 -22.43227 -20.39754 -20.03591 -19.66425 -18.52245 -17.64479 -16.92051 -16.47058 -15.67906 -15.59494 -15.13756 -14.87791 -14.74194 -14.38459 -14.24987 -13.61287 -13.59956 -13.47966 -13.39863 -12.98317 -12.89066 -12.62972 -12.53008 -12.21214 -12.20193 -12.12609 -11.99947 -11.65347 -11.58343 -11.42219 -11.34392 -10.95017 -10.93657 -10.62277 -10.56698 -10.20876 -9.95479 -9.80570 -9.66978 -9.54289 -9.45801 -9.21360 -8.95918 -8.51257 -8.34005 -7.02792 -6.32127 -3.37388 2.72968 3.05242 3.15509 3.41332 3.49020 3.60069 3.85761 4.54359 4.79053 4.86269 5.06859 5.13186 5.19749 5.23857 5.24243 5.29357 5.36888 5.41604 5.43188 5.55245 5.66354 5.72051 5.78392 5.81817 5.90514 5.98608 6.00722 6.02817 6.10644 6.15489 6.22236 6.26116 6.27879 6.31549 6.34336 6.45313 6.51373 6.53304 6.66059 6.71833 6.82005 6.87272 7.02587 7.08170 7.63580 8.03057 8.08313 8.34874 8.38573 8.69202 8.99731 9.56103 10.16669 11.04766 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.016132 B = 0.004091 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.266935 B = 6842.897230 C = 7790.931771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.509 3.491 3 O -0.546 6.546 4 N -0.711 5.711 5 C 0.122 3.878 6 H 0.118 0.882 7 C -0.155 4.155 8 C 0.508 3.492 9 O -0.566 6.566 10 N -0.682 5.682 11 C 0.138 3.862 12 C 0.161 3.839 13 H 0.034 0.966 14 C -0.131 4.131 15 C -0.095 4.095 16 C -0.088 4.088 17 C -0.139 4.139 18 C -0.126 4.126 19 C 0.149 3.851 20 N -0.596 5.596 21 C -0.355 4.355 22 H 0.074 0.926 23 C -0.002 4.002 24 N -0.905 5.905 25 Si 1.035 2.965 26 H -0.295 1.295 27 H -0.276 1.276 28 H -0.300 1.300 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.407 0.593 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.415 0.585 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.047 0.953 45 H 0.049 0.951 46 H 0.067 0.933 47 H 0.034 0.966 48 H 0.047 0.953 49 H 0.027 0.973 50 H 0.066 0.934 51 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.418 -8.531 -7.619 11.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.296 3.704 3 O -0.423 6.423 4 N -0.365 5.365 5 C 0.013 3.987 6 H 0.136 0.864 7 C -0.214 4.214 8 C 0.293 3.707 9 O -0.446 6.446 10 N -0.333 5.333 11 C 0.014 3.986 12 C 0.054 3.946 13 H 0.051 0.949 14 C -0.171 4.171 15 C -0.133 4.133 16 C -0.089 4.089 17 C -0.197 4.197 18 C -0.183 4.183 19 C 0.023 3.977 20 N -0.321 5.321 21 C -0.483 4.483 22 H 0.092 0.908 23 C -0.206 4.206 24 N -0.542 5.542 25 Si 0.866 3.134 26 H -0.222 1.222 27 H -0.201 1.201 28 H -0.228 1.228 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.244 0.756 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.253 0.747 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.086 0.914 47 H 0.054 0.946 48 H 0.066 0.934 49 H 0.045 0.955 50 H 0.084 0.916 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.638 -7.009 -7.665 10.515 hybrid contribution -0.661 -1.410 0.441 1.618 sum -2.299 -8.419 -7.224 11.329 Atomic orbital electron populations 1.21849 0.91655 1.04576 1.04813 1.20798 0.90594 0.83389 0.75613 1.90753 1.70668 1.31334 1.49520 1.45835 1.06118 1.09397 1.75108 1.20769 0.81496 0.98018 0.98372 0.86438 1.22085 1.01981 1.02790 0.94520 1.20367 0.83281 0.87845 0.79251 1.90615 1.55689 1.47060 1.51269 1.45968 1.06062 1.20968 1.60279 1.21248 0.93906 0.85007 0.98442 1.20654 0.91108 0.88585 0.94246 0.94868 1.21927 0.96174 0.97538 1.01412 1.21407 0.95648 0.97155 0.99101 1.21090 0.94079 0.97485 0.96296 1.21826 0.95746 1.01064 1.01046 1.21706 1.01954 0.99481 0.95156 1.21373 0.84876 0.94722 0.96736 1.44329 1.02301 1.23113 1.62349 1.20215 0.96646 0.88017 1.43459 0.90814 1.26099 1.02978 0.92438 0.99078 1.70864 1.23797 1.39945 1.19594 0.84208 0.76247 0.75549 0.77427 1.22191 1.20136 1.22764 0.88844 0.88983 0.90267 0.75629 0.90765 0.92192 0.91127 0.74653 0.92557 0.91671 0.92820 0.91450 0.92760 0.93135 0.92873 0.93357 0.93175 0.91364 0.94650 0.93426 0.95515 0.91617 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 10.30 36.00 0.37 -1.25 16 2 C 0.51 7.53 7.90 -10.99 -0.09 7.45 16 3 O -0.55 -10.56 16.76 5.55 0.09 -10.47 16 4 N -0.71 -10.33 4.95 -54.93 -0.27 -10.61 16 5 C 0.12 2.01 2.98 -69.08 -0.21 1.80 16 6 H 0.12 2.30 7.58 -51.93 -0.39 1.90 16 7 C -0.16 -2.13 9.38 37.16 0.35 -1.78 16 8 C 0.51 9.22 7.22 -10.98 -0.08 9.14 16 9 O -0.57 -11.32 15.84 5.56 0.09 -11.23 16 10 N -0.68 -12.35 3.61 -60.29 -0.22 -12.57 16 11 C 0.14 2.44 4.44 -4.04 -0.02 2.42 16 12 C 0.16 2.79 3.03 -67.82 -0.21 2.58 16 13 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 14 C -0.13 -1.98 5.00 -26.84 -0.13 -2.11 16 15 C -0.10 -1.39 4.71 -26.69 -0.13 -1.51 16 16 C -0.09 -1.43 0.77 -154.39 -0.12 -1.55 16 17 C -0.14 -1.95 8.48 37.16 0.32 -1.63 16 18 C -0.13 -2.14 7.99 37.15 0.30 -1.84 16 19 C 0.15 2.92 2.93 -3.72 -0.01 2.91 16 20 N -0.60 -12.23 2.12 -165.03 -0.35 -12.58 16 21 C -0.36 -8.56 7.07 -15.06 -0.11 -8.66 16 22 H 0.07 1.96 5.98 -52.48 -0.31 1.65 16 23 C 0.00 -0.05 5.08 -17.43 -0.09 -0.14 16 24 N -0.90 -26.38 13.71 55.49 0.76 -25.62 16 25 Si 1.04 24.10 25.58 -169.99 -4.35 19.75 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.28 -5.87 5.72 56.52 0.32 -5.55 16 28 H -0.30 -7.21 7.11 56.52 0.40 -6.80 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.41 5.28 7.79 -40.82 -0.32 4.96 16 33 H 0.07 0.98 7.56 -51.93 -0.39 0.59 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.41 7.75 6.59 -40.82 -0.27 7.48 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.31 7.57 -51.93 -0.39 0.92 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 1.09 6.34 -51.93 -0.33 0.76 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.07 1.30 5.97 -51.93 -0.31 0.99 16 47 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 49 H 0.03 0.53 6.71 -51.93 -0.35 0.18 16 50 H 0.07 1.45 5.48 -51.93 -0.28 1.16 16 51 H 0.27 7.87 8.73 -40.82 -0.36 7.51 16 LS Contribution 388.22 15.07 5.85 5.85 Total: -1.00 -30.70 388.22 -7.17 -37.87 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -8.92 Total: 13.78 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 0.15 Total: 5.82 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -0.08 Total: -61.37 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: 0.18 Total: -21.70 kcal Atomic # 14 Polarization: 24.10 SS G_CDS: -4.35 Total: 19.75 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.70 -7.17 -37.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098872745.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.621 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds