Wall clock time and date at job start Fri Apr 10 2020 18:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47339 * 2 1 4 4 C 1.53001 * 109.46989 * 119.99703 * 2 1 3 5 5 N 1.46900 * 109.47442 * 294.99719 * 4 2 1 6 6 C 1.47006 * 111.00092 * 293.63961 * 5 4 2 7 7 C 1.53100 * 109.25802 * 177.60240 * 6 5 4 8 8 O 1.43019 * 109.25763 * 56.85033 * 7 6 5 9 9 C 1.43014 * 113.73512 * 301.32838 * 8 7 6 10 10 C 1.47008 * 111.00279 * 169.99888 * 5 4 2 11 11 C 1.50694 * 109.47174 * 239.99710 * 2 1 3 12 12 O 1.21283 * 120.00363 * 239.99943 * 11 2 1 13 13 N 1.34784 * 119.99988 * 60.00061 * 11 2 1 14 14 C 1.46493 * 119.99864 * 179.72721 * 13 11 2 15 15 C 1.53001 * 109.47084 * 180.02562 * 14 13 11 16 16 C 1.53786 * 113.61285 * 274.13500 * 15 14 13 17 17 C 1.53957 * 87.02004 * 220.04750 * 16 15 14 18 18 N 1.46501 * 113.53284 * 270.81087 * 17 16 15 19 19 C 1.36940 * 119.99785 * 252.49081 * 18 17 16 20 20 H 1.07996 * 120.00052 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99876 * 180.02562 * 19 18 17 22 22 N 1.31623 * 120.00159 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00010 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47194 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47737 * 119.99596 * 23 21 19 26 26 H 1.48501 * 109.47316 * 239.99930 * 23 21 19 27 27 C 1.53781 * 87.11226 * 25.36138 * 17 16 15 28 28 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47223 * 299.99995 * 1 2 3 30 30 H 1.08995 * 109.47095 * 60.00224 * 1 2 3 31 31 H 1.09003 * 109.46878 * 55.00241 * 4 2 1 32 32 H 1.09001 * 109.47216 * 174.99867 * 4 2 1 33 33 H 1.08997 * 109.50706 * 297.53668 * 6 5 4 34 34 H 1.09001 * 109.51281 * 57.67115 * 6 5 4 35 35 H 1.09001 * 109.51047 * 296.91426 * 7 6 5 36 36 H 1.09006 * 109.54121 * 176.79957 * 7 6 5 37 37 H 1.09001 * 109.51162 * 298.73256 * 9 8 7 38 38 H 1.09001 * 109.54587 * 178.62398 * 9 8 7 39 39 H 1.09008 * 109.50758 * 302.33368 * 10 5 4 40 40 H 1.09000 * 109.50415 * 62.45854 * 10 5 4 41 41 H 0.97000 * 119.99339 * 0.02562 * 13 11 2 42 42 H 1.09007 * 109.47196 * 299.99538 * 14 13 11 43 43 H 1.09006 * 109.47678 * 59.99732 * 14 13 11 44 44 H 1.08995 * 112.85435 * 45.32644 * 15 14 13 45 45 H 1.09003 * 113.60984 * 334.56587 * 16 15 14 46 46 H 1.08996 * 113.61611 * 105.46436 * 16 15 14 47 47 H 1.09002 * 113.73880 * 139.94094 * 17 16 15 48 48 H 0.96999 * 119.99815 * 72.50018 * 18 17 16 49 49 H 0.96994 * 119.99817 * 180.02562 * 22 21 19 50 50 H 1.08997 * 113.61797 * 220.09433 * 27 17 16 51 51 H 1.09003 * 113.61206 * 89.18565 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6514 0.0375 2.4457 6 6 2.3404 1.3353 2.4933 7 6 1.8626 2.1159 3.7207 8 8 2.0961 1.3355 4.8962 9 6 1.4392 0.0652 4.8837 10 6 1.9126 -0.7362 3.6681 11 6 2.0323 -0.7104 -1.2304 12 8 2.7296 -1.6965 -1.1191 13 7 1.7067 -0.2500 -2.4546 14 6 2.2000 -0.9372 -3.6506 15 6 1.6895 -0.2164 -4.8999 16 6 0.2913 -0.6747 -5.3474 17 6 0.8139 -0.5890 -6.7930 18 7 0.6314 0.7300 -7.4038 19 6 -0.3168 0.9093 -8.3755 20 1 -0.9302 0.0784 -8.6912 21 6 -0.4894 2.1590 -8.9546 22 7 0.2579 3.1717 -8.5694 23 14 -1.7832 2.4037 -10.2795 24 1 -2.4845 1.1188 -10.5299 25 1 -2.7642 3.4243 -9.8311 26 1 -1.1292 2.8623 -11.5314 27 6 2.2216 -0.8106 -6.2147 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6053 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2057 33 1 3.4162 1.1739 2.5607 34 1 2.1125 1.9018 1.5904 35 1 0.7967 2.3238 3.6276 36 1 2.4118 3.0547 3.7922 37 1 0.3610 0.2134 4.8245 38 1 1.6820 -0.4799 5.7959 39 1 1.3725 -1.6819 3.6227 40 1 2.9817 -0.9307 3.7542 41 1 1.1494 0.5389 -2.5435 42 1 3.2900 -0.9324 -3.6489 43 1 1.8412 -1.9665 -3.6524 44 1 1.7942 0.8667 -4.8363 45 1 0.0425 -1.6881 -5.0324 46 1 -0.4964 0.0446 -5.1235 47 1 0.4715 -1.4027 -7.4324 48 1 1.1822 1.4763 -7.1200 49 1 0.1370 4.0450 -8.9739 50 1 2.9899 -0.2008 -6.6900 51 1 2.5014 -1.8613 -6.1373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100985761.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:47 Heat of formation + Delta-G solvation = -52.676445 kcal Electronic energy + Delta-G solvation = -27658.117089 eV Core-core repulsion = 23786.126889 eV Total energy + Delta-G solvation = -3871.990200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.39162 -39.63413 -38.56519 -36.55054 -34.69498 -33.52431 -33.02505 -31.56741 -30.18691 -28.39924 -27.29248 -25.46369 -25.08620 -24.45577 -23.84030 -22.70734 -21.59716 -20.78308 -19.89296 -18.39802 -17.64045 -17.28762 -16.58366 -16.39526 -16.11777 -15.83230 -15.48220 -15.32706 -14.96223 -14.90260 -14.49621 -14.27263 -13.87865 -13.83524 -13.41167 -13.17072 -12.99294 -12.91073 -12.51172 -12.34795 -12.25420 -11.99503 -11.94508 -11.78220 -11.54272 -11.40449 -11.14460 -11.06655 -10.89142 -10.88245 -10.51378 -10.17838 -10.09492 -10.07304 -9.74310 -9.72626 -9.46959 -9.01652 -8.91421 -8.79305 -7.03383 -5.84252 -3.13277 2.58383 2.99228 3.39039 3.43638 3.45213 3.47209 3.56710 4.33466 4.48683 4.52196 4.52852 4.63944 4.73123 4.74953 4.84023 4.90368 4.99251 5.03150 5.07618 5.16200 5.21618 5.25201 5.37830 5.38126 5.42164 5.43858 5.46626 5.59167 5.59864 5.63920 5.67444 5.76650 5.84194 5.92508 6.01751 6.08479 6.18495 6.34192 6.40725 6.52372 6.52820 6.56296 6.71254 6.73173 6.87004 7.01112 7.48621 7.66472 8.17643 8.34980 9.45770 10.03163 10.37350 11.38228 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.020881 B = 0.001925 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.636225 B =14539.834564 C =15322.475791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 H 0.096 0.904 4 C 0.076 3.924 5 N -0.535 5.535 6 C 0.011 3.989 7 C 0.064 3.936 8 O -0.387 6.387 9 C 0.064 3.936 10 C 0.018 3.982 11 C 0.515 3.485 12 O -0.549 6.549 13 N -0.721 5.721 14 C 0.131 3.869 15 C -0.119 4.119 16 C -0.168 4.168 17 C 0.167 3.833 18 N -0.706 5.706 19 C -0.242 4.242 20 H 0.073 0.927 21 C -0.014 4.014 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.148 4.148 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.060 0.940 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.044 0.956 41 H 0.403 0.597 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.092 0.908 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.068 0.932 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.998 -5.729 25.315 26.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 H 0.114 0.886 4 C -0.052 4.052 5 N -0.260 5.260 6 C -0.117 4.117 7 C -0.013 4.013 8 O -0.306 6.306 9 C -0.013 4.013 10 C -0.110 4.110 11 C 0.301 3.699 12 O -0.427 6.427 13 N -0.372 5.372 14 C 0.007 3.993 15 C -0.138 4.138 16 C -0.209 4.209 17 C 0.055 3.945 18 N -0.344 5.344 19 C -0.373 4.373 20 H 0.091 0.909 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.740 3.260 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.188 4.188 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.116 0.884 37 H 0.078 0.922 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.062 0.938 41 H 0.237 0.763 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.111 0.889 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.087 0.913 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.968 -6.289 25.341 26.277 hybrid contribution -0.004 0.629 -0.923 1.117 sum 2.965 -5.659 24.417 25.239 Atomic orbital electron populations 1.21677 0.91909 1.02770 1.02908 1.21279 0.98681 1.00641 0.92383 0.88595 1.21864 0.98954 0.96927 0.87453 1.62166 1.57794 1.03921 1.02125 1.22880 0.97054 0.91723 1.00013 1.22673 1.01051 0.93834 0.83731 1.87990 1.73064 1.29480 1.40035 1.22663 0.97040 0.84137 0.97440 1.22773 1.00245 0.97694 0.90289 1.20555 0.79998 0.84584 0.84795 1.90689 1.38390 1.26619 1.87022 1.46069 1.53241 1.32230 1.05666 1.21475 0.98623 0.96139 0.83024 1.22705 0.98474 1.00068 0.92559 1.23906 0.95546 0.99950 1.01476 1.21096 0.92354 0.89810 0.91266 1.42178 1.42865 1.05380 1.44002 1.19340 1.11021 0.94872 1.12038 0.90922 1.24770 0.99869 0.95894 1.00418 1.69670 1.42021 1.00761 1.45605 0.86095 0.80923 0.77602 0.81427 1.20488 1.21834 1.21832 1.23441 0.99709 1.00213 0.95406 0.92337 0.90444 0.92318 0.89800 0.93651 0.93787 0.89277 0.92119 0.88421 0.92166 0.88479 0.89440 0.93820 0.76288 0.91968 0.91614 0.88950 0.91444 0.91507 0.91953 0.78130 0.93487 0.91334 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.98 37.16 0.33 -0.77 16 2 C -0.11 -0.98 2.65 -91.77 -0.24 -1.22 16 3 H 0.10 0.76 6.30 -51.93 -0.33 0.43 16 4 C 0.08 0.71 3.69 -3.82 -0.01 0.69 16 5 N -0.53 -4.29 4.18 -234.31 -0.98 -5.27 16 6 C 0.01 0.08 5.44 -3.71 -0.02 0.06 16 7 C 0.06 0.45 7.01 37.21 0.26 0.71 16 8 O -0.39 -3.43 10.83 -35.23 -0.38 -3.82 16 9 C 0.06 0.44 7.01 37.21 0.26 0.70 16 10 C 0.02 0.13 5.64 -3.71 -0.02 0.11 16 11 C 0.52 6.33 7.15 -10.98 -0.08 6.25 16 12 O -0.55 -8.75 15.92 5.56 0.09 -8.66 16 13 N -0.72 -8.42 5.45 -60.29 -0.33 -8.75 16 14 C 0.13 1.71 5.50 -4.04 -0.02 1.69 16 15 C -0.12 -1.73 3.62 -89.80 -0.33 -2.05 16 16 C -0.17 -2.71 7.44 -25.82 -0.19 -2.90 16 17 C 0.17 3.19 4.57 -67.02 -0.31 2.89 16 18 N -0.71 -17.08 5.31 -52.55 -0.28 -17.35 16 19 C -0.24 -6.55 9.97 -15.06 -0.15 -6.70 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -27.49 13.06 55.49 0.72 -26.77 16 23 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 C -0.15 -2.33 7.39 -25.92 -0.19 -2.52 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.60 7.75 -51.93 -0.40 0.19 16 30 H 0.06 0.46 7.56 -51.93 -0.39 0.06 16 31 H 0.08 0.84 8.04 -51.93 -0.42 0.42 16 32 H 0.05 0.49 7.93 -51.93 -0.41 0.08 16 33 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.58 6.29 -51.93 -0.33 0.26 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.55 8.09 -51.92 -0.42 0.13 16 40 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.40 4.08 7.89 -40.82 -0.32 3.76 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.90 7.88 -51.93 -0.41 0.49 16 44 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 45 H 0.07 0.99 7.92 -51.93 -0.41 0.57 16 46 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.06 1.21 8.10 -51.93 -0.42 0.78 16 48 H 0.38 9.84 7.90 -40.82 -0.32 9.52 16 49 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 50 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 51 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 LS Contribution 402.64 15.07 6.07 6.07 Total: -1.00 -31.73 402.64 -10.12 -41.84 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -9.20 Total: 9.30 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -0.81 Total: -3.53 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -0.86 Total: -58.14 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.29 Total: -12.47 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.73 -10.12 -41.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100985761.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.833 kcal (2) G-P(sol) polarization free energy of solvation -31.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds