Wall clock time and date at job start Fri Apr 10 2020 18:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47339 * 2 1 4 4 C 1.53001 * 109.46989 * 119.99703 * 2 1 3 5 5 N 1.46900 * 109.47442 * 294.99719 * 4 2 1 6 6 C 1.47006 * 111.00092 * 293.63961 * 5 4 2 7 7 C 1.53100 * 109.25802 * 177.60240 * 6 5 4 8 8 O 1.43019 * 109.25763 * 56.85033 * 7 6 5 9 9 C 1.43014 * 113.73512 * 301.32838 * 8 7 6 10 10 C 1.47008 * 111.00279 * 169.99888 * 5 4 2 11 11 C 1.50694 * 109.47174 * 239.99710 * 2 1 3 12 12 O 1.21283 * 120.00363 * 239.99943 * 11 2 1 13 13 N 1.34784 * 119.99988 * 60.00061 * 11 2 1 14 14 C 1.46493 * 119.99864 * 179.72721 * 13 11 2 15 15 C 1.53001 * 109.47084 * 180.02562 * 14 13 11 16 16 C 1.53786 * 113.61285 * 274.13500 * 15 14 13 17 17 C 1.53957 * 87.02004 * 220.04750 * 16 15 14 18 18 N 1.46501 * 113.53284 * 270.81087 * 17 16 15 19 19 C 1.36940 * 119.99785 * 252.49081 * 18 17 16 20 20 H 1.07996 * 120.00052 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99876 * 180.02562 * 19 18 17 22 22 N 1.31623 * 120.00159 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00010 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47194 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47737 * 119.99596 * 23 21 19 26 26 H 1.48501 * 109.47316 * 239.99930 * 23 21 19 27 27 C 1.53781 * 87.11226 * 25.36138 * 17 16 15 28 28 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47223 * 299.99995 * 1 2 3 30 30 H 1.08995 * 109.47095 * 60.00224 * 1 2 3 31 31 H 1.09003 * 109.46878 * 55.00241 * 4 2 1 32 32 H 1.09001 * 109.47216 * 174.99867 * 4 2 1 33 33 H 1.08997 * 109.50706 * 297.53668 * 6 5 4 34 34 H 1.09001 * 109.51281 * 57.67115 * 6 5 4 35 35 H 1.09001 * 109.51047 * 296.91426 * 7 6 5 36 36 H 1.09006 * 109.54121 * 176.79957 * 7 6 5 37 37 H 1.09001 * 109.51162 * 298.73256 * 9 8 7 38 38 H 1.09001 * 109.54587 * 178.62398 * 9 8 7 39 39 H 1.09008 * 109.50758 * 302.33368 * 10 5 4 40 40 H 1.09000 * 109.50415 * 62.45854 * 10 5 4 41 41 H 0.97000 * 119.99339 * 0.02562 * 13 11 2 42 42 H 1.09007 * 109.47196 * 299.99538 * 14 13 11 43 43 H 1.09006 * 109.47678 * 59.99732 * 14 13 11 44 44 H 1.08995 * 112.85435 * 45.32644 * 15 14 13 45 45 H 1.09003 * 113.60984 * 334.56587 * 16 15 14 46 46 H 1.08996 * 113.61611 * 105.46436 * 16 15 14 47 47 H 1.09002 * 113.73880 * 139.94094 * 17 16 15 48 48 H 0.96999 * 119.99815 * 72.50018 * 18 17 16 49 49 H 0.96994 * 119.99817 * 180.02562 * 22 21 19 50 50 H 1.08997 * 113.61797 * 220.09433 * 27 17 16 51 51 H 1.09003 * 113.61206 * 89.18565 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6514 0.0375 2.4457 6 6 2.3404 1.3353 2.4933 7 6 1.8626 2.1159 3.7207 8 8 2.0961 1.3355 4.8962 9 6 1.4392 0.0652 4.8837 10 6 1.9126 -0.7362 3.6681 11 6 2.0323 -0.7104 -1.2304 12 8 2.7296 -1.6965 -1.1191 13 7 1.7067 -0.2500 -2.4546 14 6 2.2000 -0.9372 -3.6506 15 6 1.6895 -0.2164 -4.8999 16 6 0.2913 -0.6747 -5.3474 17 6 0.8139 -0.5890 -6.7930 18 7 0.6314 0.7300 -7.4038 19 6 -0.3168 0.9093 -8.3755 20 1 -0.9302 0.0784 -8.6912 21 6 -0.4894 2.1590 -8.9546 22 7 0.2579 3.1717 -8.5694 23 14 -1.7832 2.4037 -10.2795 24 1 -2.4845 1.1188 -10.5299 25 1 -2.7642 3.4243 -9.8311 26 1 -1.1292 2.8623 -11.5314 27 6 2.2216 -0.8106 -6.2147 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6053 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2057 33 1 3.4162 1.1739 2.5607 34 1 2.1125 1.9018 1.5904 35 1 0.7967 2.3238 3.6276 36 1 2.4118 3.0547 3.7922 37 1 0.3610 0.2134 4.8245 38 1 1.6820 -0.4799 5.7959 39 1 1.3725 -1.6819 3.6227 40 1 2.9817 -0.9307 3.7542 41 1 1.1494 0.5389 -2.5435 42 1 3.2900 -0.9324 -3.6489 43 1 1.8412 -1.9665 -3.6524 44 1 1.7942 0.8667 -4.8363 45 1 0.0425 -1.6881 -5.0324 46 1 -0.4964 0.0446 -5.1235 47 1 0.4715 -1.4027 -7.4324 48 1 1.1822 1.4763 -7.1200 49 1 0.1370 4.0450 -8.9739 50 1 2.9899 -0.2008 -6.6900 51 1 2.5014 -1.8613 -6.1373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100985761.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:46 Heat of formation + Delta-G solvation = -75.215697 kcal Electronic energy + Delta-G solvation = -27659.094464 eV Core-core repulsion = 23786.126889 eV Total energy + Delta-G solvation = -3872.967575 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.27215 -40.44306 -39.84989 -37.26308 -36.00823 -35.01066 -34.02340 -32.13347 -32.00791 -29.21779 -28.42608 -26.43677 -26.20564 -25.66180 -25.02327 -23.76662 -22.76876 -21.44760 -20.81526 -19.75148 -19.32247 -18.39335 -17.37073 -17.06704 -17.03654 -16.72552 -16.65143 -16.14843 -15.98930 -15.84376 -15.74603 -15.53075 -15.10807 -14.87744 -14.62262 -14.35310 -14.19227 -13.74051 -13.61638 -13.28752 -13.16657 -13.03999 -12.94235 -12.91300 -12.65454 -12.59394 -12.32296 -12.23925 -12.12607 -12.04223 -11.80427 -11.54631 -11.47531 -11.45658 -10.99919 -10.88129 -10.69572 -10.62478 -10.05790 -9.45766 -8.99484 -7.95474 -5.23501 1.48353 1.48844 1.58750 1.61118 2.11308 2.55840 2.78463 2.98061 3.37390 3.62205 3.69623 3.75633 3.80043 3.89203 3.92301 4.01528 4.03465 4.15799 4.20274 4.27681 4.30675 4.32792 4.36295 4.41244 4.60875 4.66344 4.72579 4.73970 4.74627 4.78165 4.82680 4.90808 4.93090 4.98417 4.99603 5.01840 5.07507 5.11936 5.29760 5.35878 5.37377 5.49692 5.55733 5.66730 5.85728 5.90663 6.19101 6.28522 6.53811 7.21529 7.33587 8.10663 8.32978 9.27916 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.020881 B = 0.001925 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.636225 B =14539.834564 C =15322.475791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.099 4.099 3 H 0.113 0.887 4 C 0.083 3.917 5 N -0.532 5.532 6 C 0.011 3.989 7 C 0.063 3.937 8 O -0.408 6.408 9 C 0.064 3.936 10 C 0.017 3.983 11 C 0.514 3.486 12 O -0.587 6.587 13 N -0.716 5.716 14 C 0.140 3.860 15 C -0.101 4.101 16 C -0.151 4.151 17 C 0.143 3.857 18 N -0.719 5.719 19 C -0.241 4.241 20 H 0.076 0.924 21 C -0.076 4.076 22 N -0.968 5.968 23 Si 0.972 3.028 24 H -0.267 1.267 25 H -0.293 1.293 26 H -0.295 1.295 27 C -0.136 4.136 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.026 0.974 33 H 0.032 0.968 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.066 0.934 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.033 0.967 41 H 0.412 0.588 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.050 0.950 47 H 0.059 0.941 48 H 0.374 0.626 49 H 0.251 0.749 50 H 0.057 0.943 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.150 -6.255 26.250 27.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.120 4.120 3 H 0.131 0.869 4 C -0.045 4.045 5 N -0.257 5.257 6 C -0.117 4.117 7 C -0.013 4.013 8 O -0.327 6.327 9 C -0.012 4.012 10 C -0.111 4.111 11 C 0.302 3.698 12 O -0.468 6.468 13 N -0.367 5.367 14 C 0.016 3.984 15 C -0.120 4.120 16 C -0.192 4.192 17 C 0.033 3.967 18 N -0.357 5.357 19 C -0.372 4.372 20 H 0.094 0.906 21 C -0.268 4.268 22 N -0.619 5.619 23 Si 0.801 3.199 24 H -0.191 1.191 25 H -0.221 1.221 26 H -0.223 1.223 27 C -0.175 4.175 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.128 0.872 37 H 0.084 0.916 38 H 0.130 0.870 39 H 0.115 0.885 40 H 0.051 0.949 41 H 0.248 0.752 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.100 0.900 45 H 0.108 0.892 46 H 0.068 0.932 47 H 0.077 0.923 48 H 0.207 0.793 49 H 0.060 0.940 50 H 0.076 0.924 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.102 -6.852 26.295 27.254 hybrid contribution 0.289 0.704 -1.179 1.403 sum 2.391 -6.148 25.116 25.968 Atomic orbital electron populations 1.21636 0.90771 1.02518 1.03648 1.21246 0.99353 1.00878 0.90561 0.86944 1.21729 0.97653 0.96869 0.88280 1.62207 1.57559 1.04071 1.01871 1.22933 0.96338 0.91577 1.00882 1.22781 1.01617 0.94029 0.82918 1.87963 1.73574 1.30310 1.40868 1.22774 0.97177 0.83529 0.97761 1.22836 0.99788 0.98251 0.90271 1.21067 0.79167 0.84064 0.85543 1.90675 1.40164 1.28426 1.87534 1.46014 1.53054 1.32341 1.05252 1.21277 0.98429 0.95923 0.82756 1.22480 0.97110 0.99505 0.92888 1.23717 0.95800 1.00863 0.98812 1.21429 0.95332 0.87467 0.92479 1.42301 1.42363 1.06966 1.44112 1.19704 1.10856 0.94819 1.11858 0.90566 1.25540 1.02299 0.95919 1.03040 1.69812 1.43954 1.00951 1.47197 0.85092 0.78494 0.77714 0.78568 1.19088 1.22065 1.22251 1.23348 0.97219 1.01761 0.95159 0.93077 0.89566 0.91673 0.90623 0.95556 0.94955 0.88177 0.91521 0.87158 0.91621 0.86984 0.88497 0.94880 0.75210 0.92172 0.91566 0.90003 0.89166 0.93155 0.92284 0.79339 0.94040 0.92433 0.87787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 8.98 71.98 0.65 -1.17 16 2 C -0.10 -1.64 2.65 -11.54 -0.03 -1.67 16 3 H 0.11 1.53 6.30 -2.39 -0.02 1.51 16 4 C 0.08 1.49 3.69 86.30 0.32 1.81 16 5 N -0.53 -7.90 4.18 -895.23 -3.74 -11.64 16 6 C 0.01 0.15 5.44 86.32 0.47 0.62 16 7 C 0.06 0.79 7.01 72.02 0.50 1.30 16 8 O -0.41 -6.74 10.83 -148.98 -1.61 -8.35 16 9 C 0.06 0.78 7.01 72.01 0.50 1.29 16 10 C 0.02 0.23 5.64 86.32 0.49 0.71 16 11 C 0.51 12.00 7.15 87.65 0.63 12.63 16 12 O -0.59 -18.35 15.92 -3.04 -0.05 -18.39 16 13 N -0.72 -15.48 5.45 -463.05 -2.52 -18.00 16 14 C 0.14 3.40 5.50 86.38 0.47 3.87 16 15 C -0.10 -2.77 3.62 -10.26 -0.04 -2.81 16 16 C -0.15 -4.64 7.44 31.18 0.23 -4.40 16 17 C 0.14 5.33 4.57 45.58 0.21 5.53 16 18 N -0.72 -34.90 5.31 -320.16 -1.70 -36.60 16 19 C -0.24 -13.03 9.97 84.03 0.84 -12.19 16 20 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 21 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 22 N -0.97 -57.95 13.06 21.65 0.28 -57.66 16 23 Si 0.97 45.30 29.55 68.60 2.03 47.32 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 26 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 27 C -0.14 -4.05 7.39 31.12 0.23 -3.82 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.09 1.11 7.75 -2.39 -0.02 1.09 16 30 H 0.06 0.85 7.56 -2.39 -0.02 0.83 16 31 H 0.08 1.48 8.04 -2.39 -0.02 1.46 16 32 H 0.03 0.57 7.93 -2.39 -0.02 0.55 16 33 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.10 1.11 6.29 -2.39 -0.02 1.10 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.10 1.11 8.09 -2.38 -0.02 1.10 16 40 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.41 7.52 7.89 -92.71 -0.73 6.79 16 42 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 43 H 0.07 1.65 7.88 -2.38 -0.02 1.63 16 44 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.09 2.38 7.92 -2.39 -0.02 2.36 16 46 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 47 H 0.06 2.22 8.10 -2.39 -0.02 2.20 16 48 H 0.37 19.45 7.90 -92.71 -0.73 18.72 16 49 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 50 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 51 H 0.10 2.57 8.10 -2.39 -0.02 2.55 16 Total: -1.00 -68.15 402.64 -1.93 -70.07 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: -0.55 Total: 35.36 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 5.94 Total: -2.10 kcal Atomic # 7 Polarization: -116.23 SS G_CDS: -7.68 Total: -123.91 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -1.66 Total: -26.75 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -68.15 -1.93 -70.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100985761.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.143 kcal (2) G-P(sol) polarization free energy of solvation -68.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds