Wall clock time and date at job start Fri Apr 10 2020 18:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21288 * 119.99844 * 2 1 4 4 N 1.34775 * 120.00202 * 180.02562 * 2 1 3 5 5 C 1.46924 * 120.62563 * 354.54732 * 4 2 1 6 6 C 1.53195 * 108.77460 * 233.62842 * 5 4 2 7 7 C 1.53039 * 109.31360 * 305.36913 * 6 5 4 8 8 C 1.53006 * 109.45936 * 181.38349 * 7 6 5 9 9 C 1.53006 * 109.46901 * 59.99925 * 8 7 6 10 10 C 1.53003 * 109.47111 * 300.00214 * 8 7 6 11 11 C 1.52994 * 109.47041 * 179.97438 * 8 7 6 12 12 N 1.46903 * 109.46976 * 179.97438 * 11 8 7 13 13 C 1.46902 * 110.99834 * 179.97438 * 12 11 8 14 14 C 1.50697 * 109.47211 * 180.02562 * 13 12 11 15 15 O 1.21302 * 119.99805 * 0.02562 * 14 13 12 16 16 N 1.34767 * 120.00486 * 180.02562 * 14 13 12 17 17 C 1.37099 * 120.00805 * 180.02562 * 16 14 13 18 18 H 1.08010 * 119.99420 * 0.02562 * 17 16 14 19 19 C 1.38944 * 120.00806 * 179.97438 * 17 16 14 20 20 N 1.31407 * 120.00483 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99506 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.46935 * 90.00039 * 21 19 17 23 23 H 1.48503 * 109.46848 * 209.99553 * 21 19 17 24 24 H 1.48499 * 109.47333 * 329.99710 * 21 19 17 25 25 C 1.53039 * 109.53856 * 61.36571 * 7 6 5 26 26 C 1.46924 * 120.63203 * 174.57216 * 4 2 1 27 27 H 1.09006 * 109.47049 * 274.66286 * 1 2 3 28 28 H 1.08997 * 109.46893 * 34.66061 * 1 2 3 29 29 H 1.08989 * 109.47253 * 154.66671 * 1 2 3 30 30 H 1.09003 * 109.58505 * 113.84459 * 5 4 2 31 31 H 1.08999 * 109.70727 * 353.48863 * 5 4 2 32 32 H 1.09000 * 109.49749 * 185.41448 * 6 5 4 33 33 H 1.09006 * 109.49367 * 65.32184 * 6 5 4 34 34 H 1.08997 * 109.45839 * 301.35341 * 7 6 5 35 35 H 1.08999 * 109.46574 * 180.02562 * 9 8 7 36 36 H 1.08997 * 109.47080 * 300.00123 * 9 8 7 37 37 H 1.08994 * 109.46946 * 60.00251 * 9 8 7 38 38 H 1.09003 * 109.46710 * 299.99950 * 10 8 7 39 39 H 1.08997 * 109.47284 * 59.99623 * 10 8 7 40 40 H 1.08997 * 109.46769 * 179.97438 * 10 8 7 41 41 H 1.09003 * 109.46892 * 60.00307 * 11 8 7 42 42 H 1.08994 * 109.47477 * 300.00160 * 11 8 7 43 43 H 1.00900 * 110.99646 * 56.04689 * 12 11 8 44 44 H 1.08997 * 109.47549 * 300.00087 * 13 12 11 45 45 H 1.09007 * 109.46852 * 60.00509 * 13 12 11 46 46 H 0.97008 * 120.00080 * 0.02562 * 16 14 13 47 47 H 0.97002 * 120.00428 * 180.02562 * 20 19 17 48 48 H 1.08996 * 109.49715 * 58.58481 * 25 7 6 49 49 H 1.08997 * 109.49742 * 178.68197 * 25 7 6 50 50 H 1.08997 * 109.58613 * 246.15458 * 26 4 2 51 51 H 1.08998 * 109.58451 * 6.58260 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4652 -2.4447 0.1190 6 6 2.0690 -3.2413 1.2800 7 6 3.5777 -3.3836 1.0657 8 6 4.1789 -4.2083 2.2056 9 6 3.5336 -5.5954 2.2269 10 6 3.9171 -3.5035 3.5381 11 6 5.6870 -4.3512 1.9913 12 7 6.2643 -5.1425 3.0861 13 6 7.7145 -5.3012 2.9129 14 6 8.2700 -6.1169 4.0518 15 8 7.5306 -6.5261 4.9220 16 7 9.5884 -6.3916 4.1037 17 6 10.0938 -7.1341 5.1395 18 1 9.4352 -7.4992 5.9139 19 6 11.4529 -7.4178 5.1927 20 7 11.9372 -8.1299 6.1853 21 14 12.5918 -6.7870 3.8530 22 1 13.1094 -5.4481 4.2334 23 1 13.7284 -7.7279 3.6860 24 1 11.8429 -6.6835 2.5749 25 6 4.2245 -1.9968 1.0435 26 6 3.6452 -1.1861 -0.1201 27 1 -0.3633 0.0835 1.0243 28 1 -0.3633 0.8453 -0.5844 29 1 -0.3633 -0.9287 -0.4397 30 1 1.5709 -3.0108 -0.8065 31 1 0.4093 -2.2576 0.3144 32 1 1.6122 -4.2302 1.3190 33 1 1.8825 -2.7166 2.2170 34 1 3.7638 -3.8862 0.1165 35 1 3.9616 -6.1827 3.0393 36 1 2.4591 -5.4939 2.3793 37 1 3.7201 -6.0975 1.2777 38 1 4.3768 -2.5152 3.5229 39 1 2.8426 -3.4020 3.6906 40 1 4.3450 -4.0912 4.3502 41 1 6.1470 -3.3631 1.9758 42 1 5.8731 -4.8535 1.0420 43 1 5.8092 -6.0397 3.1627 44 1 7.9143 -5.8108 1.9703 45 1 8.1888 -4.3198 2.9032 46 1 10.1799 -6.0641 3.4081 47 1 12.8861 -8.3277 6.2226 48 1 4.0177 -1.4839 1.9828 49 1 5.3018 -2.0999 0.9143 50 1 3.9286 -1.6495 -1.0651 51 1 4.0281 -0.1663 -0.0814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101501455.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:54 Heat of formation + Delta-G solvation = -77.025505 kcal Electronic energy + Delta-G solvation = -28304.058401 eV Core-core repulsion = 24431.012347 eV Total energy + Delta-G solvation = -3873.046054 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.75723 -39.22004 -38.33382 -36.58197 -34.44275 -33.74576 -32.33748 -31.66511 -31.16030 -29.69274 -27.62657 -27.34742 -25.81471 -24.88580 -23.57645 -22.84399 -21.53091 -19.55644 -19.36225 -18.59914 -18.22597 -17.38679 -16.29926 -16.14710 -15.92368 -15.60137 -15.31644 -14.85036 -14.68268 -14.47278 -14.17604 -14.16968 -13.75099 -13.62336 -13.44421 -13.29792 -12.99212 -12.96299 -12.56658 -12.52729 -12.36172 -12.27797 -12.01129 -11.93159 -11.74498 -11.67039 -11.52136 -11.25517 -11.14237 -11.05197 -10.60040 -10.55684 -10.39155 -10.30133 -10.06092 -9.97060 -9.56831 -9.00101 -8.56707 -8.18419 -8.08649 -6.30845 -3.82217 2.27593 2.64763 3.02346 3.07122 3.15029 3.75119 4.04443 4.10608 4.18236 4.30318 4.45139 4.53628 4.69521 4.75451 4.77929 4.85221 4.92271 4.95845 5.01515 5.05985 5.13894 5.17822 5.22350 5.30480 5.42660 5.45981 5.52583 5.54380 5.58677 5.64683 5.68379 5.71466 5.73708 5.79221 5.83953 5.91948 5.96083 6.00137 6.05807 6.12239 6.20704 6.33179 6.55960 7.03917 7.14253 7.58717 7.62452 7.82005 8.15049 8.60332 8.95424 9.42984 9.83562 10.82300 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.027160 B = 0.002103 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.673787 B =13314.143317 C =13891.992189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.511 3.489 3 O -0.550 6.550 4 N -0.612 5.612 5 C 0.104 3.896 6 C -0.133 4.133 7 C -0.074 4.074 8 C -0.054 4.054 9 C -0.149 4.149 10 C -0.136 4.136 11 C 0.066 3.934 12 N -0.666 5.666 13 C 0.048 3.952 14 C 0.450 3.550 15 O -0.565 6.565 16 N -0.591 5.591 17 C -0.305 4.305 18 H 0.119 0.881 19 C 0.041 3.959 20 N -0.882 5.882 21 Si 0.880 3.120 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.270 1.270 25 C -0.134 4.134 26 C 0.110 3.890 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.024 0.976 43 H 0.349 0.651 44 H 0.042 0.958 45 H 0.086 0.914 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.073 0.927 49 H 0.078 0.922 50 H 0.065 0.935 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.065 11.698 -17.106 30.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.300 3.700 3 O -0.428 6.428 4 N -0.346 5.346 5 C -0.018 4.018 6 C -0.171 4.171 7 C -0.094 4.094 8 C -0.054 4.054 9 C -0.206 4.206 10 C -0.193 4.193 11 C -0.063 4.063 12 N -0.299 5.299 13 C -0.085 4.085 14 C 0.236 3.764 15 O -0.447 6.447 16 N -0.231 5.231 17 C -0.433 4.433 18 H 0.137 0.863 19 C -0.162 4.162 20 N -0.522 5.522 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.196 1.196 25 C -0.172 4.172 26 C -0.013 4.013 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.042 0.958 43 H 0.170 0.830 44 H 0.060 0.940 45 H 0.104 0.896 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.092 0.908 49 H 0.097 0.903 50 H 0.083 0.917 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.996 12.402 -15.976 29.881 hybrid contribution 1.224 -0.381 -1.750 2.170 sum -20.772 12.021 -17.726 29.836 Atomic orbital electron populations 1.21967 0.91968 1.04669 1.04944 1.20822 0.90628 0.83098 0.75403 1.90719 1.70716 1.31143 1.50210 1.48186 1.07554 1.06156 1.72726 1.21849 0.96602 0.84198 0.99188 1.22097 0.95904 1.00597 0.98529 1.21134 0.94329 0.95304 0.98587 1.20512 0.94099 0.95281 0.95513 1.21973 1.00639 0.96110 1.01901 1.21852 1.00204 1.00443 0.96837 1.22078 0.93925 0.98518 0.91774 1.60121 1.02222 1.23431 1.44151 1.21700 0.89889 1.00378 0.96563 1.19734 0.82766 0.85287 0.88608 1.90562 1.57842 1.55580 1.40683 1.42213 1.07007 1.49434 1.24434 1.19430 0.93354 1.27899 1.02650 0.86298 1.25039 0.96770 0.97145 0.97249 1.69619 1.14258 1.37772 1.30526 0.86669 0.81423 0.79642 0.81622 1.19591 1.20205 1.19562 1.22102 1.00499 0.95536 0.99018 1.21636 0.79165 1.02189 0.98275 0.88801 0.88939 0.89993 0.91346 0.89469 0.90136 0.90822 0.91170 0.91603 0.92351 0.93087 0.92911 0.93508 0.90815 0.90915 0.95751 0.82975 0.93976 0.89594 0.79712 0.91629 0.90823 0.90305 0.91654 0.89084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.89 9.48 36.01 0.34 -0.55 16 2 C 0.51 4.74 7.80 -10.99 -0.09 4.65 16 3 O -0.55 -7.58 16.52 5.55 0.09 -7.49 16 4 N -0.61 -4.69 2.97 -172.77 -0.51 -5.20 16 5 C 0.10 0.52 6.15 -3.71 -0.02 0.49 16 6 C -0.13 -0.77 4.65 -26.61 -0.12 -0.90 16 7 C -0.07 -0.53 1.51 -90.58 -0.14 -0.67 16 8 C -0.05 -0.49 0.39 -154.50 -0.06 -0.55 16 9 C -0.15 -1.32 7.79 37.16 0.29 -1.03 16 10 C -0.14 -1.42 7.61 37.16 0.28 -1.13 16 11 C 0.07 0.73 4.30 -3.83 -0.02 0.71 16 12 N -0.67 -9.91 5.34 -115.06 -0.61 -10.52 16 13 C 0.05 0.78 6.17 -4.98 -0.03 0.75 16 14 C 0.45 10.20 7.82 -10.99 -0.09 10.12 16 15 O -0.56 -15.11 15.78 5.54 0.09 -15.02 16 16 N -0.59 -14.12 5.09 -10.96 -0.06 -14.18 16 17 C -0.30 -8.65 10.16 -14.93 -0.15 -8.80 16 18 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 19 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 20 N -0.88 -25.83 13.96 55.50 0.77 -25.05 16 21 Si 0.88 19.43 27.74 -169.99 -4.71 14.71 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 25 C -0.13 -1.05 4.65 -26.61 -0.12 -1.17 16 26 C 0.11 0.89 6.44 -3.71 -0.02 0.86 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.23 6.19 -51.94 -0.32 -0.09 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.27 5.63 -51.93 -0.29 -0.02 16 32 H 0.08 0.40 6.36 -51.93 -0.33 0.07 16 33 H 0.07 0.50 6.51 -51.93 -0.34 0.16 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.71 6.57 -51.93 -0.34 0.37 16 36 H 0.06 0.44 6.40 -51.93 -0.33 0.11 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.56 6.46 -51.93 -0.34 0.23 16 39 H 0.05 0.42 6.46 -51.93 -0.34 0.09 16 40 H 0.07 0.97 7.60 -51.93 -0.39 0.57 16 41 H 0.07 0.79 6.40 -51.93 -0.33 0.45 16 42 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.35 5.44 6.47 -39.29 -0.25 5.19 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.37 7.76 5.76 -40.82 -0.24 7.53 16 47 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.07 0.68 6.51 -51.93 -0.34 0.34 16 49 H 0.08 0.61 6.36 -51.93 -0.33 0.28 16 50 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.09 0.90 7.00 -51.93 -0.36 0.54 16 LS Contribution 384.19 15.07 5.79 5.79 Total: -1.00 -34.78 384.19 -7.44 -42.22 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -8.24 Total: 10.92 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -0.04 Total: 3.83 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.41 Total: -54.95 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: 0.18 Total: -22.51 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.71 Total: 14.71 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.78 -7.44 -42.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101501455.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.809 kcal (2) G-P(sol) polarization free energy of solvation -34.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds