Wall clock time and date at job start Fri Apr 10 2020 18:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46895 * 109.47253 * 2 1 4 4 C 1.47016 * 111.03695 * 46.34429 * 3 2 1 5 5 C 1.53097 * 109.29322 * 182.34548 * 4 3 2 6 6 O 1.43017 * 109.26371 * 303.17468 * 5 4 3 7 7 C 1.43015 * 113.73364 * 58.66903 * 6 5 4 8 8 C 1.47017 * 110.99906 * 170.00329 * 3 2 1 9 9 H 1.09000 * 109.50680 * 297.58864 * 8 3 2 10 10 C 1.50703 * 109.50743 * 57.67367 * 8 3 2 11 11 O 1.21277 * 119.99892 * 359.91656 * 10 8 3 12 12 N 1.34776 * 119.99819 * 179.90895 * 10 8 3 13 13 C 1.48148 * 127.83333 * 179.97438 * 12 10 8 14 14 C 1.54395 * 104.61749 * 219.58894 * 13 12 10 15 15 H 1.09002 * 110.42770 * 95.04881 * 14 13 12 16 16 C 1.52991 * 110.34516 * 217.26451 * 14 13 12 17 17 N 1.46504 * 109.47351 * 290.54166 * 16 14 13 18 18 C 1.36935 * 119.99849 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00561 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99619 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00303 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00121 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46845 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47399 * 119.99829 * 22 20 18 25 25 H 1.48498 * 109.47295 * 240.00436 * 22 20 18 26 26 C 1.54289 * 104.95917 * 336.13889 * 14 13 12 27 27 H 1.08997 * 110.34024 * 241.01861 * 26 14 13 28 28 C 1.52997 * 110.34193 * 118.86730 * 26 14 13 29 29 C 1.48143 * 127.84273 * 359.97438 * 12 10 8 30 30 H 1.09006 * 109.47299 * 59.99370 * 1 2 3 31 31 H 1.08991 * 109.47609 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.46609 * 300.00088 * 1 2 3 33 33 H 1.09004 * 109.46794 * 240.00607 * 2 1 3 34 34 H 1.08997 * 109.47290 * 120.00454 * 2 1 3 35 35 H 1.09002 * 109.47064 * 62.41404 * 4 3 2 36 36 H 1.08995 * 109.54251 * 302.32405 * 4 3 2 37 37 H 1.09001 * 109.50438 * 183.23858 * 5 4 3 38 38 H 1.09007 * 109.54418 * 63.13423 * 5 4 3 39 39 H 1.09000 * 109.50245 * 181.39450 * 7 6 5 40 40 H 1.09001 * 109.54295 * 61.28795 * 7 6 5 41 41 H 1.09004 * 110.40258 * 100.81235 * 13 12 10 42 42 H 1.08993 * 110.41204 * 338.37828 * 13 12 10 43 43 H 1.09000 * 109.47369 * 170.54047 * 16 14 13 44 44 H 1.09002 * 109.46959 * 50.53729 * 16 14 13 45 45 H 0.96996 * 119.99617 * 359.97438 * 17 16 14 46 46 H 0.97000 * 119.99517 * 0.02562 * 21 20 18 47 47 H 1.09006 * 109.47153 * 59.99950 * 28 26 14 48 48 H 1.09000 * 109.47067 * 179.97438 * 28 26 14 49 49 H 1.08997 * 109.47470 * 300.00186 * 28 26 14 50 50 H 1.09007 * 110.40735 * 21.61687 * 29 12 10 51 51 H 1.09002 * 110.40274 * 259.19616 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.3025 2.1983 0.9928 5 6 1.8020 3.6436 0.9186 6 8 3.2174 3.6647 1.1220 7 6 3.9473 2.8841 0.1716 8 6 3.4697 1.4310 0.2383 9 1 3.6898 1.0204 1.2236 10 6 4.1788 0.6194 -0.8151 11 8 3.5401 0.0562 -1.6787 12 7 5.5227 0.5195 -0.7974 13 6 6.3910 -0.2258 -1.7384 14 6 7.4842 -0.8527 -0.8465 15 1 7.2147 -1.8734 -0.5749 16 6 8.8339 -0.8338 -1.5667 17 7 8.8034 -1.7785 -2.6861 18 6 9.9077 -1.9344 -3.4806 19 1 10.8010 -1.3607 -3.2825 20 6 9.8790 -2.8299 -4.5409 21 7 8.7905 -3.5294 -4.7822 22 14 11.3851 -3.0421 -5.6253 23 1 12.4696 -2.1477 -5.1467 24 1 11.8445 -4.4529 -5.5639 25 1 11.0388 -2.6947 -7.0270 26 6 7.5342 0.0412 0.4101 27 1 8.5209 0.4923 0.5152 28 6 7.1878 -0.7746 1.6572 29 6 6.4669 1.1301 0.1672 30 1 -0.3634 0.5140 -0.8900 31 1 -0.3634 -1.0275 -0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.4874 1.8001 1.9905 36 1 0.2334 2.1714 0.7824 37 1 1.3142 4.2373 1.6917 38 1 1.5689 4.0601 -0.0615 39 1 5.0112 2.9286 0.4045 40 1 3.7773 3.2775 -0.8307 41 1 6.8366 0.4544 -2.4643 42 1 5.8215 -1.0045 -2.2456 43 1 9.6215 -1.1211 -0.8702 44 1 9.0305 0.1699 -1.9437 45 1 8.0013 -2.2940 -2.8638 46 1 8.0083 -3.4190 -4.2193 47 1 7.9051 -1.5875 1.7705 48 1 7.2277 -0.1302 2.5355 49 1 6.1842 -1.1873 1.5543 50 1 5.9545 1.3745 1.0978 51 1 6.9242 2.0219 -0.2614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106350713.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:13 Heat of formation + Delta-G solvation = -72.651651 kcal Electronic energy + Delta-G solvation = -29430.530044 eV Core-core repulsion = 25557.673655 eV Total energy + Delta-G solvation = -3872.856390 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.91572 -40.39828 -39.06322 -37.16485 -36.73074 -34.45614 -33.04431 -32.89299 -31.69151 -30.47315 -27.99500 -27.63494 -26.94091 -25.70603 -24.93368 -23.34170 -22.74139 -21.74310 -21.06580 -20.46112 -19.30696 -18.46437 -17.69719 -17.49698 -17.13480 -16.75268 -16.42230 -16.18285 -15.96434 -15.82174 -15.71004 -15.33844 -15.24548 -14.98519 -14.80029 -14.43375 -14.09881 -13.92443 -13.85510 -13.59655 -13.09936 -12.94042 -12.86853 -12.86678 -12.72022 -12.60446 -12.44024 -12.41371 -12.09408 -11.93389 -11.83912 -11.78453 -11.64969 -11.58172 -11.20077 -11.05427 -10.95552 -10.56582 -9.88203 -9.45058 -9.12721 -8.41325 -5.35439 1.38581 1.57469 1.64682 1.69549 1.80797 2.56860 2.70358 2.80335 3.26237 3.39324 3.46119 3.57477 3.59409 3.71446 3.83846 3.87792 4.00256 4.05998 4.12617 4.16073 4.23779 4.27215 4.33799 4.40030 4.43107 4.48086 4.52190 4.55926 4.62315 4.68843 4.71981 4.74436 4.80578 4.88720 4.90642 4.94137 4.95974 5.10939 5.16524 5.18703 5.18982 5.23338 5.43915 5.58382 5.72758 5.91494 5.98575 6.43403 6.46797 6.98995 7.07283 7.97429 8.09052 9.10545 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.019182 B = 0.002764 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.378658 B =10129.383367 C =10756.936143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.038 3.962 3 N -0.533 5.533 4 C 0.014 3.986 5 C 0.056 3.944 6 O -0.384 6.384 7 C 0.076 3.924 8 C 0.046 3.954 9 H 0.086 0.914 10 C 0.533 3.467 11 O -0.565 6.565 12 N -0.617 5.617 13 C 0.122 3.878 14 C -0.093 4.093 15 H 0.064 0.936 16 C 0.169 3.831 17 N -0.760 5.760 18 C -0.331 4.331 19 H 0.071 0.929 20 C -0.109 4.109 21 N -0.978 5.978 22 Si 1.133 2.867 23 H -0.268 1.268 24 H -0.291 1.291 25 H -0.293 1.293 26 C -0.092 4.092 27 H 0.110 0.890 28 C -0.138 4.138 29 C 0.097 3.903 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.026 0.974 35 H 0.049 0.951 36 H 0.112 0.888 37 H 0.129 0.871 38 H 0.058 0.942 39 H 0.126 0.874 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.045 0.955 43 H 0.029 0.971 44 H 0.029 0.971 45 H 0.357 0.643 46 H 0.242 0.758 47 H 0.053 0.947 48 H 0.085 0.915 49 H 0.040 0.960 50 H 0.109 0.891 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.349 16.453 19.937 29.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.089 4.089 3 N -0.260 5.260 4 C -0.113 4.113 5 C -0.021 4.021 6 O -0.302 6.302 7 C -0.001 4.001 8 C -0.066 4.066 9 H 0.103 0.897 10 C 0.322 3.678 11 O -0.444 6.444 12 N -0.351 5.351 13 C -0.001 4.001 14 C -0.113 4.113 15 H 0.082 0.918 16 C 0.043 3.957 17 N -0.405 5.405 18 C -0.463 4.463 19 H 0.089 0.911 20 C -0.299 4.299 21 N -0.626 5.626 22 Si 0.958 3.042 23 H -0.192 1.192 24 H -0.218 1.218 25 H -0.220 1.220 26 C -0.111 4.111 27 H 0.128 0.872 28 C -0.195 4.195 29 C -0.024 4.024 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.044 0.956 35 H 0.067 0.933 36 H 0.130 0.870 37 H 0.147 0.853 38 H 0.077 0.923 39 H 0.143 0.857 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.189 0.811 46 H 0.053 0.947 47 H 0.072 0.928 48 H 0.104 0.896 49 H 0.059 0.941 50 H 0.127 0.873 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.991 15.842 17.950 27.239 hybrid contribution -0.924 -0.604 1.184 1.618 sum -13.915 15.238 19.134 28.141 Atomic orbital electron populations 1.21858 0.92978 1.02652 1.02711 1.22381 0.97301 0.88257 1.00996 1.62030 1.01225 1.12677 1.50063 1.23051 1.00723 0.94071 0.93453 1.22963 0.80454 0.95327 1.03327 1.88011 1.19366 1.69326 1.53533 1.22722 0.97630 0.86042 0.93716 1.22186 0.90101 0.98033 0.96298 0.89658 1.20415 0.80386 0.80937 0.86049 1.90642 1.65148 1.48818 1.39779 1.49082 1.04523 1.50699 1.30767 1.22154 0.90563 0.95172 0.92242 1.22233 0.93895 0.99490 0.95703 0.91758 1.20833 0.94502 0.92289 0.88096 1.42671 1.14119 1.49236 1.34430 1.20455 0.93879 1.21854 1.10065 0.91123 1.27268 1.05874 0.96274 1.00510 1.70941 1.04009 1.45146 1.42510 0.82549 0.71395 0.76146 0.74087 1.19217 1.21842 1.21988 1.22126 1.00484 0.95128 0.93377 0.87239 1.21813 1.00710 1.00174 0.96789 1.22945 0.89694 0.96381 0.93416 0.92274 0.91538 0.90701 0.90707 0.95556 0.93291 0.87031 0.85311 0.92325 0.85656 0.92794 0.91468 0.93623 0.95290 0.95304 0.81098 0.94749 0.92759 0.89570 0.94082 0.87293 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.18 71.98 0.66 -1.81 16 2 C 0.04 0.88 5.34 86.30 0.46 1.34 16 3 N -0.53 -11.69 4.51 -874.39 -3.94 -15.63 16 4 C 0.01 0.21 4.94 86.31 0.43 0.63 16 5 C 0.06 0.74 7.01 72.01 0.50 1.24 16 6 O -0.38 -6.59 10.83 -148.98 -1.61 -8.21 16 7 C 0.08 1.37 6.01 72.02 0.43 1.80 16 8 C 0.05 0.99 1.68 44.18 0.07 1.06 16 9 H 0.09 1.63 7.95 -2.39 -0.02 1.61 16 10 C 0.53 15.56 7.00 87.66 0.61 16.17 16 11 O -0.57 -21.77 13.97 -3.02 -0.04 -21.81 16 12 N -0.62 -16.31 3.31 -807.92 -2.67 -18.98 16 13 C 0.12 4.06 6.41 86.54 0.55 4.61 16 14 C -0.09 -2.86 2.75 -9.89 -0.03 -2.88 16 15 H 0.06 2.20 7.71 -2.39 -0.02 2.18 16 16 C 0.17 6.45 5.38 86.38 0.46 6.92 16 17 N -0.76 -38.82 5.48 -343.46 -1.88 -40.70 16 18 C -0.33 -18.83 9.99 84.03 0.84 -17.99 16 19 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 20 C -0.11 -6.43 5.50 84.86 0.47 -5.96 16 21 N -0.98 -63.11 13.70 21.65 0.30 -62.81 16 22 Si 1.13 52.88 29.92 68.60 2.05 54.93 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 25 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 26 C -0.09 -1.83 3.31 -9.88 -0.03 -1.87 16 27 H 0.11 1.88 7.71 -2.39 -0.02 1.87 16 28 C -0.14 -2.42 8.90 71.98 0.64 -1.78 16 29 C 0.10 1.68 4.84 86.54 0.42 2.10 16 30 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 0.94 6.28 -2.38 -0.01 0.92 16 33 H 0.07 2.36 5.49 -2.39 -0.01 2.35 16 34 H 0.03 0.59 8.08 -2.39 -0.02 0.57 16 35 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.11 1.29 6.06 -2.39 -0.01 1.27 16 37 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.13 1.71 5.44 -2.39 -0.01 1.69 16 40 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 2.37 7.75 -2.38 -0.02 2.35 16 42 H 0.05 1.83 7.88 -2.39 -0.02 1.82 16 43 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.03 1.09 7.98 -2.39 -0.02 1.07 16 45 H 0.36 19.40 6.44 -92.71 -0.60 18.80 16 46 H 0.24 15.72 6.77 -92.71 -0.63 15.09 16 47 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 48 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.11 1.30 6.24 -2.38 -0.01 1.29 16 51 H 0.10 1.38 8.06 -2.39 -0.02 1.36 16 Total: -1.00 -77.16 386.35 -0.84 -78.00 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: 0.46 Total: 31.61 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 6.50 Total: 3.59 kcal Atomic # 7 Polarization: -129.93 SS G_CDS: -8.20 Total: -138.12 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -1.66 Total: -30.01 kcal Atomic # 14 Polarization: 52.88 SS G_CDS: 2.05 Total: 54.93 kcal Total: -77.16 -0.84 -78.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106350713.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.353 kcal (2) G-P(sol) polarization free energy of solvation -77.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds