Wall clock time and date at job start Fri Apr 10 2020 18:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47368 * 2 1 4 4 C 1.34779 * 120.00165 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99927 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00033 * 179.97438 * 4 3 2 7 7 C 1.53006 * 109.46866 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.46623 * 179.97438 * 7 6 4 9 9 C 1.50706 * 109.46953 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99692 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00146 * 180.02562 * 9 8 7 12 12 C 1.47480 * 127.03301 * 180.02562 * 11 9 8 13 13 C 1.54001 * 107.08513 * 154.51135 * 12 11 9 14 14 H 1.09005 * 110.32439 * 120.19237 * 13 12 11 15 15 C 1.53001 * 110.33166 * 242.30954 * 13 12 11 16 16 N 1.46504 * 109.46845 * 293.54718 * 15 13 12 17 17 C 1.36939 * 119.99504 * 179.97438 * 16 15 13 18 18 H 1.07993 * 119.99887 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99439 * 179.97438 * 17 16 15 20 20 N 1.31614 * 120.00532 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99546 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47041 * 90.00182 * 21 19 17 23 23 H 1.48502 * 109.47128 * 209.99862 * 21 19 17 24 24 H 1.48493 * 109.47295 * 330.00211 * 21 19 17 25 25 C 1.54617 * 105.04450 * 1.30788 * 13 12 11 26 26 H 1.09007 * 110.73878 * 263.51045 * 25 13 12 27 27 C 1.52999 * 110.74306 * 140.36452 * 25 13 12 28 28 C 1.48115 * 127.03158 * 359.67767 * 11 9 8 29 29 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47108 * 300.00044 * 1 2 3 31 31 H 1.09000 * 109.46870 * 59.99938 * 1 2 3 32 32 H 1.08996 * 109.47261 * 239.99672 * 2 1 3 33 33 H 1.09004 * 109.47368 * 120.00056 * 2 1 3 34 34 H 0.96996 * 119.99985 * 0.02562 * 3 2 1 35 35 H 1.08993 * 109.47512 * 60.00410 * 6 4 3 36 36 H 1.09000 * 109.47247 * 300.00119 * 6 4 3 37 37 H 1.09000 * 109.47050 * 299.99952 * 7 6 4 38 38 H 1.09001 * 109.46801 * 60.00064 * 7 6 4 39 39 H 1.09000 * 109.47486 * 299.99829 * 8 7 6 40 40 H 1.09001 * 109.47362 * 60.00551 * 8 7 6 41 41 H 1.08999 * 109.91212 * 273.87525 * 12 11 9 42 42 H 1.08997 * 109.91683 * 35.15155 * 12 11 9 43 43 H 1.09000 * 109.46660 * 53.54328 * 15 13 12 44 44 H 1.09000 * 109.47380 * 173.54589 * 15 13 12 45 45 H 0.97000 * 119.99755 * 359.97438 * 16 15 13 46 46 H 0.96998 * 120.00185 * 180.02562 * 20 19 17 47 47 H 1.09004 * 109.47064 * 59.99960 * 27 25 13 48 48 H 1.08996 * 109.47014 * 179.97438 * 27 25 13 49 49 H 1.08993 * 109.47359 * 299.99948 * 27 25 13 50 50 H 1.08994 * 110.66738 * 337.77422 * 28 11 9 51 51 H 1.09004 * 110.65607 * 100.89056 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6275 0.0005 5 8 4.1316 0.7056 0.0005 6 6 3.8458 3.0483 -0.0001 7 6 5.3759 3.0482 0.0001 8 6 5.8858 4.4906 -0.0012 9 6 7.3929 4.4906 -0.0004 10 8 7.9992 3.4403 0.0005 11 7 8.0668 5.6578 -0.0008 12 6 9.5305 5.8383 -0.0007 13 6 9.8170 7.2123 -0.6346 14 1 10.3451 7.8526 0.0720 15 6 10.6370 7.0461 -1.9156 16 7 11.9679 6.5335 -1.5803 17 6 12.8830 6.3036 -2.5728 18 1 12.6237 6.5005 -3.6025 19 6 14.1441 5.8184 -2.2550 20 7 14.4602 5.5789 -1.0001 21 14 15.3922 5.5040 -3.6089 22 1 16.1948 6.7325 -3.8373 23 1 16.2914 4.3933 -3.2051 24 1 14.6827 5.1365 -4.8606 25 6 8.4252 7.8031 -0.9580 26 1 8.1586 7.6157 -1.9983 27 6 8.3886 9.3019 -0.6530 28 6 7.4889 7.0215 -0.0085 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.3881 2.1185 0.0004 35 1 3.4822 3.5626 0.8894 36 1 3.4829 3.5616 -0.8905 37 1 5.7391 2.5347 0.8903 38 1 5.7392 2.5339 -0.8897 39 1 5.5226 5.0037 -0.8916 40 1 5.5225 5.0053 0.8884 41 1 9.9073 5.8154 1.0219 42 1 10.0017 5.0520 -0.5903 43 1 10.1340 6.3439 -2.5804 44 1 10.7340 8.0113 -2.4127 45 1 12.2008 6.3570 -0.6554 46 1 15.3416 5.2402 -0.7781 47 1 9.1373 9.8141 -1.2573 48 1 7.4002 9.6965 -0.8884 49 1 8.6022 9.4630 0.4036 50 1 6.4717 7.0061 -0.3997 51 1 7.5109 7.4542 0.9918 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106893213.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:17 Heat of formation + Delta-G solvation = -82.312750 kcal Electronic energy + Delta-G solvation = -27284.547280 eV Core-core repulsion = 23411.271954 eV Total energy + Delta-G solvation = -3873.275326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.18435 -39.84369 -37.94764 -35.73826 -34.58974 -34.37093 -32.78749 -31.41481 -31.18916 -29.46557 -28.27215 -26.32541 -25.45782 -23.79011 -23.13330 -22.12678 -21.09366 -20.61659 -19.75149 -19.09507 -17.43003 -17.12478 -16.70281 -16.49562 -16.18905 -15.98897 -15.52753 -15.02960 -14.71585 -14.35880 -14.15575 -13.85596 -13.59312 -13.41109 -13.33902 -13.09493 -12.84341 -12.73117 -12.58769 -12.31710 -12.21675 -12.13919 -11.92030 -11.87436 -11.76486 -11.51732 -11.40493 -11.04977 -10.94332 -10.83575 -10.57019 -10.46631 -10.28124 -10.13601 -9.94866 -9.64622 -9.59637 -9.44810 -8.83452 -8.48552 -6.87816 -5.71399 -3.00265 2.38477 2.78230 2.80289 3.13516 3.47762 3.52855 3.54979 4.35097 4.39735 4.55171 4.56865 4.60795 4.64968 4.75150 4.77624 4.85834 4.87183 4.96355 5.14394 5.21044 5.27634 5.30420 5.37369 5.38030 5.43729 5.46154 5.51637 5.54459 5.57991 5.64129 5.74361 5.80858 5.96359 6.02978 6.04469 6.10765 6.19467 6.22475 6.26835 6.34811 6.48497 6.52925 6.75702 6.90842 7.12522 7.72372 7.74619 7.94077 8.34988 8.47111 9.58372 10.15411 10.49967 11.51416 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.015048 B = 0.002056 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.251267 B =13618.446735 C =14978.395276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.112 3.888 3 N -0.738 5.738 4 C 0.509 3.491 5 O -0.531 6.531 6 C -0.139 4.139 7 C -0.091 4.091 8 C -0.134 4.134 9 C 0.525 3.475 10 O -0.533 6.533 11 N -0.622 5.622 12 C 0.110 3.890 13 C -0.102 4.102 14 H 0.085 0.915 15 C 0.163 3.837 16 N -0.732 5.732 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.101 4.101 26 H 0.083 0.917 27 C -0.139 4.139 28 C 0.104 3.896 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.400 0.600 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.019 0.981 44 H 0.021 0.979 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.063 0.937 48 H 0.054 0.946 49 H 0.057 0.943 50 H 0.076 0.924 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.099 1.640 4.693 32.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.391 5.391 4 C 0.295 3.705 5 O -0.407 6.407 6 C -0.179 4.179 7 C -0.129 4.129 8 C -0.174 4.174 9 C 0.314 3.686 10 O -0.409 6.409 11 N -0.357 5.357 12 C -0.012 4.012 13 C -0.122 4.122 14 H 0.104 0.896 15 C 0.035 3.965 16 N -0.376 5.376 17 C -0.372 4.372 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.738 3.262 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.121 4.121 26 H 0.102 0.898 27 C -0.197 4.197 28 C -0.019 4.019 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.234 0.766 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.081 0.919 42 H 0.108 0.892 43 H 0.037 0.963 44 H 0.039 0.961 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.082 0.918 48 H 0.073 0.927 49 H 0.076 0.924 50 H 0.095 0.905 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -31.161 0.236 4.539 31.491 hybrid contribution 0.482 0.229 -0.407 0.671 sum -30.679 0.465 4.132 30.960 Atomic orbital electron populations 1.22003 0.94450 1.03293 1.02461 1.21294 0.94171 0.83208 1.02511 1.46114 1.07325 1.08856 1.76845 1.20818 0.81955 0.92021 0.75667 1.90764 1.55160 1.46572 1.48170 1.21693 0.98267 0.93611 1.04358 1.21096 0.91599 0.94822 1.05431 1.21638 0.92344 0.99374 1.04039 1.20254 0.89696 0.82247 0.76446 1.90768 1.70321 1.30400 1.49416 1.48884 1.08212 1.05348 1.73233 1.22159 0.79405 0.98575 1.01028 1.22383 0.95179 0.95270 0.99362 0.89619 1.20692 0.86614 0.96453 0.92714 1.42360 1.09363 1.78485 1.07429 1.19209 0.92771 1.36281 0.88894 0.91242 1.24736 0.97818 1.02117 0.96235 1.69653 1.21147 1.51380 1.15882 0.86190 0.81482 0.77431 0.81088 1.21766 1.21759 1.20798 1.22224 0.94937 0.95062 0.99856 0.89843 1.21724 1.01718 0.94315 1.01921 1.22543 0.97443 0.82141 0.99767 0.90783 0.91988 0.91973 0.91507 0.91531 0.76645 0.88800 0.88757 0.90294 0.90217 0.89015 0.89108 0.91919 0.89178 0.96339 0.96103 0.78246 0.93516 0.91782 0.92734 0.92437 0.90526 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.54 10.03 37.16 0.37 -0.17 16 2 C 0.11 0.71 6.39 -4.04 -0.03 0.68 16 3 N -0.74 -4.69 5.56 -60.30 -0.33 -5.02 16 4 C 0.51 4.95 7.83 -10.99 -0.09 4.86 16 5 O -0.53 -7.95 15.98 5.56 0.09 -7.86 16 6 C -0.14 -0.95 5.70 -27.88 -0.16 -1.11 16 7 C -0.09 -0.99 3.79 -26.73 -0.10 -1.09 16 8 C -0.13 -1.28 4.63 -27.88 -0.13 -1.41 16 9 C 0.53 7.99 7.89 -10.98 -0.09 7.90 16 10 O -0.53 -10.89 16.32 5.56 0.09 -10.80 16 11 N -0.62 -8.90 3.29 -170.01 -0.56 -9.46 16 12 C 0.11 1.90 6.31 -2.98 -0.02 1.88 16 13 C -0.10 -1.61 2.64 -89.25 -0.24 -1.84 16 14 H 0.09 1.34 7.85 -51.93 -0.41 0.93 16 15 C 0.16 3.29 5.35 -4.04 -0.02 3.27 16 16 N -0.73 -18.87 5.33 -59.91 -0.32 -19.18 16 17 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 18 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -28.91 13.06 55.49 0.72 -28.18 16 21 Si 0.91 23.08 29.55 -169.99 -5.02 18.05 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 24 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 25 C -0.10 -1.16 3.18 -88.95 -0.28 -1.44 16 26 H 0.08 0.99 7.87 -51.92 -0.41 0.58 16 27 C -0.14 -1.30 9.17 37.16 0.34 -0.96 16 28 C 0.10 1.05 6.38 -2.33 -0.01 1.03 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.40 1.22 8.47 -40.82 -0.35 0.88 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.08 1.05 8.06 -51.93 -0.42 0.63 16 38 H 0.08 1.08 8.06 -51.93 -0.42 0.66 16 39 H 0.09 0.67 7.90 -51.93 -0.41 0.26 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.09 1.94 7.48 -51.93 -0.39 1.55 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.38 10.37 7.51 -40.82 -0.31 10.07 16 46 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 50 H 0.08 0.56 7.23 -51.93 -0.38 0.18 16 51 H 0.07 0.64 8.02 -51.93 -0.42 0.22 16 LS Contribution 413.75 15.07 6.24 6.24 Total: -1.00 -38.22 413.75 -9.15 -47.37 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -9.36 Total: 4.79 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -0.70 Total: 4.06 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: -0.49 Total: -61.85 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: 0.18 Total: -18.66 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -38.22 -9.15 -47.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106893213.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.942 kcal (2) G-P(sol) polarization free energy of solvation -38.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds