Wall clock time and date at job start Fri Apr 10 2020 18:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47368 * 2 1 4 4 C 1.34779 * 120.00165 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99927 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00033 * 179.97438 * 4 3 2 7 7 C 1.53006 * 109.46866 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.46623 * 179.97438 * 7 6 4 9 9 C 1.50706 * 109.46953 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99692 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00146 * 180.02562 * 9 8 7 12 12 C 1.47480 * 127.03301 * 180.02562 * 11 9 8 13 13 C 1.54001 * 107.08513 * 154.51135 * 12 11 9 14 14 H 1.09005 * 110.32439 * 120.19237 * 13 12 11 15 15 C 1.53001 * 110.33166 * 242.30954 * 13 12 11 16 16 N 1.46504 * 109.46845 * 293.54718 * 15 13 12 17 17 C 1.36939 * 119.99504 * 179.97438 * 16 15 13 18 18 H 1.07993 * 119.99887 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99439 * 179.97438 * 17 16 15 20 20 N 1.31614 * 120.00532 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99546 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47041 * 90.00182 * 21 19 17 23 23 H 1.48502 * 109.47128 * 209.99862 * 21 19 17 24 24 H 1.48493 * 109.47295 * 330.00211 * 21 19 17 25 25 C 1.54617 * 105.04450 * 1.30788 * 13 12 11 26 26 H 1.09007 * 110.73878 * 263.51045 * 25 13 12 27 27 C 1.52999 * 110.74306 * 140.36452 * 25 13 12 28 28 C 1.48115 * 127.03158 * 359.67767 * 11 9 8 29 29 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47108 * 300.00044 * 1 2 3 31 31 H 1.09000 * 109.46870 * 59.99938 * 1 2 3 32 32 H 1.08996 * 109.47261 * 239.99672 * 2 1 3 33 33 H 1.09004 * 109.47368 * 120.00056 * 2 1 3 34 34 H 0.96996 * 119.99985 * 0.02562 * 3 2 1 35 35 H 1.08993 * 109.47512 * 60.00410 * 6 4 3 36 36 H 1.09000 * 109.47247 * 300.00119 * 6 4 3 37 37 H 1.09000 * 109.47050 * 299.99952 * 7 6 4 38 38 H 1.09001 * 109.46801 * 60.00064 * 7 6 4 39 39 H 1.09000 * 109.47486 * 299.99829 * 8 7 6 40 40 H 1.09001 * 109.47362 * 60.00551 * 8 7 6 41 41 H 1.08999 * 109.91212 * 273.87525 * 12 11 9 42 42 H 1.08997 * 109.91683 * 35.15155 * 12 11 9 43 43 H 1.09000 * 109.46660 * 53.54328 * 15 13 12 44 44 H 1.09000 * 109.47380 * 173.54589 * 15 13 12 45 45 H 0.97000 * 119.99755 * 359.97438 * 16 15 13 46 46 H 0.96998 * 120.00185 * 180.02562 * 20 19 17 47 47 H 1.09004 * 109.47064 * 59.99960 * 27 25 13 48 48 H 1.08996 * 109.47014 * 179.97438 * 27 25 13 49 49 H 1.08993 * 109.47359 * 299.99948 * 27 25 13 50 50 H 1.08994 * 110.66738 * 337.77422 * 28 11 9 51 51 H 1.09004 * 110.65607 * 100.89056 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6275 0.0005 5 8 4.1316 0.7056 0.0005 6 6 3.8458 3.0483 -0.0001 7 6 5.3759 3.0482 0.0001 8 6 5.8858 4.4906 -0.0012 9 6 7.3929 4.4906 -0.0004 10 8 7.9992 3.4403 0.0005 11 7 8.0668 5.6578 -0.0008 12 6 9.5305 5.8383 -0.0007 13 6 9.8170 7.2123 -0.6346 14 1 10.3451 7.8526 0.0720 15 6 10.6370 7.0461 -1.9156 16 7 11.9679 6.5335 -1.5803 17 6 12.8830 6.3036 -2.5728 18 1 12.6237 6.5005 -3.6025 19 6 14.1441 5.8184 -2.2550 20 7 14.4602 5.5789 -1.0001 21 14 15.3922 5.5040 -3.6089 22 1 16.1948 6.7325 -3.8373 23 1 16.2914 4.3933 -3.2051 24 1 14.6827 5.1365 -4.8606 25 6 8.4252 7.8031 -0.9580 26 1 8.1586 7.6157 -1.9983 27 6 8.3886 9.3019 -0.6530 28 6 7.4889 7.0215 -0.0085 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.3881 2.1185 0.0004 35 1 3.4822 3.5626 0.8894 36 1 3.4829 3.5616 -0.8905 37 1 5.7391 2.5347 0.8903 38 1 5.7392 2.5339 -0.8897 39 1 5.5226 5.0037 -0.8916 40 1 5.5225 5.0053 0.8884 41 1 9.9073 5.8154 1.0219 42 1 10.0017 5.0520 -0.5903 43 1 10.1340 6.3439 -2.5804 44 1 10.7340 8.0113 -2.4127 45 1 12.2008 6.3570 -0.6554 46 1 15.3416 5.2402 -0.7781 47 1 9.1373 9.8141 -1.2573 48 1 7.4002 9.6965 -0.8884 49 1 8.6022 9.4630 0.4036 50 1 6.4717 7.0061 -0.3997 51 1 7.5109 7.4542 0.9918 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106893213.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:16 Heat of formation + Delta-G solvation = -111.534068 kcal Electronic energy + Delta-G solvation = -27285.814412 eV Core-core repulsion = 23411.271954 eV Total energy + Delta-G solvation = -3874.542458 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.24837 -40.69916 -39.18237 -36.45877 -36.37197 -35.24690 -34.14087 -33.06881 -31.80466 -30.81681 -29.27230 -27.16148 -27.03778 -25.19372 -24.20600 -22.97319 -22.33626 -21.31793 -20.94735 -20.20425 -19.20214 -18.16255 -17.79185 -17.37159 -17.00580 -16.84740 -16.68728 -16.41370 -15.96175 -15.52902 -15.31231 -15.18279 -14.99054 -14.64149 -14.46720 -14.01226 -13.96041 -13.67123 -13.48367 -13.25698 -13.11207 -12.92982 -12.84448 -12.81434 -12.74660 -12.68998 -12.49315 -12.38170 -12.35513 -12.17550 -11.96718 -11.82190 -11.72627 -11.46076 -11.35292 -11.02277 -10.97269 -10.78666 -10.09433 -9.69875 -9.03717 -7.98516 -5.27684 1.42977 1.46066 1.54185 1.65473 1.67572 1.95545 2.32256 2.52760 3.34535 3.44892 3.58260 3.73161 3.79067 3.85708 4.05915 4.07147 4.14377 4.20162 4.20868 4.27673 4.48723 4.51203 4.53161 4.57928 4.61551 4.62695 4.67608 4.72125 4.77176 4.80667 4.93172 4.96937 4.98477 5.04784 5.04997 5.14831 5.17677 5.24582 5.26436 5.29531 5.38915 5.41915 5.45230 5.52026 5.61045 6.23559 6.60527 6.62847 7.20098 7.29566 7.32501 8.05587 8.28222 9.25048 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.015048 B = 0.002056 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.251267 B =13618.446735 C =14978.395276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.106 3.894 3 N -0.719 5.719 4 C 0.499 3.501 5 O -0.599 6.599 6 C -0.125 4.125 7 C -0.090 4.090 8 C -0.116 4.116 9 C 0.510 3.490 10 O -0.604 6.604 11 N -0.621 5.621 12 C 0.113 3.887 13 C -0.093 4.093 14 H 0.087 0.913 15 C 0.163 3.837 16 N -0.746 5.746 17 C -0.249 4.249 18 H 0.075 0.925 19 C -0.077 4.077 20 N -0.969 5.969 21 Si 0.975 3.025 22 H -0.280 1.280 23 H -0.296 1.296 24 H -0.272 1.272 25 C -0.092 4.092 26 H 0.082 0.918 27 C -0.134 4.134 28 C 0.105 3.895 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.420 0.580 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.041 0.959 38 H 0.038 0.962 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.055 0.945 42 H 0.033 0.967 43 H 0.005 0.995 44 H 0.031 0.969 45 H 0.373 0.627 46 H 0.251 0.749 47 H 0.049 0.951 48 H 0.086 0.914 49 H 0.064 0.936 50 H 0.123 0.877 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.247 4.915 4.341 36.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.018 4.018 3 N -0.373 5.373 4 C 0.287 3.713 5 O -0.480 6.480 6 C -0.164 4.164 7 C -0.129 4.129 8 C -0.155 4.155 9 C 0.302 3.698 10 O -0.486 6.486 11 N -0.354 5.354 12 C -0.011 4.011 13 C -0.112 4.112 14 H 0.106 0.894 15 C 0.037 3.963 16 N -0.388 5.388 17 C -0.381 4.381 18 H 0.093 0.907 19 C -0.269 4.269 20 N -0.620 5.620 21 Si 0.804 3.196 22 H -0.207 1.207 23 H -0.223 1.223 24 H -0.197 1.197 25 C -0.112 4.112 26 H 0.101 0.899 27 C -0.191 4.191 28 C -0.015 4.015 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.258 0.742 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.022 0.978 44 H 0.049 0.951 45 H 0.205 0.795 46 H 0.060 0.940 47 H 0.069 0.931 48 H 0.104 0.896 49 H 0.083 0.917 50 H 0.141 0.859 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -35.422 3.609 4.162 35.848 hybrid contribution 1.731 -0.814 -0.308 1.937 sum -33.691 2.795 3.855 34.026 Atomic orbital electron populations 1.21937 0.91528 1.04063 1.03555 1.21337 0.96458 0.83078 1.00880 1.45999 1.06723 1.09608 1.74948 1.21501 0.82445 0.92790 0.74579 1.90747 1.56991 1.48727 1.51501 1.21674 0.94692 0.92040 1.07980 1.20979 0.94836 0.95274 1.01774 1.21689 0.87163 0.98874 1.07800 1.21524 0.92213 0.81274 0.74791 1.90741 1.72169 1.33088 1.52571 1.49036 1.06783 1.07317 1.72313 1.21873 0.81866 0.97725 0.99626 1.22271 0.97461 0.94647 0.96851 0.89426 1.20836 0.84665 0.95759 0.95052 1.42591 1.11096 1.78696 1.06424 1.19643 0.93466 1.35242 0.89743 0.90748 1.25611 0.99989 1.02726 0.98559 1.69819 1.21373 1.52843 1.17931 0.85115 0.78797 0.77190 0.78506 1.20705 1.22300 1.19686 1.22240 0.91749 0.96796 1.00413 0.89930 1.21699 1.03206 0.92010 1.02187 1.22901 0.98911 0.78789 1.00935 0.90277 0.90769 0.90851 0.93337 0.93232 0.74224 0.84784 0.85009 0.93989 0.94343 0.85104 0.84731 0.92663 0.94785 0.97751 0.95080 0.79518 0.93997 0.93149 0.89551 0.91691 0.85870 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 10.03 71.98 0.72 0.02 16 2 C 0.11 1.32 6.39 86.38 0.55 1.88 16 3 N -0.72 -7.89 5.56 -463.06 -2.57 -10.46 16 4 C 0.50 9.37 7.83 87.66 0.69 10.05 16 5 O -0.60 -19.20 15.98 -3.04 -0.05 -19.25 16 6 C -0.12 -1.30 5.70 29.85 0.17 -1.13 16 7 C -0.09 -1.92 3.79 30.60 0.12 -1.80 16 8 C -0.12 -1.82 4.63 29.85 0.14 -1.68 16 9 C 0.51 15.48 7.89 87.66 0.69 16.18 16 10 O -0.60 -26.69 16.32 -3.03 -0.05 -26.74 16 11 N -0.62 -17.15 3.29 -810.17 -2.67 -19.82 16 12 C 0.11 4.07 6.31 86.53 0.55 4.62 16 13 C -0.09 -2.90 2.64 -9.90 -0.03 -2.93 16 14 H 0.09 2.72 7.85 -2.38 -0.02 2.70 16 15 C 0.16 6.75 5.35 86.38 0.46 7.21 16 16 N -0.75 -40.00 5.33 -343.44 -1.83 -41.83 16 17 C -0.25 -14.70 9.99 84.03 0.84 -13.86 16 18 H 0.07 4.21 7.83 -2.91 -0.02 4.19 16 19 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 20 N -0.97 -62.23 13.06 21.65 0.28 -61.95 16 21 Si 0.98 48.42 29.55 68.60 2.03 50.44 16 22 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 24 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 25 C -0.09 -1.83 3.18 -9.71 -0.03 -1.86 16 26 H 0.08 1.69 7.87 -2.38 -0.02 1.67 16 27 C -0.13 -1.93 9.17 71.98 0.66 -1.27 16 28 C 0.11 1.63 6.38 86.60 0.55 2.19 16 29 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.07 0.19 8.14 -2.38 -0.02 0.17 16 31 H 0.07 0.20 8.14 -2.39 -0.02 0.19 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.42 1.07 8.47 -92.71 -0.79 0.29 16 35 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.04 1.18 8.06 -2.39 -0.02 1.16 16 38 H 0.04 1.11 8.06 -2.39 -0.02 1.10 16 39 H 0.13 1.12 7.90 -2.39 -0.02 1.11 16 40 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.03 1.59 7.48 -2.39 -0.02 1.57 16 43 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.37 21.29 7.51 -92.71 -0.70 20.59 16 46 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 47 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 48 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.06 0.87 8.11 -2.39 -0.02 0.85 16 50 H 0.12 0.87 7.23 -2.39 -0.02 0.86 16 51 H 0.10 1.15 8.02 -2.38 -0.02 1.13 16 Total: -1.00 -95.17 413.75 1.11 -94.05 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -0.58 Total: 22.10 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 6.55 Total: 13.45 kcal Atomic # 7 Polarization: -127.26 SS G_CDS: -6.79 Total: -134.05 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -0.10 Total: -45.99 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.03 Total: 50.44 kcal Total: -95.17 1.11 -94.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106893213.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.480 kcal (2) G-P(sol) polarization free energy of solvation -95.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds