Wall clock time and date at job start Fri Apr 10 2020 18:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46594 * 2 1 4 4 C 1.50695 * 109.47114 * 240.00027 * 2 1 3 5 5 O 1.21286 * 119.99603 * 245.98540 * 4 2 1 6 6 N 1.34778 * 120.00394 * 65.98141 * 4 2 1 7 7 C 1.47073 * 120.87911 * 3.97805 * 6 4 2 8 8 C 1.53693 * 108.27681 * 128.75276 * 7 6 4 9 9 N 1.46894 * 109.25872 * 54.08115 * 8 7 6 10 10 C 1.46894 * 111.00306 * 172.60468 * 9 8 7 11 11 C 1.50700 * 109.47380 * 294.30464 * 10 9 8 12 12 O 1.21286 * 119.99850 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99984 * 179.97438 * 11 10 9 14 14 C 1.37097 * 119.99765 * 179.97438 * 13 11 10 15 15 H 1.07995 * 120.00126 * 0.02562 * 14 13 11 16 16 C 1.38953 * 119.99659 * 180.02562 * 14 13 11 17 17 N 1.31410 * 120.00425 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99968 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47319 * 59.99591 * 18 16 14 20 20 H 1.48498 * 109.47360 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46981 * 300.00206 * 18 16 14 22 22 C 1.46896 * 111.27073 * 296.75845 * 9 8 7 23 23 C 1.47079 * 120.88115 * 184.25235 * 6 4 2 24 24 C 1.52994 * 109.47009 * 119.99536 * 2 1 3 25 25 C 1.52996 * 109.47282 * 180.02562 * 24 2 1 26 26 C 1.52998 * 109.47152 * 60.00197 * 24 2 1 27 27 C 1.53002 * 109.47304 * 300.00136 * 24 2 1 28 28 H 1.08996 * 109.47345 * 294.74825 * 1 2 3 29 29 H 1.09005 * 109.47422 * 54.75296 * 1 2 3 30 30 H 1.08999 * 109.47359 * 174.75125 * 1 2 3 31 31 H 1.09002 * 109.63208 * 248.52426 * 7 6 4 32 32 H 1.09005 * 109.63234 * 9.10044 * 7 6 4 33 33 H 1.08999 * 109.65071 * 294.07421 * 8 7 6 34 34 H 1.09001 * 109.42394 * 173.94725 * 8 7 6 35 35 H 1.09008 * 109.46942 * 54.30518 * 10 9 8 36 36 H 1.09001 * 109.47057 * 174.30133 * 10 9 8 37 37 H 0.97001 * 119.99858 * 0.02562 * 13 11 10 38 38 H 0.96997 * 120.00671 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.49073 * 303.14591 * 22 9 8 40 40 H 1.08993 * 109.51930 * 183.07410 * 22 9 8 41 41 H 1.09004 * 109.62739 * 350.90134 * 23 6 4 42 42 H 1.09001 * 109.62587 * 111.48000 * 23 6 4 43 43 H 1.08995 * 109.47312 * 60.00073 * 25 24 2 44 44 H 1.09003 * 109.47287 * 300.00058 * 25 24 2 45 45 H 1.09002 * 109.47970 * 180.02562 * 25 24 2 46 46 H 1.09007 * 109.47612 * 179.97438 * 26 24 2 47 47 H 1.09002 * 109.47096 * 299.99724 * 26 24 2 48 48 H 1.09007 * 109.47441 * 60.00059 * 26 24 2 49 49 H 1.08995 * 109.47027 * 299.99765 * 27 24 2 50 50 H 1.09002 * 109.47220 * 60.00106 * 27 24 2 51 51 H 1.09007 * 109.46803 * 179.97438 * 27 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.6375 -1.7559 -1.1224 6 7 1.8091 -0.1840 -2.4509 7 6 1.1543 1.1244 -2.6004 8 6 2.0223 1.9952 -3.5226 9 7 2.2659 1.2760 -4.7800 10 6 2.9424 2.1388 -5.7576 11 6 2.0239 3.2663 -6.1530 12 8 0.9147 3.3431 -5.6684 13 7 2.4350 4.1891 -7.0450 14 6 1.5992 5.2145 -7.4051 15 1 0.6116 5.2829 -6.9736 16 6 2.0230 6.1656 -8.3252 17 7 3.2246 6.0821 -8.8506 18 14 0.8845 7.5632 -8.8153 19 1 0.5320 8.3596 -7.6124 20 1 1.5686 8.4358 -9.8031 21 1 -0.3522 7.0055 -9.4194 22 6 3.0296 0.0426 -4.5491 23 6 2.2084 -0.9055 -3.6688 24 6 2.0400 -0.7211 1.2493 25 6 3.5699 -0.7206 1.2496 26 6 1.5300 -2.1636 1.2494 27 6 1.5299 0.0002 2.4985 28 1 -0.3634 0.4302 0.9332 29 1 -0.3634 0.5931 -0.8393 30 1 -0.3634 -1.0233 -0.0940 31 1 0.1662 0.9913 -3.0408 32 1 1.0620 1.6014 -1.6245 33 1 2.9738 2.2093 -3.0358 34 1 1.5028 2.9300 -3.7330 35 1 3.8501 2.5482 -5.3141 36 1 3.2011 1.5543 -6.6405 37 1 3.3220 4.1274 -7.4328 38 1 3.5202 6.7458 -9.4931 39 1 3.9670 0.2837 -4.0480 40 1 3.2408 -0.4390 -5.5037 41 1 2.8133 -1.7715 -3.3996 42 1 1.3196 -1.2301 -4.2100 43 1 3.9329 0.3071 1.2498 44 1 3.9337 -1.2342 0.3597 45 1 3.9334 -1.2348 2.1394 46 1 1.8937 -2.6776 2.1392 47 1 0.4400 -2.1636 1.2494 48 1 1.8934 -2.6776 0.3594 49 1 1.8933 1.0278 2.4984 50 1 0.4399 0.0002 2.4985 51 1 1.8929 -0.5139 3.3885 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113013731.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:27 Heat of formation + Delta-G solvation = -64.980475 kcal Electronic energy + Delta-G solvation = -29096.835394 eV Core-core repulsion = 25224.311652 eV Total energy + Delta-G solvation = -3872.523742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.84480 -38.98817 -37.72418 -36.62064 -34.64487 -33.83409 -31.81691 -31.29618 -30.56726 -28.76032 -27.55239 -27.33707 -25.87069 -24.56518 -23.73345 -23.59399 -21.32179 -19.55739 -19.25023 -18.32752 -17.90532 -17.23313 -16.21223 -15.88839 -15.51982 -15.15068 -14.97799 -14.84467 -14.58343 -14.36601 -14.26291 -14.06102 -13.89026 -13.64326 -13.55615 -13.14024 -12.72896 -12.48273 -12.28993 -12.17018 -12.00862 -11.88608 -11.71821 -11.62967 -11.54847 -11.37372 -11.24293 -11.17985 -11.12647 -10.99278 -10.82537 -10.68030 -10.61110 -10.46953 -10.24795 -9.50787 -9.37141 -8.82540 -8.38394 -8.02000 -7.91788 -6.45004 -3.86101 2.57311 2.92189 3.17235 3.23618 3.27465 3.85005 3.92232 4.19923 4.31383 4.42554 4.60896 4.82794 4.91779 4.99391 5.06605 5.09211 5.15331 5.20374 5.22862 5.23750 5.33645 5.41825 5.46447 5.50326 5.54176 5.58709 5.62930 5.70862 5.72648 5.77045 5.80148 5.82801 5.85463 5.88051 5.98447 6.00626 6.09785 6.12805 6.19889 6.22556 6.34511 6.39803 6.56000 7.12798 7.28698 7.42654 7.51627 8.02273 8.15726 8.57581 9.14179 9.50439 10.01610 10.72545 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.024823 B = 0.002421 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.719797 B =11564.708126 C =12076.979046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.102 4.102 3 H 0.093 0.907 4 C 0.522 3.478 5 O -0.539 6.539 6 N -0.611 5.611 7 C 0.113 3.887 8 C 0.038 3.962 9 N -0.514 5.514 10 C 0.046 3.954 11 C 0.443 3.557 12 O -0.579 6.579 13 N -0.563 5.563 14 C -0.300 4.300 15 H 0.103 0.897 16 C 0.023 3.977 17 N -0.901 5.901 18 Si 0.931 3.069 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.041 3.959 23 C 0.118 3.882 24 C -0.046 4.046 25 C -0.151 4.151 26 C -0.157 4.157 27 C -0.144 4.144 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.027 0.973 34 H 0.115 0.885 35 H 0.047 0.953 36 H 0.090 0.910 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.034 0.966 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.045 0.955 44 H 0.077 0.923 45 H 0.051 0.949 46 H 0.046 0.954 47 H 0.047 0.953 48 H 0.089 0.911 49 H 0.054 0.946 50 H 0.058 0.942 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.161 -12.512 16.985 21.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.123 4.123 3 H 0.111 0.889 4 C 0.311 3.689 5 O -0.418 6.418 6 N -0.344 5.344 7 C -0.010 4.010 8 C -0.090 4.090 9 N -0.239 5.239 10 C -0.085 4.085 11 C 0.229 3.771 12 O -0.463 6.463 13 N -0.199 5.199 14 C -0.429 4.429 15 H 0.121 0.879 16 C -0.179 4.179 17 N -0.543 5.543 18 Si 0.758 3.242 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.088 4.088 23 C -0.005 4.005 24 C -0.046 4.046 25 C -0.208 4.208 26 C -0.214 4.214 27 C -0.202 4.202 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.045 0.955 34 H 0.133 0.867 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.052 0.948 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.096 0.904 45 H 0.070 0.930 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.108 0.892 49 H 0.073 0.927 50 H 0.077 0.923 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.942 -13.007 17.019 21.441 hybrid contribution 0.894 1.123 -0.365 1.481 sum -0.047 -11.884 16.654 20.460 Atomic orbital electron populations 1.22003 0.92849 1.03030 1.03137 1.21356 0.97643 1.00426 0.92890 0.88902 1.20621 0.78765 0.85249 0.84264 1.90531 1.41506 1.23966 1.85799 1.48281 1.59668 1.20732 1.05696 1.22100 0.96992 0.82103 0.99775 1.22741 0.98483 0.98985 0.88817 1.61496 1.47048 1.05198 1.10145 1.21854 0.95298 0.95018 0.96325 1.19703 0.88691 0.84607 0.84139 1.90469 1.21691 1.76874 1.57305 1.41873 1.16884 1.23321 1.37835 1.19641 0.98787 1.02157 1.22351 0.87924 1.25268 0.96702 0.99214 0.96719 1.69598 1.17742 1.36817 1.30098 0.85921 0.79680 0.80261 0.78376 1.19912 1.20984 1.19860 1.22498 0.94699 0.91831 0.99776 1.21679 0.99664 0.94824 0.84286 1.20268 0.95938 0.95787 0.92636 1.22041 0.94331 1.01280 1.03122 1.22218 1.00151 0.95433 1.03562 1.21975 1.01134 1.00097 0.96953 0.91056 0.91511 0.91859 0.90017 0.89511 0.95523 0.86668 0.93487 0.89198 0.77480 0.91779 0.94780 0.89603 0.88886 0.90723 0.93539 0.90411 0.93032 0.93494 0.93368 0.89228 0.92725 0.92287 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.12 37.16 0.30 -0.98 16 2 C -0.10 -0.99 1.25 -91.78 -0.12 -1.10 16 3 H 0.09 0.85 7.17 -51.93 -0.37 0.48 16 4 C 0.52 6.39 6.40 -10.99 -0.07 6.32 16 5 O -0.54 -7.74 10.85 5.55 0.06 -7.68 16 6 N -0.61 -7.50 3.00 -172.18 -0.52 -8.01 16 7 C 0.11 1.38 5.16 -3.37 -0.02 1.36 16 8 C 0.04 0.57 5.27 -3.47 -0.02 0.55 16 9 N -0.51 -8.10 4.37 -235.48 -1.03 -9.13 16 10 C 0.05 0.79 5.45 -4.98 -0.03 0.76 16 11 C 0.44 9.98 7.44 -10.98 -0.08 9.90 16 12 O -0.58 -14.69 13.91 5.55 0.08 -14.61 16 13 N -0.56 -13.82 5.29 -10.96 -0.06 -13.88 16 14 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16 15 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 16 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 17 N -0.90 -24.12 13.05 55.50 0.72 -23.39 16 18 Si 0.93 20.64 29.55 -169.99 -5.02 15.62 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 C 0.04 0.52 5.62 -3.70 -0.02 0.50 16 23 C 0.12 1.44 6.61 -3.60 -0.02 1.42 16 24 C -0.05 -0.43 0.54 -154.51 -0.08 -0.52 16 25 C -0.15 -1.54 8.18 37.16 0.30 -1.23 16 26 C -0.16 -1.57 7.83 37.16 0.29 -1.28 16 27 C -0.14 -1.11 8.13 37.16 0.30 -0.80 16 28 H 0.07 0.50 6.16 -51.93 -0.32 0.18 16 29 H 0.07 0.56 5.90 -51.93 -0.31 0.25 16 30 H 0.06 0.56 6.72 -51.93 -0.35 0.21 16 31 H 0.08 1.05 8.13 -51.93 -0.42 0.63 16 32 H 0.09 0.87 5.05 -51.93 -0.26 0.61 16 33 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.12 2.08 5.77 -51.93 -0.30 1.78 16 35 H 0.05 0.75 8.13 -51.92 -0.42 0.33 16 36 H 0.09 1.39 7.97 -51.93 -0.41 0.98 16 37 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 38 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 39 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.98 7.99 -51.93 -0.41 0.56 16 41 H 0.09 1.13 7.04 -51.93 -0.37 0.76 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.97 5.74 -51.93 -0.30 0.67 16 45 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 47 H 0.05 0.44 6.55 -51.93 -0.34 0.10 16 48 H 0.09 1.11 5.30 -51.92 -0.28 0.83 16 49 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.06 0.41 6.32 -51.93 -0.33 0.08 16 51 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 LS Contribution 380.95 15.07 5.74 5.74 Total: -1.00 -30.30 380.95 -7.93 -38.23 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -8.40 Total: 10.00 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 0.50 Total: 7.13 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.88 Total: -54.42 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: 0.14 Total: -22.30 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.30 -7.93 -38.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113013731.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.753 kcal (2) G-P(sol) polarization free energy of solvation -30.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds