Wall clock time and date at job start Fri Apr 10 2020 18:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46594 * 2 1 4 4 C 1.50695 * 109.47114 * 240.00027 * 2 1 3 5 5 O 1.21286 * 119.99603 * 245.98540 * 4 2 1 6 6 N 1.34778 * 120.00394 * 65.98141 * 4 2 1 7 7 C 1.47073 * 120.87911 * 3.97805 * 6 4 2 8 8 C 1.53693 * 108.27681 * 128.75276 * 7 6 4 9 9 N 1.46894 * 109.25872 * 54.08115 * 8 7 6 10 10 C 1.46894 * 111.00306 * 172.60468 * 9 8 7 11 11 C 1.50700 * 109.47380 * 294.30464 * 10 9 8 12 12 O 1.21286 * 119.99850 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99984 * 179.97438 * 11 10 9 14 14 C 1.37097 * 119.99765 * 179.97438 * 13 11 10 15 15 H 1.07995 * 120.00126 * 0.02562 * 14 13 11 16 16 C 1.38953 * 119.99659 * 180.02562 * 14 13 11 17 17 N 1.31410 * 120.00425 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99968 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47319 * 59.99591 * 18 16 14 20 20 H 1.48498 * 109.47360 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46981 * 300.00206 * 18 16 14 22 22 C 1.46896 * 111.27073 * 296.75845 * 9 8 7 23 23 C 1.47079 * 120.88115 * 184.25235 * 6 4 2 24 24 C 1.52994 * 109.47009 * 119.99536 * 2 1 3 25 25 C 1.52996 * 109.47282 * 180.02562 * 24 2 1 26 26 C 1.52998 * 109.47152 * 60.00197 * 24 2 1 27 27 C 1.53002 * 109.47304 * 300.00136 * 24 2 1 28 28 H 1.08996 * 109.47345 * 294.74825 * 1 2 3 29 29 H 1.09005 * 109.47422 * 54.75296 * 1 2 3 30 30 H 1.08999 * 109.47359 * 174.75125 * 1 2 3 31 31 H 1.09002 * 109.63208 * 248.52426 * 7 6 4 32 32 H 1.09005 * 109.63234 * 9.10044 * 7 6 4 33 33 H 1.08999 * 109.65071 * 294.07421 * 8 7 6 34 34 H 1.09001 * 109.42394 * 173.94725 * 8 7 6 35 35 H 1.09008 * 109.46942 * 54.30518 * 10 9 8 36 36 H 1.09001 * 109.47057 * 174.30133 * 10 9 8 37 37 H 0.97001 * 119.99858 * 0.02562 * 13 11 10 38 38 H 0.96997 * 120.00671 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.49073 * 303.14591 * 22 9 8 40 40 H 1.08993 * 109.51930 * 183.07410 * 22 9 8 41 41 H 1.09004 * 109.62739 * 350.90134 * 23 6 4 42 42 H 1.09001 * 109.62587 * 111.48000 * 23 6 4 43 43 H 1.08995 * 109.47312 * 60.00073 * 25 24 2 44 44 H 1.09003 * 109.47287 * 300.00058 * 25 24 2 45 45 H 1.09002 * 109.47970 * 180.02562 * 25 24 2 46 46 H 1.09007 * 109.47612 * 179.97438 * 26 24 2 47 47 H 1.09002 * 109.47096 * 299.99724 * 26 24 2 48 48 H 1.09007 * 109.47441 * 60.00059 * 26 24 2 49 49 H 1.08995 * 109.47027 * 299.99765 * 27 24 2 50 50 H 1.09002 * 109.47220 * 60.00106 * 27 24 2 51 51 H 1.09007 * 109.46803 * 179.97438 * 27 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.6375 -1.7559 -1.1224 6 7 1.8091 -0.1840 -2.4509 7 6 1.1543 1.1244 -2.6004 8 6 2.0223 1.9952 -3.5226 9 7 2.2659 1.2760 -4.7800 10 6 2.9424 2.1388 -5.7576 11 6 2.0239 3.2663 -6.1530 12 8 0.9147 3.3431 -5.6684 13 7 2.4350 4.1891 -7.0450 14 6 1.5992 5.2145 -7.4051 15 1 0.6116 5.2829 -6.9736 16 6 2.0230 6.1656 -8.3252 17 7 3.2246 6.0821 -8.8506 18 14 0.8845 7.5632 -8.8153 19 1 0.5320 8.3596 -7.6124 20 1 1.5686 8.4358 -9.8031 21 1 -0.3522 7.0055 -9.4194 22 6 3.0296 0.0426 -4.5491 23 6 2.2084 -0.9055 -3.6688 24 6 2.0400 -0.7211 1.2493 25 6 3.5699 -0.7206 1.2496 26 6 1.5300 -2.1636 1.2494 27 6 1.5299 0.0002 2.4985 28 1 -0.3634 0.4302 0.9332 29 1 -0.3634 0.5931 -0.8393 30 1 -0.3634 -1.0233 -0.0940 31 1 0.1662 0.9913 -3.0408 32 1 1.0620 1.6014 -1.6245 33 1 2.9738 2.2093 -3.0358 34 1 1.5028 2.9300 -3.7330 35 1 3.8501 2.5482 -5.3141 36 1 3.2011 1.5543 -6.6405 37 1 3.3220 4.1274 -7.4328 38 1 3.5202 6.7458 -9.4931 39 1 3.9670 0.2837 -4.0480 40 1 3.2408 -0.4390 -5.5037 41 1 2.8133 -1.7715 -3.3996 42 1 1.3196 -1.2301 -4.2100 43 1 3.9329 0.3071 1.2498 44 1 3.9337 -1.2342 0.3597 45 1 3.9334 -1.2348 2.1394 46 1 1.8937 -2.6776 2.1392 47 1 0.4400 -2.1636 1.2494 48 1 1.8934 -2.6776 0.3594 49 1 1.8933 1.0278 2.4984 50 1 0.4399 0.0002 2.4985 51 1 1.8929 -0.5139 3.3885 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113013731.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:26 Heat of formation + Delta-G solvation = -84.915061 kcal Electronic energy + Delta-G solvation = -29097.699823 eV Core-core repulsion = 25224.311652 eV Total energy + Delta-G solvation = -3873.388171 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.78875 -40.44383 -39.05912 -37.59826 -36.06926 -35.49273 -33.25583 -32.73900 -31.52337 -30.03241 -28.31820 -28.06454 -27.35492 -25.82936 -24.88711 -24.69484 -22.35481 -21.06144 -20.45214 -19.86097 -19.18508 -18.20136 -17.76884 -16.97488 -16.61101 -16.44950 -16.36865 -16.13377 -15.76882 -15.45826 -15.40803 -15.29918 -15.08323 -14.99976 -14.52386 -14.24502 -13.98486 -13.52458 -13.34854 -13.26035 -13.11468 -12.97770 -12.83267 -12.74497 -12.69157 -12.48502 -12.41526 -12.35272 -12.17722 -12.14291 -12.07895 -12.07276 -11.84085 -11.42187 -11.41272 -11.34775 -10.34713 -10.27723 -9.98577 -9.69947 -9.21491 -8.44364 -5.92710 1.41106 1.43241 1.53713 1.63015 1.96117 2.07633 2.29606 2.72849 3.22708 3.37247 3.45744 3.66959 3.87674 3.89497 3.99172 4.12774 4.19240 4.21608 4.27155 4.35057 4.43918 4.46950 4.47959 4.50908 4.55262 4.62132 4.73127 4.82418 4.83061 4.85499 4.87338 4.92123 4.94079 5.03112 5.04832 5.10730 5.13475 5.25679 5.27510 5.37730 5.43054 5.49571 5.58988 5.67910 5.82493 6.04993 6.13814 6.45168 6.62544 7.15072 7.20550 7.59011 8.13932 8.72824 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.024823 B = 0.002421 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.719797 B =11564.708126 C =12076.979046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 H 0.103 0.897 4 C 0.518 3.482 5 O -0.562 6.562 6 N -0.612 5.612 7 C 0.123 3.877 8 C 0.040 3.960 9 N -0.529 5.529 10 C 0.058 3.942 11 C 0.444 3.556 12 O -0.609 6.609 13 N -0.575 5.575 14 C -0.329 4.329 15 H 0.082 0.918 16 C -0.014 4.014 17 N -0.922 5.922 18 Si 0.991 3.009 19 H -0.271 1.271 20 H -0.273 1.273 21 H -0.272 1.272 22 C 0.047 3.953 23 C 0.119 3.881 24 C -0.046 4.046 25 C -0.148 4.148 26 C -0.153 4.153 27 C -0.140 4.140 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.032 0.968 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.111 0.889 37 H 0.395 0.605 38 H 0.277 0.723 39 H 0.036 0.964 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.057 0.943 46 H 0.051 0.949 47 H 0.055 0.945 48 H 0.064 0.936 49 H 0.060 0.940 50 H 0.068 0.932 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.329 -12.473 18.060 21.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.121 4.121 3 H 0.121 0.879 4 C 0.309 3.691 5 O -0.442 6.442 6 N -0.345 5.345 7 C 0.001 3.999 8 C -0.088 4.088 9 N -0.255 5.255 10 C -0.073 4.073 11 C 0.231 3.769 12 O -0.495 6.495 13 N -0.213 5.213 14 C -0.459 4.459 15 H 0.100 0.900 16 C -0.214 4.214 17 N -0.564 5.564 18 Si 0.815 3.185 19 H -0.196 1.196 20 H -0.198 1.198 21 H -0.197 1.197 22 C -0.081 4.081 23 C -0.003 4.003 24 C -0.047 4.047 25 C -0.205 4.205 26 C -0.210 4.210 27 C -0.198 4.198 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.129 0.871 33 H 0.050 0.950 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.129 0.871 37 H 0.229 0.771 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.121 0.879 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.079 0.921 50 H 0.087 0.913 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.097 -12.987 18.102 22.305 hybrid contribution 0.962 1.018 -0.654 1.546 sum -0.135 -11.969 17.447 21.158 Atomic orbital electron populations 1.21999 0.91653 1.02832 1.04183 1.21419 0.98530 1.00509 0.91656 0.87920 1.21118 0.78206 0.85043 0.84781 1.90541 1.42447 1.25061 1.86113 1.48336 1.59656 1.20632 1.05907 1.22010 0.95811 0.81821 1.00293 1.22639 0.98775 0.98251 0.89159 1.61482 1.47840 1.05851 1.10280 1.21726 0.94249 0.93582 0.97775 1.20654 0.88897 0.84875 0.82450 1.90451 1.23464 1.77673 1.57933 1.41948 1.16842 1.23675 1.38815 1.19621 0.98710 1.03941 1.23615 0.90042 1.26025 0.98121 1.01026 0.96219 1.69666 1.18761 1.37591 1.30333 0.85010 0.77866 0.77442 0.78171 1.19590 1.19796 1.19723 1.22527 0.94335 0.90438 1.00847 1.21658 0.99636 0.94736 0.84314 1.20294 0.95321 0.95601 0.93442 1.21998 0.95094 1.01278 1.02162 1.22147 1.00584 0.95742 1.02506 1.21940 1.01750 1.00175 0.95893 0.89158 0.91509 0.92498 0.90749 0.87116 0.95000 0.89911 0.91875 0.87086 0.77146 0.91404 0.94586 0.87913 0.88744 0.90720 0.93019 0.92895 0.92426 0.92997 0.92577 0.91756 0.92078 0.91278 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.12 71.98 0.58 -1.60 16 2 C -0.10 -1.76 1.25 -11.54 -0.01 -1.77 16 3 H 0.10 1.62 7.17 -2.39 -0.02 1.61 16 4 C 0.52 12.16 6.40 87.66 0.56 12.72 16 5 O -0.56 -15.96 10.85 -3.05 -0.03 -16.00 16 6 N -0.61 -14.35 3.00 -817.05 -2.45 -16.80 16 7 C 0.12 2.88 5.16 86.50 0.45 3.32 16 8 C 0.04 1.19 5.27 86.54 0.46 1.64 16 9 N -0.53 -16.15 4.37 -898.92 -3.93 -20.07 16 10 C 0.06 1.91 5.45 85.56 0.47 2.38 16 11 C 0.44 20.16 7.44 87.66 0.65 20.81 16 12 O -0.61 -31.56 13.91 -3.05 -0.04 -31.60 16 13 N -0.58 -28.67 5.29 -306.99 -1.62 -30.29 16 14 C -0.33 -18.19 9.68 84.04 0.81 -17.38 16 15 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 16 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 17 N -0.92 -49.23 13.05 21.66 0.28 -48.95 16 18 Si 0.99 42.16 29.55 68.60 2.03 44.19 16 19 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 C 0.05 1.11 5.62 86.38 0.49 1.60 16 23 C 0.12 2.78 6.61 86.35 0.57 3.35 16 24 C -0.05 -0.79 0.54 -52.18 -0.03 -0.82 16 25 C -0.15 -2.86 8.18 71.98 0.59 -2.27 16 26 C -0.15 -2.89 7.83 71.98 0.56 -2.32 16 27 C -0.14 -1.77 8.13 71.98 0.59 -1.18 16 28 H 0.09 0.99 6.16 -2.39 -0.01 0.97 16 29 H 0.07 0.98 5.90 -2.38 -0.01 0.97 16 30 H 0.06 0.91 6.72 -2.39 -0.02 0.90 16 31 H 0.07 1.87 8.13 -2.39 -0.02 1.85 16 32 H 0.11 2.02 5.05 -2.38 -0.01 2.00 16 33 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 3.02 5.77 -2.39 -0.01 3.01 16 35 H 0.06 1.92 8.13 -2.38 -0.02 1.90 16 36 H 0.11 3.23 7.97 -2.39 -0.02 3.21 16 37 H 0.39 18.85 7.90 -92.71 -0.73 18.11 16 38 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 39 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.10 2.10 7.99 -2.39 -0.02 2.08 16 41 H 0.09 2.20 7.04 -2.38 -0.02 2.19 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.05 1.30 5.74 -2.39 -0.01 1.29 16 45 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 47 H 0.06 0.94 6.55 -2.39 -0.02 0.93 16 48 H 0.06 1.58 5.30 -2.38 -0.01 1.56 16 49 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.07 0.74 6.32 -2.39 -0.02 0.72 16 51 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -65.85 380.95 1.63 -64.22 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: 0.20 Total: 37.11 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: 7.20 Total: 18.19 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -7.72 Total: -116.11 kcal Atomic # 8 Polarization: -47.52 SS G_CDS: -0.08 Total: -47.60 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -65.85 1.63 -64.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113013731.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.693 kcal (2) G-P(sol) polarization free energy of solvation -65.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds