Wall clock time and date at job start Fri Apr 10 2020 18:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.46926 * 2 1 4 4 C 1.46493 * 120.00235 * 90.00466 * 3 2 1 5 5 C 1.50706 * 109.47128 * 269.99530 * 4 3 2 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00436 * 179.72498 * 5 4 3 8 8 N 1.31514 * 120.00481 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99745 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47209 * 90.00365 * 9 7 5 11 11 H 1.48506 * 109.47294 * 210.00213 * 9 7 5 12 12 H 1.48501 * 109.47275 * 330.00116 * 9 7 5 13 13 C 1.34783 * 119.99658 * 269.99594 * 3 2 1 14 14 O 1.21284 * 119.99626 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00310 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47177 * 179.97438 * 15 13 3 17 17 C 1.46898 * 111.00045 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47348 * 179.97438 * 17 16 15 19 19 N 1.46500 * 109.47596 * 179.97438 * 18 17 16 20 20 C 1.34770 * 120.00440 * 179.97438 * 19 18 17 21 21 O 1.21284 * 120.00231 * 0.02562 * 20 19 18 22 22 C 1.50700 * 120.00170 * 180.02562 * 20 19 18 23 23 H 1.09002 * 115.54968 * 34.33394 * 22 20 19 24 24 C 1.52997 * 117.50106 * 248.62581 * 22 20 19 25 25 C 1.52998 * 60.00173 * 252.50840 * 24 22 20 26 26 C 1.53000 * 117.50161 * 252.50779 * 25 24 22 27 27 C 1.53008 * 117.51778 * 107.47799 * 25 24 22 28 28 H 1.08993 * 109.47111 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46792 * 300.00225 * 1 2 3 30 30 H 1.08997 * 109.46846 * 60.00212 * 1 2 3 31 31 H 1.08998 * 109.46792 * 239.99775 * 2 1 3 32 32 H 1.08997 * 109.46846 * 119.99788 * 2 1 3 33 33 H 1.09001 * 109.47786 * 149.99803 * 4 3 2 34 34 H 1.08998 * 109.47558 * 29.99666 * 4 3 2 35 35 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.46989 * 299.99618 * 15 13 3 37 37 H 1.08997 * 109.47408 * 59.99531 * 15 13 3 38 38 H 1.00900 * 110.99979 * 303.95102 * 16 15 13 39 39 H 1.09000 * 109.47285 * 299.99949 * 17 16 15 40 40 H 1.09008 * 109.47158 * 59.99839 * 17 16 15 41 41 H 1.09000 * 109.47309 * 300.00452 * 18 17 16 42 42 H 1.09002 * 109.46977 * 60.00420 * 18 17 16 43 43 H 0.97009 * 119.99585 * 0.02562 * 19 18 17 44 44 H 1.09007 * 117.49886 * 359.97438 * 24 22 20 45 45 H 1.08995 * 117.50457 * 145.01911 * 24 22 20 46 46 H 1.09001 * 109.46936 * 128.61929 * 26 25 24 47 47 H 1.08998 * 109.47362 * 248.62246 * 26 25 24 48 48 H 1.09000 * 109.47009 * 8.62008 * 26 25 24 49 49 H 1.08995 * 109.47012 * 351.37340 * 27 25 24 50 50 H 1.08994 * 109.46982 * 111.37448 * 27 25 24 51 51 H 1.08995 * 109.47022 * 231.37136 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2686 5 6 1.0068 2.7823 1.7037 6 1 0.1160 2.7254 1.0957 7 6 0.9935 3.5006 2.8805 8 7 -0.1026 4.1202 3.2604 9 14 2.5320 3.5927 3.9359 10 1 3.3476 4.7623 3.5211 11 1 2.1458 3.7394 5.3623 12 1 3.3258 2.3495 3.7634 13 6 2.2430 2.0165 -1.1673 14 8 2.6477 3.1598 -1.1673 15 6 1.9914 1.3063 -2.4724 16 7 2.3092 2.2064 -3.5889 17 6 2.0759 1.5461 -4.8802 18 6 2.4164 2.5127 -6.0162 19 7 2.1844 1.8540 -7.3041 20 6 2.4181 2.5189 -8.4528 21 8 2.8209 3.6624 -8.4206 22 6 2.1788 1.8414 -9.7776 23 1 1.3439 1.1411 -9.8034 24 6 3.4029 1.5141 -10.6350 25 6 2.4628 2.6491 -11.0456 26 6 1.5536 2.4116 -12.2530 27 6 2.9676 4.0830 -10.8716 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.0645 2.7985 1.1384 34 1 2.5507 1.3452 2.0283 35 1 -0.1120 4.6253 4.0884 36 1 2.6213 0.4186 -2.5302 37 1 0.9434 1.0124 -2.5300 38 1 1.7841 3.0653 -3.5216 39 1 2.7070 0.6605 -4.9548 40 1 1.0285 1.2531 -4.9546 41 1 1.7851 3.3981 -5.9415 42 1 3.4637 2.8059 -5.9421 43 1 1.8618 0.9395 -7.3299 44 1 4.3814 1.7890 -10.2411 45 1 3.3738 0.5981 -11.2250 46 1 0.5241 2.6489 -11.9849 47 1 1.8707 3.0498 -13.0778 48 1 1.6184 1.3667 -12.5566 49 1 3.9076 4.0729 -10.3200 50 1 3.1260 4.5338 -11.8512 51 1 2.2286 4.6638 -10.3197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001125782446.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:42 Heat of formation + Delta-G solvation = -73.904776 kcal Electronic energy + Delta-G solvation = -27117.188973 eV Core-core repulsion = 23244.278244 eV Total energy + Delta-G solvation = -3872.910729 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.25978 -40.77147 -38.51739 -37.42859 -36.86940 -35.34813 -34.75170 -31.91530 -31.17822 -30.25600 -29.40293 -28.34023 -26.93887 -24.87507 -24.15427 -23.71011 -23.03377 -21.45125 -20.14230 -19.87436 -19.08800 -18.25761 -17.80689 -17.59225 -17.05128 -16.78977 -16.36886 -16.18891 -15.70289 -15.39676 -15.23661 -14.89792 -14.70968 -14.61268 -14.49402 -14.34022 -14.26611 -14.01353 -13.86784 -13.55816 -13.47345 -13.29159 -13.01058 -12.89699 -12.75527 -12.68356 -12.55805 -12.46197 -12.35350 -12.11958 -11.99498 -11.86324 -11.60816 -11.17058 -10.90327 -10.81332 -10.62057 -10.46934 -10.12226 -9.49996 -9.37040 -8.32113 -6.35510 1.31855 1.36418 1.43869 1.49366 1.82460 1.95821 2.31354 2.34928 2.79750 3.02194 3.28354 3.65821 3.69944 3.75285 3.85869 3.87760 4.09185 4.14182 4.18124 4.20691 4.33678 4.40775 4.48324 4.51275 4.65264 4.68481 4.79035 4.81949 4.85192 4.87802 4.89884 4.95371 4.97732 5.00055 5.04457 5.07356 5.10459 5.12017 5.29653 5.39441 5.47424 5.52886 5.53968 5.68400 5.86763 6.18246 6.27357 6.55743 6.65890 6.76056 7.24652 7.27372 7.47587 8.84409 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.025670 B = 0.001787 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.518576 B =15668.111445 C =16127.646597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.105 3.895 3 N -0.602 5.602 4 C 0.223 3.777 5 C -0.526 4.526 6 H 0.034 0.966 7 C 0.008 3.992 8 N -0.946 5.946 9 Si 0.944 3.056 10 H -0.280 1.280 11 H -0.277 1.277 12 H -0.238 1.238 13 C 0.493 3.507 14 O -0.586 6.586 15 C 0.060 3.940 16 N -0.692 5.692 17 C 0.062 3.938 18 C 0.126 3.874 19 N -0.711 5.711 20 C 0.531 3.469 21 O -0.578 6.578 22 C -0.189 4.189 23 H 0.152 0.848 24 C -0.133 4.133 25 C -0.108 4.108 26 C -0.112 4.112 27 C -0.100 4.100 28 H 0.093 0.907 29 H 0.030 0.970 30 H 0.046 0.954 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.014 0.986 34 H 0.049 0.951 35 H 0.266 0.734 36 H 0.132 0.868 37 H 0.080 0.920 38 H 0.343 0.657 39 H 0.102 0.898 40 H 0.057 0.943 41 H 0.048 0.952 42 H 0.056 0.944 43 H 0.418 0.582 44 H 0.085 0.915 45 H 0.133 0.867 46 H 0.061 0.939 47 H 0.068 0.932 48 H 0.078 0.922 49 H 0.042 0.958 50 H 0.062 0.938 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.708 -16.939 -28.796 33.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.017 4.017 3 N -0.333 5.333 4 C 0.100 3.900 5 C -0.564 4.564 6 H 0.052 0.948 7 C -0.189 4.189 8 N -0.587 5.587 9 Si 0.767 3.233 10 H -0.206 1.206 11 H -0.202 1.202 12 H -0.161 1.161 13 C 0.282 3.718 14 O -0.466 6.466 15 C -0.072 4.072 16 N -0.325 5.325 17 C -0.067 4.067 18 C 0.002 3.998 19 N -0.364 5.364 20 C 0.319 3.681 21 O -0.458 6.458 22 C -0.210 4.210 23 H 0.170 0.830 24 C -0.170 4.170 25 C -0.109 4.109 26 C -0.169 4.169 27 C -0.157 4.157 28 H 0.112 0.888 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.131 0.869 32 H 0.103 0.897 33 H 0.032 0.968 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.150 0.850 37 H 0.098 0.902 38 H 0.161 0.839 39 H 0.120 0.880 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.255 0.745 44 H 0.104 0.896 45 H 0.151 0.849 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.097 0.903 49 H 0.061 0.939 50 H 0.080 0.920 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.801 -15.615 -28.582 32.921 hybrid contribution -0.966 0.738 1.307 1.785 sum 3.835 -14.877 -27.275 31.304 Atomic orbital electron populations 1.22162 0.96275 1.02655 1.01184 1.21808 0.94518 0.80710 1.04682 1.48073 1.64378 1.15221 1.05676 1.19326 0.95063 0.92894 0.82710 1.21570 0.97627 1.30970 1.06262 0.94771 1.25826 0.99475 0.94456 0.99157 1.70045 1.29776 1.34528 1.24350 0.85768 0.79549 0.80098 0.77835 1.20621 1.20188 1.16066 1.21335 0.77246 0.86543 0.86676 1.90656 1.47810 1.20244 1.87919 1.21826 1.02359 0.96362 0.86614 1.59976 1.63791 1.07446 1.01279 1.22056 1.01162 0.97090 0.86397 1.21036 1.01015 0.95565 0.82218 1.45704 1.67979 1.18144 1.04588 1.20324 0.76154 0.85712 0.85869 1.90728 1.47278 1.19742 1.88013 1.22430 1.04338 1.05653 0.88552 0.83047 1.23295 0.92808 1.00464 1.00466 1.21698 1.01472 0.93304 0.94378 1.21396 0.97979 1.03030 0.94489 1.21260 1.00332 0.93912 1.00241 0.88817 0.95117 0.93478 0.86899 0.89673 0.96756 0.93347 0.92467 0.85011 0.90235 0.83852 0.88014 0.92456 0.93307 0.92571 0.74467 0.89627 0.84879 0.92006 0.91329 0.90344 0.93881 0.91955 0.93833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.54 10.24 71.98 0.74 -3.80 16 2 C 0.10 2.76 5.98 86.38 0.52 3.28 16 3 N -0.60 -23.34 2.46 -826.15 -2.03 -25.37 16 4 C 0.22 10.76 4.27 85.64 0.37 11.13 16 5 C -0.53 -30.65 9.48 25.60 0.24 -30.41 16 6 H 0.03 2.21 7.67 -2.91 -0.02 2.19 16 7 C 0.01 0.50 5.47 84.65 0.46 0.96 16 8 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 9 Si 0.94 45.00 27.47 68.60 1.88 46.88 16 10 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 H -0.24 -10.11 6.53 99.48 0.65 -9.46 16 13 C 0.49 19.26 7.71 87.65 0.68 19.94 16 14 O -0.59 -29.58 15.78 -3.04 -0.05 -29.63 16 15 C 0.06 1.48 4.72 85.56 0.40 1.89 16 16 N -0.69 -17.67 6.12 -517.95 -3.17 -20.84 16 17 C 0.06 0.99 5.80 86.30 0.50 1.49 16 18 C 0.13 2.51 5.93 86.38 0.51 3.02 16 19 N -0.71 -10.67 5.56 -463.07 -2.57 -13.24 16 20 C 0.53 10.56 7.59 87.66 0.67 11.23 16 21 O -0.58 -16.95 13.10 -3.04 -0.04 -16.99 16 22 C -0.19 -2.33 5.91 -11.54 -0.07 -2.40 16 23 H 0.15 0.95 8.14 -2.39 -0.02 0.93 16 24 C -0.13 -1.39 9.53 30.59 0.29 -1.09 16 25 C -0.11 -1.45 2.70 -52.18 -0.14 -1.59 16 26 C -0.11 -0.93 9.85 71.98 0.71 -0.22 16 27 C -0.10 -1.92 8.09 71.98 0.58 -1.34 16 28 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.03 1.14 7.26 -2.39 -0.02 1.12 16 30 H 0.05 1.28 7.22 -2.39 -0.02 1.26 16 31 H 0.11 1.90 6.44 -2.39 -0.02 1.88 16 32 H 0.08 2.10 7.89 -2.39 -0.02 2.08 16 33 H 0.01 0.76 6.86 -2.39 -0.02 0.74 16 34 H 0.05 2.15 6.93 -2.39 -0.02 2.13 16 35 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 36 H 0.13 2.32 7.40 -2.39 -0.02 2.30 16 37 H 0.08 1.65 7.18 -2.39 -0.02 1.64 16 38 H 0.34 10.23 8.43 -89.69 -0.76 9.47 16 39 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 0.71 8.14 -2.38 -0.02 0.70 16 41 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.42 3.07 8.47 -92.70 -0.79 2.28 16 44 H 0.09 1.16 8.05 -2.38 -0.02 1.14 16 45 H 0.13 0.62 8.05 -2.39 -0.02 0.60 16 46 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.07 0.54 7.92 -2.39 -0.02 0.52 16 48 H 0.08 0.36 7.90 -2.39 -0.02 0.34 16 49 H 0.04 0.99 7.01 -2.39 -0.02 0.97 16 50 H 0.06 0.96 7.92 -2.39 -0.02 0.94 16 51 H 0.04 1.03 7.26 -2.39 -0.02 1.01 16 Total: -1.00 -86.08 409.66 0.11 -85.97 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -0.67 Total: 20.98 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 6.46 Total: 12.08 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -7.47 Total: -119.30 kcal Atomic # 8 Polarization: -46.53 SS G_CDS: -0.09 Total: -46.62 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.88 kcal Total: -86.08 0.11 -85.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125782446.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.069 kcal (2) G-P(sol) polarization free energy of solvation -86.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds