Wall clock time and date at job start Fri Apr 10 2020 18:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00144 * 2 1 4 4 C 1.53044 * 109.51335 * 185.83239 * 3 2 1 5 5 C 1.53117 * 109.27792 * 300.82256 * 4 3 2 6 6 C 1.53000 * 109.52114 * 177.56078 * 5 4 3 7 7 H 1.08999 * 110.32820 * 60.79779 * 6 5 4 8 8 O 1.44418 * 110.37134 * 298.54396 * 6 5 4 9 9 C 1.44423 * 105.27565 * 200.65448 * 8 6 5 10 10 C 1.54481 * 104.80198 * 40.51807 * 9 8 6 11 11 C 1.54480 * 110.36958 * 183.16491 * 6 5 4 12 12 H 1.09000 * 110.51311 * 24.17153 * 11 6 5 13 13 C 1.50693 * 110.51253 * 261.45575 * 11 6 5 14 14 O 1.21280 * 119.99936 * 0.02562 * 13 11 6 15 15 N 1.34782 * 120.00296 * 180.02562 * 13 11 6 16 16 C 1.46495 * 120.00277 * 179.97438 * 15 13 11 17 17 C 1.53002 * 109.47257 * 179.97438 * 16 15 13 18 18 N 1.46495 * 109.47257 * 179.97438 * 17 16 15 19 19 C 1.36932 * 119.99942 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00147 * 0.02562 * 19 18 17 21 21 C 1.38821 * 120.00002 * 179.97438 * 19 18 17 22 22 N 1.31611 * 119.99875 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99977 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47336 * 90.00077 * 23 21 19 25 25 H 1.48499 * 109.46914 * 210.00436 * 23 21 19 26 26 H 1.48504 * 109.47127 * 330.00030 * 23 21 19 27 27 C 1.53127 * 109.15989 * 57.65607 * 5 4 3 28 28 C 1.46830 * 110.98168 * 124.21418 * 2 1 3 29 29 H 1.09003 * 109.46681 * 60.00277 * 1 2 3 30 30 H 1.09002 * 109.47278 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47129 * 300.00662 * 1 2 3 32 32 H 1.09002 * 109.46448 * 65.81961 * 3 2 1 33 33 H 1.08994 * 109.45958 * 305.84326 * 3 2 1 34 34 H 1.09001 * 109.49858 * 60.76701 * 4 3 2 35 35 H 1.09000 * 109.49965 * 180.88251 * 4 3 2 36 36 H 1.09004 * 109.52347 * 297.75632 * 5 4 3 37 37 H 1.09001 * 110.37307 * 159.34210 * 9 8 6 38 38 H 1.08994 * 110.37419 * 281.68624 * 9 8 6 39 39 H 1.09002 * 110.51258 * 94.66003 * 10 9 8 40 40 H 1.09000 * 110.51202 * 217.23935 * 10 9 8 41 41 H 0.97001 * 119.99718 * 359.97438 * 15 13 11 42 42 H 1.09001 * 109.47070 * 299.99478 * 16 15 13 43 43 H 1.08999 * 109.47132 * 59.99724 * 16 15 13 44 44 H 1.09001 * 109.46710 * 299.99767 * 17 16 15 45 45 H 1.08999 * 109.47220 * 59.99845 * 17 16 15 46 46 H 0.97001 * 120.00005 * 359.97438 * 18 17 16 47 47 H 0.97000 * 120.00274 * 179.97438 * 22 21 19 48 48 H 1.08997 * 109.50037 * 62.28538 * 27 5 4 49 49 H 1.09000 * 109.49970 * 182.40199 * 27 5 4 50 50 H 1.08995 * 109.46742 * 54.13906 * 28 2 1 51 51 H 1.09004 * 109.45381 * 294.16241 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5183 1.3339 -0.1466 5 6 4.1186 0.5366 1.0146 6 6 5.6359 0.4443 0.8409 7 1 6.0786 1.4403 0.8430 8 8 5.9605 -0.2477 -0.3845 9 6 7.3180 -0.7097 -0.2125 10 6 7.3855 -1.2003 1.2508 11 6 6.2534 -0.4237 1.9597 12 1 5.5111 -1.1131 2.3619 13 6 6.8152 0.4468 3.0540 14 8 6.7391 1.6541 2.9678 15 7 7.4023 -0.1163 4.1287 16 6 7.9489 0.7299 5.1922 17 6 8.5534 -0.1525 6.2862 18 7 9.1006 0.6937 7.3495 19 6 9.6962 0.1215 8.4417 20 1 9.7629 -0.9536 8.5191 21 6 10.2152 0.9234 9.4490 22 7 10.1343 2.2337 9.3545 23 14 11.0283 0.1429 10.9386 24 1 12.4786 -0.0353 10.6744 25 1 10.8449 1.0230 12.1206 26 1 10.4075 -1.1796 11.2052 27 6 3.5176 -0.8718 1.0210 28 6 1.9948 -0.7709 1.1337 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.7325 1.8609 0.9375 33 1 1.5636 1.9256 -0.8331 34 1 3.7814 0.8564 -1.0905 35 1 3.9102 2.3508 -0.1308 36 1 3.8884 1.0351 1.9563 37 1 7.5292 -1.5304 -0.8980 38 1 8.0203 0.1087 -0.3711 39 1 7.2028 -2.2737 1.3025 40 1 8.3524 -0.9568 1.6910 41 1 7.4628 -1.0820 4.1979 42 1 8.7219 1.3782 4.7796 43 1 7.1517 1.3399 5.6171 44 1 7.7801 -0.8006 6.6988 45 1 9.3505 -0.7628 5.8617 46 1 9.0410 1.6594 7.2798 47 1 10.4966 2.7940 10.0585 48 1 3.7809 -1.3840 0.0955 49 1 3.9093 -1.4307 1.8710 50 1 1.5627 -1.7715 1.1241 51 1 1.7319 -0.2707 2.0659 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127571183.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:51 Heat of formation + Delta-G solvation = -75.316559 kcal Electronic energy + Delta-G solvation = -28303.435795 eV Core-core repulsion = 24430.463846 eV Total energy + Delta-G solvation = -3872.971949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -40.90319 -39.18736 -38.28983 -35.74251 -34.26360 -33.92428 -32.62559 -31.17400 -31.03877 -29.44656 -27.89246 -26.39950 -24.24663 -23.62464 -23.27231 -22.46790 -21.69961 -21.40122 -19.93692 -19.70870 -17.64182 -17.18076 -16.68198 -16.06188 -15.96526 -15.36855 -15.24668 -15.21473 -14.91958 -14.79540 -14.55789 -14.17171 -13.90314 -13.74441 -13.56785 -13.29478 -13.20684 -12.96204 -12.68865 -12.63434 -12.31551 -12.16959 -11.71062 -11.60180 -11.42873 -11.35281 -11.27280 -11.15190 -10.87672 -10.86020 -10.83892 -10.60086 -10.38664 -10.15574 -9.98423 -9.83243 -9.63843 -9.03874 -8.88570 -8.62157 -7.03476 -5.83039 -3.14002 2.60131 3.12969 3.39767 3.44683 3.46707 3.64036 3.65317 4.22156 4.28432 4.52847 4.57582 4.59382 4.61192 4.68977 4.81087 4.96563 4.99860 5.02633 5.08712 5.17789 5.21973 5.25213 5.36082 5.43762 5.46200 5.46812 5.47442 5.49919 5.53662 5.57134 5.63344 5.65625 5.72159 5.75681 5.84692 5.88766 5.91799 6.04204 6.10041 6.26764 6.42633 6.61021 6.65002 6.68555 6.77948 6.79478 7.53008 7.62380 8.22420 8.34448 9.45707 10.00160 10.34807 11.39470 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.019304 B = 0.002139 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.150559 B =13089.851689 C =13762.986336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.055 3.945 4 C -0.108 4.108 5 C -0.080 4.080 6 C 0.098 3.902 7 H 0.090 0.910 8 O -0.363 6.363 9 C 0.046 3.954 10 C -0.146 4.146 11 C -0.146 4.146 12 H 0.113 0.887 13 C 0.519 3.481 14 O -0.538 6.538 15 N -0.721 5.721 16 C 0.110 3.890 17 C 0.145 3.855 18 N -0.729 5.729 19 C -0.245 4.245 20 H 0.072 0.928 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C -0.112 4.112 28 C 0.055 3.945 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.023 0.977 32 H 0.032 0.968 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.400 0.600 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.024 0.976 45 H 0.024 0.976 46 H 0.386 0.614 47 H 0.257 0.743 48 H 0.082 0.918 49 H 0.066 0.934 50 H 0.074 0.926 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.548 -7.997 -22.775 28.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.267 5.267 3 C -0.073 4.073 4 C -0.145 4.145 5 C -0.099 4.099 6 C 0.040 3.960 7 H 0.108 0.892 8 O -0.281 6.281 9 C -0.031 4.031 10 C -0.184 4.184 11 C -0.168 4.168 12 H 0.131 0.869 13 C 0.304 3.696 14 O -0.415 6.415 15 N -0.372 5.372 16 C -0.013 4.013 17 C 0.017 3.983 18 N -0.375 5.375 19 C -0.376 4.376 20 H 0.090 0.910 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.741 3.259 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.149 4.149 28 C -0.073 4.073 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.234 0.766 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.042 0.958 45 H 0.042 0.958 46 H 0.220 0.780 47 H 0.067 0.933 48 H 0.101 0.899 49 H 0.084 0.916 50 H 0.092 0.908 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -15.520 -7.480 -23.305 28.982 hybrid contribution 0.397 -0.146 1.992 2.037 sum -15.123 -7.625 -21.313 27.223 Atomic orbital electron populations 1.22351 0.87476 1.01974 1.00568 1.61927 1.07337 1.13971 1.43476 1.22114 0.95862 0.88890 1.00391 1.21557 0.93546 1.00104 0.99337 1.21248 0.92208 0.96913 0.99500 1.22888 0.95263 0.96016 0.81862 0.89231 1.89136 1.28740 1.74034 1.36228 1.23370 0.84957 0.99062 0.95686 1.22952 0.98514 1.00897 0.96075 1.22851 0.99358 0.98590 0.95996 0.86871 1.20257 0.77991 0.88730 0.82634 1.90710 1.57570 1.14693 1.78513 1.45938 1.59516 1.10654 1.21060 1.21597 0.98493 0.93812 0.87441 1.20750 0.95636 0.93316 0.88616 1.42187 1.69899 1.05465 1.19911 1.19185 1.30088 0.91711 0.96606 0.91028 1.24793 1.01613 0.95417 0.99043 1.69663 1.50972 1.02454 1.34729 0.86140 0.79286 0.78040 0.82390 1.21606 1.21665 1.20697 1.21678 0.93666 0.96598 1.02987 1.22109 0.95829 0.98075 0.91292 0.91411 0.91442 0.95798 0.94963 0.90756 0.90123 0.91383 0.90210 0.88806 0.92115 0.89603 0.89879 0.76640 0.91262 0.91267 0.95822 0.95831 0.78003 0.93329 0.89908 0.91576 0.90777 0.95010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.59 60.07 0.58 0.75 16 2 N -0.54 -4.81 4.91 -242.97 -1.19 -6.00 16 3 C 0.06 0.48 5.47 -3.83 -0.02 0.46 16 4 C -0.11 -1.02 5.28 -26.65 -0.14 -1.16 16 5 C -0.08 -0.79 2.22 -90.49 -0.20 -0.99 16 6 C 0.10 1.04 2.39 -25.95 -0.06 0.98 16 7 H 0.09 1.15 6.91 -51.93 -0.36 0.80 16 8 O -0.36 -3.79 10.03 -35.23 -0.35 -4.14 16 9 C 0.05 0.39 7.63 37.93 0.29 0.68 16 10 C -0.15 -1.16 6.71 -25.16 -0.17 -1.33 16 11 C -0.15 -1.43 2.87 -90.20 -0.26 -1.69 16 12 H 0.11 0.93 5.66 -51.93 -0.29 0.64 16 13 C 0.52 6.93 6.94 -10.99 -0.08 6.85 16 14 O -0.54 -9.34 15.45 5.56 0.09 -9.26 16 15 N -0.72 -9.30 5.54 -60.30 -0.33 -9.63 16 16 C 0.11 1.84 5.79 -4.04 -0.02 1.82 16 17 C 0.15 2.78 6.37 -4.04 -0.03 2.75 16 18 N -0.73 -18.36 5.60 -59.91 -0.34 -18.70 16 19 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.12 13.06 55.49 0.72 -27.40 16 23 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 C -0.11 -0.97 4.92 -26.65 -0.13 -1.10 16 28 C 0.05 0.46 5.46 -3.84 -0.02 0.44 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 31 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 34 H 0.08 0.84 7.70 -51.93 -0.40 0.44 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.69 7.73 -51.93 -0.40 0.29 16 41 H 0.40 4.02 8.47 -40.82 -0.35 3.67 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.39 10.31 7.67 -40.82 -0.31 10.00 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 48 H 0.08 0.80 7.61 -51.93 -0.40 0.40 16 49 H 0.07 0.51 6.09 -51.93 -0.32 0.19 16 50 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 51 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 396.74 15.07 5.98 5.98 Total: -1.00 -32.76 396.74 -10.09 -42.85 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -9.13 Total: 8.06 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -0.51 Total: 1.09 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -1.14 Total: -61.72 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.27 Total: -13.40 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.76 -10.09 -42.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127571183.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.462 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds